Rmu_sc0000388.1_g000052

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000388.1
OG0000947
Physical Location & Seq
Reverse (-)
266627 .. 268300
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000388.1_g000052.1.cds

Sequence Viewer

Length: 1512 bp
atgagtgtgtccaagttatggcaccgaatcacatcggttctttgggtgagaaaattttgggcgcagtcccctcctttgggtcttttcttgcgcaccaccgccaacaccaccgtgggcaatctaaaatatcattgcatgaattatatctctttatataattatcatgacatagaagataacctggaaagcacccgcgttttcgttttcggacaaccatattatgacatagaagattatagggaccaaaagatgattttgcagacttttggtagagaatggcattatccgggttattatgatgacgacgaggctgatggtgttcttgatgatgattataaacccgatgatcgtgatcagtacctaaacggttgtaatgggttacttttgttattgaaatcagcaactcatcaattttatgtttgcaatcccatcacaagacaacaagtcgccatacctaaagcccgtgtgcacaaaaaccatgatgatcagcatttttgtgctgccttggcttttgacccttctgaatctcctcatcactacagaattgtgagaattgatttttctccggaaccggcttcatcagcctcagactcctcatccttgatagacatattttcgtccgaatatggacaatggattcgacataggttgcagcttgattcaagtctcactgacgggttgaaagagtgcaagttgtgcaggcaatttttttatttgcggggaaagttatacagtataaccatgtcgtggaacctcctatgcattgacctcaagactgttgaagcttccgcccttgaacttcctatcccggtggcggatagaaccggaaccatgggatgtcttggggtgtcaagggaccttctttgctatatgaagcgtatgcctgataaatcaagtcggtttcacaatctggtagtttggtcttatgaaaaaggtgagtggattccccgatatagtgtaagttgtcatttgttgggagaaggaatattggatgatctaggctatgactacgatgacaccatggaaccctatgcaataagcccaagttcggatctcttgttctttggcactccaaccttgatttactgtatccaccttaaaagcgaaaagatgaaattcgttggtgaaacgagctgtaaaatagatacacctgcttgtttcttgacattacgtgcttgcttcgtacctttccacactcaattgcgtaaggggaaccacgtctccatgtcattagaaatggaagcaatgagttctgagggcacaaacattttgagtgtagaagaaccaaatgacaaacaagaagatgctgaatcagtgaaagtaatagatgtgaagttatatgatagtatgaaaaaagatccatcaccgtcattggtttatcccagtgaaatcatggaaatgcatctagagcttgagcaaatccatgacgacacctctagtgatgatgaacatgtcgtagatcagcttgaaggtcttgtagggagtatgaggaagaggaggaaaatcgagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

503

Amino Acids

57.96

Weight (kDa)

5.25

Isoelectric Point (pI)

56.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 336
AarI CACCTGC 1 cut(s) 1159
Acc16I TGCGCA 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 1159
AccB1I GGYRCC 1 cut(s) 21
AccB7I CCANNNNNTGG 2 cut(s) 18, 747
AccII CGCG 1 cut(s) 195
AccIII TCCGGA 1 cut(s) 565
AciI CCGC 5 cut(s) 99, 193, 718, 789, 815
AclWI GGATC 2 cut(s) 1059, 1352
AcsI RAATTY 2 cut(s) 53, 1115
AfaI GTAC 2 cut(s) 359, 1185
AfiI CCNNNNNNNGG 6 cut(s) 18, 76, 77, 747, 814, 1048
AflIII ACRYGT 1 cut(s) 1450
AgsI TTSAA 6 cut(s) 394, 663, 682, 782, 797, 1469
AhdI GACNNNNNGTC 1 cut(s) 443
AjiI CACGTC 1 cut(s) 1219
AjnI CCWGG 1 cut(s) 180
AleI CACNNNNGTG 1 cut(s) 110
AloI GAACNNNNNNTCC 6 cut(s) 789, 821, 1043, 1075, 1205, 1237
AluBI AGCT 5 cut(s) 655, 785, 1134, 1411, 1465
AluI AGCT 5 cut(s) 655, 785, 1134, 1411, 1465
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 2 cut(s) 671, 1225
Alw44I GTGCAC 1 cut(s) 467
AlwI GGATC 2 cut(s) 1059, 1352
Aor13HI TCCGGA 1 cut(s) 565
ApaLI GTGCAC 1 cut(s) 467
ApeKI GCWGC 2 cut(s) 500, 652
ApoI RAATTY 2 cut(s) 53, 1115
ArsI GACNNNNNNTTYG 2 cut(s) 621, 653
AspLEI GCGC 2 cut(s) 64, 93
AspS9I GGNCC 2 cut(s) 241, 856
AsuC2I CCSGG 2 cut(s) 288, 809
AsuHPI GGTGA 4 cut(s) 58, 947, 1136, 1356
AvaII GGWCC 2 cut(s) 241, 856
BaeGI GKGCMC 2 cut(s) 471, 1262
BanI GGYRCC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 471
BbvI GCAGC 2 cut(s) 487, 664
BccI CCATC 3 cut(s) 308, 437, 1369
BciT130I CCWGG 1 cut(s) 182
BciVI GTATCC 1 cut(s) 1100
BclI TGATCA 2 cut(s) 352, 484
BcnI CCSGG 2 cut(s) 288, 809
BcoDI GTCTC 2 cut(s) 671, 1225
BfaI CTAG 3 cut(s) 998, 1406, 1437
BfmI CTRYAG 1 cut(s) 538
BfuAI ACCTGC 1 cut(s) 1159
BfuI GTATCC 1 cut(s) 1100
BisI GCNGC 2 cut(s) 501, 653
BlsI GCNGC 2 cut(s) 502, 654
Bme1390I CCNGG 3 cut(s) 182, 288, 809
Bme18I GGWCC 2 cut(s) 241, 856
BmeRI GACNNNNNGTC 1 cut(s) 443
BmgBI CACGTC 1 cut(s) 1219
BmgT120I GGNCC 2 cut(s) 241, 856
BmiI GGNNCC 8 cut(s) 23, 242, 570, 752, 829, 857, 1026, 1214
BmrFI CCNGG 3 cut(s) 182, 288, 809
BmrI ACTGGG 1 cut(s) 1377
BmsI GCATC 2 cut(s) 1294, 1411
BmuI ACTGGG 1 cut(s) 1377
BpuEI CTTGAG 2 cut(s) 755, 1433
BpuMI CCSGG 2 cut(s) 288, 809
BsaAI YACGTR 1 cut(s) 1172
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 4 cut(s) 111, 504, 831, 1020
BsaWI WCCGGW 2 cut(s) 565, 824
BsaXI ACNNNNNCTCC 2 cut(s) 1205, 1235
Bsc4I CCNNNNNNNGG 6 cut(s) 18, 76, 77, 747, 814, 1048
Bse118I RCCGGY 1 cut(s) 571
Bse1I ACTGG 1 cut(s) 1383
Bse3DI GCAATG 2 cut(s) 130, 1251
Bse8I GATNNNNATC 1 cut(s) 351
BseAI TCCGGA 1 cut(s) 565
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 4 cut(s) 111, 504, 831, 1020
BseGI GGATG 3 cut(s) 596, 842, 997
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 6 cut(s) 18, 76, 77, 747, 814, 1048
BseMI GCAATG 2 cut(s) 130, 1251
BseMII CTCAG 2 cut(s) 600, 1245
BseNI ACTGG 1 cut(s) 1383
BseRI GAGGAG 3 cut(s) 519, 583, 1510
BseSI GKGCMC 2 cut(s) 471, 1262
BseXI GCAGC 2 cut(s) 487, 664
BsgI GTGCAG 1 cut(s) 718
Bsh1236I CGCG 1 cut(s) 195
BshNI GGYRCC 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 471
BsiSI CCGG 5 cut(s) 287, 566, 572, 809, 825
BslFI GGGAC 3 cut(s) 52, 254, 869
BslI CCNNNNNNNGG 6 cut(s) 18, 76, 77, 747, 814, 1048
BsmAI GTCTC 2 cut(s) 671, 1225
BsmBI CGTCTC 1 cut(s) 1225
BsmFI GGGAC 3 cut(s) 52, 254, 869
Bsp1286I GDGCHC 2 cut(s) 471, 1262
Bsp13I TCCGGA 1 cut(s) 565
Bsp143I GATC 7 cut(s) 346, 352, 484, 994, 1051, 1357, 1459
Bsp19I CCATGG 2 cut(s) 831, 1020
BspACI CCGC 5 cut(s) 99, 193, 718, 789, 815
BspCNI CTCAG 2 cut(s) 599, 1246
BspEI TCCGGA 1 cut(s) 565
BspFNI CGCG 1 cut(s) 195
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 8 cut(s) 23, 242, 570, 752, 829, 857, 1026, 1214
BspMI ACCTGC 1 cut(s) 1159
BspPI GGATC 2 cut(s) 1059, 1352
BspT107I GGYRCC 1 cut(s) 21
BsrDI GCAATG 2 cut(s) 130, 1251
BsrFI RCCGGY 1 cut(s) 571
BsrI ACTGG 1 cut(s) 1383
BssAI RCCGGY 1 cut(s) 571
BssECI CCNNGG 4 cut(s) 111, 504, 831, 1020
BssMI GATC 7 cut(s) 346, 352, 484, 994, 1051, 1357, 1459
BssT1I CCWWGG 3 cut(s) 504, 831, 1020
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 6 cut(s) 112, 368, 734, 778, 1088, 1368
Bst6I CTCTTC 1 cut(s) 1487
BstAPI GCANNNNNTGC 1 cut(s) 696
BstBAI YACGTR 1 cut(s) 1172
BstC8I GCNNGC 2 cut(s) 701, 1177
BstDEI CTNAG 2 cut(s) 586, 1254
BstDSI CCRYGG 3 cut(s) 111, 831, 1020
BstF5I GGATG 3 cut(s) 596, 842, 997
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 2 cut(s) 64, 93
BstKTI GATC 7 cut(s) 349, 355, 487, 997, 1054, 1360, 1462
BstMAI GTCTC 2 cut(s) 671, 1225
BstMBI GATC 7 cut(s) 346, 352, 484, 994, 1051, 1357, 1459
BstMWI GCNNNNNNNGC 4 cut(s) 506, 581, 696, 1408
BstNI CCWGG 1 cut(s) 182
BstNSI RCATGY 1 cut(s) 1454
BstSCI CCNGG 3 cut(s) 180, 286, 807
BstSFI CTRYAG 1 cut(s) 538
BstSLI GKGCMC 2 cut(s) 471, 1262
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 487, 664
BstX2I RGATCY 2 cut(s) 1051, 1357
BstYI RGATCY 2 cut(s) 1051, 1357
BsuI GTATCC 1 cut(s) 1100
BtgI CCRYGG 3 cut(s) 111, 831, 1020
BtrI CACGTC 1 cut(s) 1219
BtsCI GGATG 3 cut(s) 596, 842, 997
BtsIMutI CAGTG 3 cut(s) 669, 1320, 1390
BveI ACCTGC 1 cut(s) 1159
Cac8I GCNNGC 2 cut(s) 701, 1177
CciI TCATGA 1 cut(s) 163
CfoI GCGC 2 cut(s) 64, 93
Cfr10I RCCGGY 1 cut(s) 571
Cfr13I GGNCC 2 cut(s) 241, 856
Csp6I GTAC 2 cut(s) 358, 1184
CviQI GTAC 2 cut(s) 358, 1184
DdeI CTNAG 2 cut(s) 586, 1254
DpnI GATC 7 cut(s) 348, 354, 486, 996, 1053, 1359, 1461
DpnII GATC 7 cut(s) 346, 352, 484, 994, 1051, 1357, 1459
DriI GACNNNNNGTC 1 cut(s) 443
Eam1104I CTCTTC 1 cut(s) 1487
Eam1105I GACNNNNNGTC 1 cut(s) 443
EarI CTCTTC 1 cut(s) 1487
EciI GGCGGA 2 cut(s) 778, 830
Eco130I CCWWGG 3 cut(s) 504, 831, 1020
Eco47I GGWCC 2 cut(s) 241, 856
EcoO109I RGGNCCY 1 cut(s) 856
EcoRII CCWGG 1 cut(s) 180
EcoT14I CCWWGG 3 cut(s) 504, 831, 1020
EcoT22I ATGCAT 2 cut(s) 764, 1404
ErhI CCWWGG 3 cut(s) 504, 831, 1020
Esp3I CGTCTC 1 cut(s) 1225
FaqI GGGAC 3 cut(s) 52, 254, 869
FauI CCCGC 2 cut(s) 200, 711
FbaI TGATCA 2 cut(s) 352, 484
Fnu4HI GCNGC 2 cut(s) 501, 653
FokI GGATG 3 cut(s) 583, 849, 1004
Fsp4HI GCNGC 2 cut(s) 501, 653
FspBI CTAG 3 cut(s) 998, 1406, 1437
FspI TGCGCA 1 cut(s) 92
GlaI GCGC 2 cut(s) 63, 92
GluI GCNGC 2 cut(s) 501, 653
HapII CCGG 5 cut(s) 287, 566, 572, 809, 825
HhaI GCGC 2 cut(s) 64, 93
Hin6I GCGC 2 cut(s) 62, 91
HinP1I GCGC 2 cut(s) 62, 91
HindIII AAGCTT 1 cut(s) 783
HinfI GANTC 7 cut(s) 27, 524, 590, 637, 659, 943, 1310
HpaII CCGG 5 cut(s) 287, 566, 572, 809, 825
HphI GGTGA 4 cut(s) 58, 947, 1136, 1356
Hpy166II GTNNAC 1 cut(s) 469
Hpy188I TCNGA 6 cut(s) 209, 523, 589, 622, 1051, 1255
Hpy188III TCNNGA 7 cut(s) 164, 323, 350, 566, 772, 1162, 1406
Hpy8I GTNNAC 1 cut(s) 469
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 4 cut(s) 528, 869, 974, 1463
HpyCH4III ACNGT 6 cut(s) 112, 368, 734, 778, 1088, 1368
HpyCH4IV ACGT 2 cut(s) 1171, 1218
HpyF10VI GCNNNNNNNGC 4 cut(s) 506, 581, 696, 1408
HpyF3I CTNAG 2 cut(s) 586, 1254
HpySE526I ACGT 2 cut(s) 1171, 1218
HspAI GCGC 2 cut(s) 62, 91
Kpn2I TCCGGA 1 cut(s) 565
Ksp22I TGATCA 2 cut(s) 352, 484
Kzo9I GATC 7 cut(s) 346, 352, 484, 994, 1051, 1357, 1459
Lsp1109I GCAGC 2 cut(s) 487, 664
LweI GCATC 2 cut(s) 1294, 1411
MaeI CTAG 3 cut(s) 998, 1406, 1437
MaeII ACGT 2 cut(s) 1171, 1218
MaeIII GTNAC 1 cut(s) 378
MalI GATC 7 cut(s) 348, 354, 486, 996, 1053, 1359, 1461
MboI GATC 7 cut(s) 346, 352, 484, 994, 1051, 1357, 1459
MboII GAAGA 5 cut(s) 185, 242, 1292, 1313, 1504
MfeI CAATTG 1 cut(s) 1199
MflI RGATCY 2 cut(s) 1051, 1357
MhlI GDGCHC 2 cut(s) 471, 1262
MluCI AATT 9 cut(s) 53, 139, 157, 410, 543, 552, 704, 1115, 1199
MlyI GAGTC 1 cut(s) 584
MmeI TCCRAC 1 cut(s) 1097
Mph1103I ATGCAT 2 cut(s) 764, 1404
MroI TCCGGA 1 cut(s) 565
MseI TTAA 1 cut(s) 1098
MslI CAYNNNNRTG 3 cut(s) 110, 495, 1397
MspI CCGG 5 cut(s) 287, 566, 572, 809, 825
MspR9I CCNGG 3 cut(s) 182, 288, 809
MunI CAATTG 1 cut(s) 1199
MvaI CCWGG 1 cut(s) 182
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 4 cut(s) 506, 581, 696, 1408
NciI CCSGG 2 cut(s) 288, 809
NcoI CCATGG 2 cut(s) 831, 1020
NdeII GATC 7 cut(s) 346, 352, 484, 994, 1051, 1357, 1459
NlaIV GGNNCC 8 cut(s) 23, 242, 570, 752, 829, 857, 1026, 1214
NsbI TGCGCA 1 cut(s) 92
NsiI ATGCAT 2 cut(s) 764, 1404
NspI RCATGY 1 cut(s) 1454
OliI CACNNNNGTG 1 cut(s) 110
PagI TCATGA 1 cut(s) 163
PaqCI CACCTGC 1 cut(s) 1159
PciI ACATGT 1 cut(s) 1450
PfeI GAWTC 6 cut(s) 27, 524, 637, 659, 943, 1310
PflMI CCANNNNNTGG 2 cut(s) 18, 747
PkrI GCNGC 2 cut(s) 502, 654
PleI GAGTC 1 cut(s) 584
PpsI GAGTC 1 cut(s) 584
Ppu21I YACGTR 1 cut(s) 1172
PpuMI RGGWCCY 1 cut(s) 856
PscI ACATGT 1 cut(s) 1450
PsiI TTATAA 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 856
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 8 cut(s) 23, 242, 570, 752, 829, 857, 1026, 1214
PspPI GGNCC 2 cut(s) 241, 856
PspPPI RGGWCCY 1 cut(s) 856
PsuI RGATCY 2 cut(s) 1051, 1357
RsaI GTAC 2 cut(s) 359, 1185
RsaNI GTAC 2 cut(s) 358, 1184
RseI CAYNNNNRTG 3 cut(s) 110, 495, 1397
SaqAI TTAA 1 cut(s) 1098
SatI GCNGC 2 cut(s) 501, 653
Sau3AI GATC 7 cut(s) 346, 352, 484, 994, 1051, 1357, 1459
Sau96I GGNCC 2 cut(s) 241, 856
SchI GAGTC 1 cut(s) 584
ScrFI CCNGG 3 cut(s) 182, 288, 809
SduI GDGCHC 2 cut(s) 471, 1262
SfaNI GCATC 2 cut(s) 1294, 1411
SfcI CTRYAG 1 cut(s) 538
SinI GGWCC 2 cut(s) 241, 856
SmiMI CAYNNNNRTG 3 cut(s) 110, 495, 1397
SmlI CTYRAG 2 cut(s) 770, 1412
SmoI CTYRAG 2 cut(s) 770, 1412
Sse9I AATT 9 cut(s) 53, 139, 157, 410, 543, 552, 704, 1115, 1199
SsiI CCGC 5 cut(s) 99, 193, 718, 789, 815
SspI AATATT 1 cut(s) 987
SspMI CTAG 3 cut(s) 998, 1406, 1437
StyD4I CCNGG 3 cut(s) 180, 286, 807
StyI CCWWGG 3 cut(s) 504, 831, 1020
TaaI ACNGT 6 cut(s) 112, 368, 734, 778, 1088, 1368
TaiI ACGT 2 cut(s) 1174, 1221
TaqI TCGA 2 cut(s) 640, 1506
TasI AATT 9 cut(s) 53, 139, 157, 410, 543, 552, 704, 1115, 1199
TfiI GAWTC 6 cut(s) 27, 524, 637, 659, 943, 1310
Tru1I TTAA 1 cut(s) 1098
Tru9I TTAA 1 cut(s) 1098
TscAI CASTG 3 cut(s) 676, 1320, 1390
TseI GCWGC 2 cut(s) 500, 652
TspDTI ATGAA 7 cut(s) 152, 567, 887, 942, 1127, 1364, 1461
TspRI CASTG 3 cut(s) 676, 1320, 1390
Van91I CCANNNNNTGG 2 cut(s) 18, 747
VneI GTGCAC 1 cut(s) 467
VpaK11BI GGWCC 2 cut(s) 241, 856
XapI RAATTY 2 cut(s) 53, 1115
XbaI TCTAGA 1 cut(s) 1405
XceI RCATGY 1 cut(s) 1454
XcmI CCANNNNNNNNNTGG 2 cut(s) 109, 1390
XspI CTAG 3 cut(s) 998, 1406, 1437
Zsp2I ATGCAT 2 cut(s) 764, 1404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.