RLG00000017173

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000947
Physical Location & Seq
Forward (+)
13700531 .. 13701251
721 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017173

Sequence Viewer

Length: 621 bp
ATGTACACGGCAGCTTTAGGATCTCCTTCCTATTTTGCTTCTTGTACACAACAGCTTTATATGATAGTTGTTAGAATTGATTATTCTGCATCCTACTCAGCTGTGCTGGATATATTCTCGTCTGAATATGGACTGTGGGTTCGACATTGGCTGCAAATTGACCCAGGTTTTACTGAGGGATTCAAAAGCTCCAAGTTGTGCAGGCATTTTGTTTACTTGCGGGGCACTCTATACAGCATAGCCCTATCCTGGAACCTTTTATGCATTGACCTCAATACTGTTGCAGCTTCTGCCCTTGAACTTCCTGTTCCAGAGAATGAAAAGACCGGAGCCATGGGATGTCTTGGGGTGTCGATGAATAGTCTCTGCTATATGAAGCGAATGCTCGATAATTCGAAGGACTTTCACAATCTGGCAGTTTGGTATAATGATGATGAATCTGGGGAATGGATTCTCAGATATGGTGTTTCTTGTCGCTTATTGGGATACGGATTCCAGTCTCGAGGTTATGACTACGATGATTCCATGGAACCCTGTGCAATAAGTCCAACTTCAGATCTCTTGTTCTATGGTAATCCCAACTTGATTTGTTGTATCCACCTTAAAAGCGAAAAGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

207

Amino Acids

23.31

Weight (kDa)

5.13

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 30 - 162 6e-06 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 220
AclWI GGATC 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 537
AfaI GTAC 2 cut(s) 5, 46
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 2 cut(s) 184, 299
AjnI CCWGG 2 cut(s) 163, 248
AloI GAACNNNNNNTCC 2 cut(s) 123, 155
AluBI AGCT 5 cut(s) 14, 55, 101, 189, 287
AluI AGCT 5 cut(s) 14, 55, 101, 189, 287
Alw26I GTCTC 2 cut(s) 368, 504
AlwI GGATC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 290
Ama87I CYCGRG 1 cut(s) 501
ApeKI GCWGC 3 cut(s) 11, 151, 284
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
Asp700I GAANNNNTTC 1 cut(s) 450
AsuII TTCGAA 1 cut(s) 395
AvaI CYCGRG 1 cut(s) 501
BaeGI GKGCMC 1 cut(s) 227
BbvI GCAGC 3 cut(s) 23, 138, 296
BceAI ACGGC 1 cut(s) 24
BciT130I CCWGG 2 cut(s) 165, 250
BciVI GTATCC 2 cut(s) 479, 605
BcoDI GTCTC 2 cut(s) 368, 504
BfuI GTATCC 2 cut(s) 479, 605
BglII AGATCT 1 cut(s) 556
BisI GCNGC 3 cut(s) 12, 152, 285
BlsI GCNGC 3 cut(s) 13, 153, 286
Bme1390I CCNGG 2 cut(s) 165, 250
BmeT110I CYCGRG 1 cut(s) 501
BmiI GGNNCC 3 cut(s) 254, 331, 531
BmrFI CCNGG 2 cut(s) 165, 250
BmsI GCATC 1 cut(s) 98
Bpu14I TTCGAA 1 cut(s) 395
BsaJI CCNNGG 3 cut(s) 163, 333, 525
BsaWI WCCGGW 1 cut(s) 326
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 496
BseBI CCWGG 2 cut(s) 165, 250
BseDI CCNNGG 3 cut(s) 163, 333, 525
BseGI GGATG 2 cut(s) 89, 344
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMII CTCAG 3 cut(s) 111, 165, 469
BseNI ACTGG 1 cut(s) 496
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 3 cut(s) 23, 138, 296
BsgI GTGCAG 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 501
BsiSI CCGG 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 2 cut(s) 368, 504
BsmI GAATGC 1 cut(s) 387
BsoBI CYCGRG 1 cut(s) 501
Bsp119I TTCGAA 1 cut(s) 395
Bsp1286I GDGCHC 1 cut(s) 227
Bsp1407I TGTACA 2 cut(s) 3, 44
Bsp143I GATC 2 cut(s) 20, 556
Bsp19I CCATGG 2 cut(s) 333, 525
BspACI CCGC 1 cut(s) 220
BspCNI CTCAG 3 cut(s) 110, 166, 468
BspLI GGNNCC 3 cut(s) 254, 331, 531
BspPI GGATC 1 cut(s) 28
BspT104I TTCGAA 1 cut(s) 395
BsrGI TGTACA 2 cut(s) 3, 44
BsrI ACTGG 1 cut(s) 496
BssECI CCNNGG 3 cut(s) 163, 333, 525
BssMI GATC 2 cut(s) 20, 556
BssT1I CCWWGG 2 cut(s) 333, 525
Bst2UI CCWGG 2 cut(s) 165, 250
Bst4CI ACNGT 2 cut(s) 135, 280
BstAPI GCANNNNNTGC 1 cut(s) 290
BstAUI TGTACA 2 cut(s) 3, 44
BstBI TTCGAA 1 cut(s) 395
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 3 cut(s) 97, 174, 455
BstDSI CCRYGG 2 cut(s) 333, 525
BstF5I GGATG 2 cut(s) 89, 344
BstKTI GATC 2 cut(s) 23, 559
BstMAI GTCTC 2 cut(s) 368, 504
BstMBI GATC 2 cut(s) 20, 556
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNI CCWGG 2 cut(s) 165, 250
BstSCI CCNGG 2 cut(s) 163, 248
BstSLI GKGCMC 1 cut(s) 227
BstV1I GCAGC 3 cut(s) 23, 138, 296
BstX2I RGATCY 2 cut(s) 20, 556
BstYI RGATCY 2 cut(s) 20, 556
BsuI GTATCC 2 cut(s) 479, 605
BtgI CCRYGG 2 cut(s) 333, 525
BtsCI GGATG 2 cut(s) 89, 344
Cac8I GCNNGC 1 cut(s) 203
CaiI CAGNNNCTG 1 cut(s) 290
Csp6I GTAC 2 cut(s) 4, 45
CviAII CATG 2 cut(s) 334, 526
CviJI RGCY 8 cut(s) 14, 55, 101, 151, 189, 242, 287, 332
CviKI_1 RGCY 8 cut(s) 14, 55, 101, 151, 189, 242, 287, 332
CviQI GTAC 2 cut(s) 4, 45
DdeI CTNAG 3 cut(s) 97, 174, 455
DpnI GATC 2 cut(s) 22, 558
DpnII GATC 2 cut(s) 20, 556
Eco130I CCWWGG 2 cut(s) 333, 525
Eco57I CTGAAG 1 cut(s) 537
Eco88I CYCGRG 1 cut(s) 501
EcoRII CCWGG 2 cut(s) 163, 248
EcoT14I CCWWGG 2 cut(s) 333, 525
EcoT22I ATGCAT 1 cut(s) 266
ErhI CCWWGG 2 cut(s) 333, 525
FaeI CATG 2 cut(s) 337, 529
FalI AAGNNNNNCTT 2 cut(s) 535, 567
FatI CATG 2 cut(s) 333, 525
FauI CCCGC 1 cut(s) 213
Fnu4HI GCNGC 3 cut(s) 12, 152, 285
FokI GGATG 2 cut(s) 76, 351
Fsp4HI GCNGC 3 cut(s) 12, 152, 285
GluI GCNGC 3 cut(s) 12, 152, 285
HapII CCGG 1 cut(s) 327
Hin1II CATG 2 cut(s) 337, 529
HinfI GANTC 5 cut(s) 180, 437, 451, 492, 521
HpaII CCGG 1 cut(s) 327
Hpy166II GTNNAC 3 cut(s) 6, 47, 214
Hpy188I TCNGA 3 cut(s) 124, 458, 556
Hpy188III TCNNGA 2 cut(s) 311, 501
Hpy8I GTNNAC 3 cut(s) 6, 47, 214
HpyAV CCTTC 2 cut(s) 36, 391
HpyCH4III ACNGT 2 cut(s) 135, 280
HpyCH4V TGCA 6 cut(s) 89, 154, 201, 264, 284, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 3 cut(s) 97, 174, 455
Hsp92II CATG 2 cut(s) 337, 529
Kzo9I GATC 2 cut(s) 20, 556
LmnI GCTCC 2 cut(s) 194, 329
Lsp1109I GCAGC 3 cut(s) 23, 138, 296
LweI GCATC 1 cut(s) 98
MalI GATC 2 cut(s) 22, 558
MboI GATC 2 cut(s) 20, 556
MflI RGATCY 2 cut(s) 20, 556
MhlI GDGCHC 1 cut(s) 227
MluCI AATT 3 cut(s) 75, 156, 391
MmeI TCCRAC 1 cut(s) 572
MnlI CCTC 3 cut(s) 169, 281, 497
Mph1103I ATGCAT 1 cut(s) 266
MroXI GAANNNNTTC 1 cut(s) 450
MseI TTAA 1 cut(s) 603
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 2 cut(s) 165, 250
Mva1269I GAATGC 1 cut(s) 387
MvaI CCWGG 2 cut(s) 165, 250
MwoI GCNNNNNNNGC 1 cut(s) 290
NcoI CCATGG 2 cut(s) 333, 525
NdeII GATC 2 cut(s) 20, 556
NlaIII CATG 2 cut(s) 337, 529
NlaIV GGNNCC 3 cut(s) 254, 331, 531
NsiI ATGCAT 1 cut(s) 266
NspV TTCGAA 1 cut(s) 395
PaeR7I CTCGAG 1 cut(s) 501
PctI GAATGC 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 5 cut(s) 180, 437, 451, 492, 521
PfoI TCCNGGA 1 cut(s) 248
PkrI GCNGC 3 cut(s) 13, 153, 286
Psp6I CCWGG 2 cut(s) 163, 248
PspGI CCWGG 2 cut(s) 163, 248
PspN4I GGNNCC 3 cut(s) 254, 331, 531
PstNI CAGNNNCTG 1 cut(s) 290
PsuI RGATCY 2 cut(s) 20, 556
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 2 cut(s) 5, 46
RsaNI GTAC 2 cut(s) 4, 45
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 3 cut(s) 12, 152, 285
Sau3AI GATC 2 cut(s) 20, 556
ScrFI CCNGG 2 cut(s) 165, 250
SduI GDGCHC 1 cut(s) 227
SfaNI GCATC 1 cut(s) 98
Sfr274I CTCGAG 1 cut(s) 501
SfuI TTCGAA 1 cut(s) 395
SlaI CTCGAG 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 501
SmoI CTYRAG 1 cut(s) 501
Sse9I AATT 3 cut(s) 75, 156, 391
SsiI CCGC 1 cut(s) 220
StyD4I CCNGG 2 cut(s) 163, 248
StyI CCWWGG 2 cut(s) 333, 525
TaaI ACNGT 2 cut(s) 135, 280
TaqI TCGA 5 cut(s) 142, 353, 387, 395, 502
TasI AATT 3 cut(s) 75, 156, 391
TatI WGTACW 2 cut(s) 3, 44
TfiI GAWTC 5 cut(s) 180, 437, 451, 492, 521
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TseI GCWGC 3 cut(s) 11, 151, 284
TspDTI ATGAA 4 cut(s) 333, 371, 389, 450
TspGWI ACGGA 1 cut(s) 504
XhoI CTCGAG 1 cut(s) 501
XmnI GAANNNNTTC 1 cut(s) 450
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.