Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000947

Physical Location & Seq

Genomic Coordinates Forward (+)

31062366 .. 31063258

Gene Structure 893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028983

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGTGAATCTATGCGAGGATTTGTTGGCTGAAATATTGCGTAGACTATCGGAGGAGGATCTGCTGAAATGTCAGAGCGTATCCAAGTCATGGCACCCAGTGATCTCCCGTCTCTGGGTGCAGAGGTTCTGGACCCTGTCTTCATCGCCTGCTCTGGGTCTTTACTTCCGAACCACGACCGCCGGTGTGGAGCCTTCTCGTTACTTGCAAATGATGACAGCCGGTATGCCATCTCTTGTGAATTACATTTCTTTGTACGATTACAGTTACATGGAAGATAACCTCGAAAGAAAACCATCGACACCAGAGTCAAGTTTTCTGAATATGAAGAACACGCAGATTTTTCGACACTGGCAACGGGGAGTCGCTGAGGAATATCTCGACTGTTGCAATGGGTTACTTTTGATATATAAGTCCACCAGTTATCAGTTGTACGTCTGCAACCCTATCACCAGAAGACAATTTGCAATACCTAAAGCTTCCGATCACCACCGCGGTGGGCACTTCTGGGCAGCCTTGGCTTTCGACCCTTGTGAATCATCTAGCCACTATAGAGTTGTTCGAGTTGATTATAGTTGTTCCTTTATCGACATATTTTCATCCCATTCTGGCCGGTGGGTCCGACACAAGCTCGACCACGACCTCACTGAGCTTTGCCGCGGTCGTTTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

225

Amino Acids

26.14

Weight (kDa)

8.1

Isoelectric Point (pI)

52.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	3 - 38	4.5e-07	F-box domain
F-box-like	PF12937	6 - 41	3.1e-06	F-box-like
FBA_1	PF07734	127 - 209	1.2e-07	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14071 FvH4_1g14191
malus_domestica	MD12G1051600.v1.1 MD12G1211200.v1.1 MD15G1028800.v1.1 MD15G1268400.v1.1
prunus_persica	Prupe.7G151200_v2.0.a1 Prupe.7G151200_v2.0.a1
pyrus_communis	pycom02g12120 pycom12g06960 pycom15g23320
rosa_chinensis	RchiOBHm_Chr2g0102561 RchiOBHm_Chr2g0102901
rosa_laevigata	RLG00000017149 RLG00000017152 RLG00000017154 RLG00000017156 RLG00000017167 RLG00000017168 RLG00000017170 RLG00000017172 RLG00000017173 RLG00000017175 RLG00000028983 RLG00000028984
rosa_multiflora	Rmu_sc0000388.1_g000052 Rmu_sc0000474.1_g000001 Rmu_sc0002077.1_g000009 Rmu_sc0002077.1_g000013 Rmu_sc0003804.1_g000016 Rmu_sc0003804.1_g000017 Rmu_sc0003804.1_g000032 Rmu_sc0005579.1_g000011 Rmu_sc0005881.1_g000007 Rmu_sc0005881.1_g000008 Rmu_sc0006537.1_g000002 Rmu_sc0008034.1_g000006 Rmu_sc0013762.1_g000002
rosa_roxburghii	Rroxscaffold_2G00140470 Rroxscaffold_2G00140500 Rroxscaffold_4G00310850 Rroxscaffold_4G00310900
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108900 Rorug02G0109000 Rorug02G0109100
rosa_samantha	Rh1BG085900 Rh2AG155400 Rh2AG156100 Rh2AG156500 Rh2AG156700 Rh2BG162400 Rh2CG161400 Rh2CG161800 Rh2CG163300 Rh2CG163500 Rh2CG165100 Rh2DG161000 Rh2DG161600 Rh2DG162000 Rh5BG333000
rosa_wichuraiana	Rw2G012160 Rw2G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	93
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	43
AccII	CGCG	2 cut(s)	495, 660
AciI	CCGC	5 cut(s)	180, 493, 495, 658, 660
AclWI	GGATC	1 cut(s)	66
AcoI	YGGCCR	1 cut(s)	610
AdeI	CACNNNGTG	1 cut(s)	100
AfaI	GTAC	2 cut(s)	257, 434
AfiI	CCNNNNNNNGG	4 cut(s)	90, 114, 115, 155
AleI	CACNNNNGTG	1 cut(s)	495
AluBI	AGCT	3 cut(s)	479, 631, 652
AluI	AGCT	3 cut(s)	479, 631, 652
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	1 cut(s)	66
AoxI	GGCC	1 cut(s)	610
ApeKI	GCWGC	1 cut(s)	512
AspS9I	GGNCC	2 cut(s)	132, 619
AsuHPI	GGTGA	3 cut(s)	16, 442, 479
AvaII	GGWCC	2 cut(s)	132, 619
BaeGI	GKGCMC	1 cut(s)	504
BanI	GGYRCC	1 cut(s)	93
BbsI	GAAGAC	2 cut(s)	132, 463
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	524
BccI	CCATC	2 cut(s)	238, 304
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciVI	GTATCC	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	550
BfuI	GTATCC	1 cut(s)	91
BisI	GCNGC	2 cut(s)	513, 658
BlsI	GCNGC	2 cut(s)	514, 659
Bme18I	GGWCC	2 cut(s)	132, 619
BmgT120I	GGNCC	2 cut(s)	132, 619
BmiI	GGNNCC	4 cut(s)	95, 134, 192, 620
BmrI	ACTGGG	1 cut(s)	92
BmuI	ACTGGG	1 cut(s)	92
BpiI	GAAGAC	2 cut(s)	132, 463
Bpu10I	CCTNAGC	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	493, 516, 658
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 114, 115, 155
Bse118I	RCCGGY	3 cut(s)	182, 221, 612
Bse1I	ACTGG	3 cut(s)	98, 356, 420
Bse3DI	GCAATG	1 cut(s)	397
BseDI	CCNNGG	3 cut(s)	493, 516, 658
BseGI	GGATG	1 cut(s)	599
BseLI	CCNNNNNNNGG	4 cut(s)	90, 114, 115, 155
BseMI	GCAATG	1 cut(s)	397
BseMII	CTCAG	2 cut(s)	360, 639
BseNI	ACTGG	3 cut(s)	98, 356, 420
BseRI	GAGGAG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	504
BseXI	GCAGC	1 cut(s)	524
BsgI	GTGCAG	1 cut(s)	140
Bsh1236I	CGCG	2 cut(s)	495, 660
Bsh1285I	CGRYCG	2 cut(s)	180, 664
BshFI	GGCC	1 cut(s)	612
BshNI	GGYRCC	1 cut(s)	93
BsiEI	CGRYCG	2 cut(s)	180, 664
BsiSI	CCGG	3 cut(s)	183, 222, 613
BslI	CCNNNNNNNGG	4 cut(s)	90, 114, 115, 155
BsmAI	GTCTC	1 cut(s)	116
BsmBI	CGTCTC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	612
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	3 cut(s)	58, 102, 484
BspACI	CCGC	5 cut(s)	180, 493, 495, 658, 660
BspANI	GGCC	1 cut(s)	612
BspCNI	CTCAG	2 cut(s)	361, 640
BspFNI	CGCG	2 cut(s)	495, 660
BspLI	GGNNCC	4 cut(s)	95, 134, 192, 620
BspPI	GGATC	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	397
BsrFI	RCCGGY	3 cut(s)	182, 221, 612
BsrI	ACTGG	3 cut(s)	98, 356, 420
BssAI	RCCGGY	3 cut(s)	182, 221, 612
BssECI	CCNNGG	3 cut(s)	493, 516, 658
BssMI	GATC	3 cut(s)	58, 102, 484
BssT1I	CCWWGG	1 cut(s)	516
Bst4CI	ACNGT	2 cut(s)	266, 386
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	2 cut(s)	369, 648
BstDSI	CCRYGG	2 cut(s)	493, 658
BstF5I	GGATG	1 cut(s)	599
BstFNI	CGCG	2 cut(s)	495, 660
BstKTI	GATC	3 cut(s)	61, 105, 487
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	3 cut(s)	58, 102, 484
BstMCI	CGRYCG	2 cut(s)	180, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstSFI	CTRYAG	1 cut(s)	550
BstSLI	GKGCMC	1 cut(s)	504
BstUI	CGCG	2 cut(s)	495, 660
BstV1I	GCAGC	1 cut(s)	524
BstV2I	GAAGAC	2 cut(s)	132, 463
BstX2I	RGATCY	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	58
BsuI	GTATCC	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	612
BtgI	CCRYGG	2 cut(s)	493, 658
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	599
BtsIMutI	CAGTG	3 cut(s)	105, 349, 645
Cac8I	GCNNGC	1 cut(s)	150
Cfr10I	RCCGGY	3 cut(s)	182, 221, 612
Cfr13I	GGNCC	2 cut(s)	132, 619
Cfr42I	CCGCGG	2 cut(s)	496, 661
Csp6I	GTAC	2 cut(s)	256, 433
CviAII	CATG	2 cut(s)	90, 271
CviQI	GTAC	2 cut(s)	256, 433
DdeI	CTNAG	2 cut(s)	369, 648
DpnI	GATC	3 cut(s)	60, 104, 486
DpnII	GATC	3 cut(s)	58, 102, 484
DraIII	CACNNNGTG	1 cut(s)	100
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	610
Eco130I	CCWWGG	1 cut(s)	516
Eco47I	GGWCC	2 cut(s)	132, 619
EcoT14I	CCWWGG	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	2 cut(s)	93, 274
FatI	CATG	2 cut(s)	89, 270
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	513, 658
FokI	GGATG	1 cut(s)	586
Fsp4HI	GCNGC	2 cut(s)	513, 658
FspBI	CTAG	1 cut(s)	543
GluI	GCNGC	2 cut(s)	513, 658
HaeIII	GGCC	1 cut(s)	612
HapII	CCGG	3 cut(s)	183, 222, 613
Hin1II	CATG	2 cut(s)	93, 274
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	4 cut(s)	7, 308, 363, 536
HpaII	CCGG	3 cut(s)	183, 222, 613
HphI	GGTGA	3 cut(s)	16, 442, 479
Hpy166II	GTNNAC	2 cut(s)	44, 417
Hpy188I	TCNGA	6 cut(s)	52, 75, 170, 321, 484, 623
Hpy188III	TCNNGA	2 cut(s)	130, 380
Hpy8I	GTNNAC	2 cut(s)	44, 417
HpyAV	CCTTC	1 cut(s)	204
HpyCH4III	ACNGT	2 cut(s)	266, 386
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	5 cut(s)	121, 208, 390, 441, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	2 cut(s)	369, 648
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	2 cut(s)	93, 274
KspI	CCGCGG	2 cut(s)	496, 661
Kzo9I	GATC	3 cut(s)	58, 102, 484
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	1 cut(s)	524
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	3 cut(s)	200, 266, 396
MalI	GATC	3 cut(s)	60, 104, 486
MboI	GATC	3 cut(s)	58, 102, 484
MboII	GAAGA	4 cut(s)	132, 287, 340, 468
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	504
MluCI	AATT	2 cut(s)	241, 461
MlyI	GAGTC	2 cut(s)	317, 372
MmeI	TCCRAC	1 cut(s)	646
MnlI	CCTC	7 cut(s)	10, 46, 49, 117, 293, 364, 653
MslI	CAYNNNNRTG	1 cut(s)	495
MspA1I	CMGCKG	2 cut(s)	495, 660
MspI	CCGG	3 cut(s)	183, 222, 613
MvnI	CGCG	2 cut(s)	495, 660
MwoI	GCNNNNNNNGC	1 cut(s)	518
NdeII	GATC	3 cut(s)	58, 102, 484
NlaIII	CATG	2 cut(s)	93, 274
NlaIV	GGNNCC	4 cut(s)	95, 134, 192, 620
OliI	CACNNNNGTG	1 cut(s)	495
PfeI	GAWTC	2 cut(s)	7, 536
PflFI	GACNNNGTC	1 cut(s)	136
PflMI	CCANNNNNTGG	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	514, 659
PleI	GAGTC	2 cut(s)	316, 371
PpsI	GAGTC	2 cut(s)	316, 371
PspN4I	GGNNCC	4 cut(s)	95, 134, 192, 620
PspPI	GGNCC	2 cut(s)	132, 619
PsuI	RGATCY	1 cut(s)	58
PsyI	GACNNNGTC	1 cut(s)	136
RsaI	GTAC	2 cut(s)	257, 434
RsaNI	GTAC	2 cut(s)	256, 433
RseI	CAYNNNNRTG	1 cut(s)	495
SacII	CCGCGG	2 cut(s)	496, 661
SatI	GCNGC	2 cut(s)	513, 658
Sau3AI	GATC	3 cut(s)	58, 102, 484
Sau96I	GGNCC	2 cut(s)	132, 619
SchI	GAGTC	2 cut(s)	317, 372
SduI	GDGCHC	1 cut(s)	504
SetI	ASST	8 cut(s)	128, 285, 438, 475, 481, 633, 645, 654
SfcI	CTRYAG	1 cut(s)	550
Sfr303I	CCGCGG	2 cut(s)	496, 661
SgrAI	CRCCGGYG	1 cut(s)	182
SgrBI	CCGCGG	2 cut(s)	496, 661
SinI	GGWCC	2 cut(s)	132, 619
SmiMI	CAYNNNNRTG	1 cut(s)	495
Sse9I	AATT	2 cut(s)	241, 461
SsiI	CCGC	5 cut(s)	180, 493, 495, 658, 660
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	1 cut(s)	543
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	2 cut(s)	266, 386
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	8 cut(s)	285, 299, 346, 381, 525, 562, 588, 633
TasI	AATT	2 cut(s)	241, 461
TauI	GCSGC	1 cut(s)	660
TfiI	GAWTC	2 cut(s)	7, 536
TscAI	CASTG	3 cut(s)	105, 356, 652
TseI	GCWGC	1 cut(s)	512
TspDTI	ATGAA	3 cut(s)	132, 341, 588
TspRI	CASTG	3 cut(s)	105, 356, 652
Tth111I	GACNNNGTC	1 cut(s)	136
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	2 cut(s)	132, 619
XmiI	GTMKAC	1 cut(s)	43
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.