Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005881.1

Orthogroup ID

OG0000947

Physical Location & Seq

Genomic Coordinates Reverse (-)

52853 .. 54207

Gene Structure 1355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005881.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atgaaccaaaatgatatcatcagaagctgcgaaggaagcgatgactggagttgtggagtgcgatcagctgcaacgggcactggtagaatgacatcgtctgatccccgtggatcgggggcgagaatagggttgcaggcacctaaacacagactttccgactgcttggtgtctgtggcgtgtccagacaaggtcgatgcgattcggagcctctgtggtttcgttgtgctgggtagattttgggcgcagtcccctcctttgggtcttttcttccgcaccaccagcaccaccaccgtagacaaggtattgcatcgtatgaattatatctcttcatataattatcatgccatggaagataacctgcaaagcactcgttcttgcggaggtcaattttatgacgaagaatcgtataggtccaaaaagtctcattggcagtattttgatcgacaatggtataagccgggtgccactgctgaatccactgatcgtgatgagtacataaatggttgcaatggtttagttttgttaatgaaatcaacaacttatcagttttatgtttgcaatcccatcacaagacaacaagttgccatacctaaagcctgtgtccaccaaaaccatgatgatcagcatttttgtgctgctttggcttttgacccttccgaatctgctcatcacttcagagttgttagaattgattattctgcaccctactcagctgtgctggatatattctcgtctgaatatggactgtgggttcgacattggctgcaaattgacccaggttttactgagggattcaaaagctccaagttgtgcaggcattttgtttacttgcgaggtaggctatacagcatagccctatcctggaaccttttatgcattgacctcaatactgttgcagcttctgcccttgaacttccggttccagaggatgaaaagaccggagccatgggatgtcttggggtgtcgatgaatagtctctgcaatatgaatgctcgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

332

Amino Acids

37.32

Weight (kDa)

7.12

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14071 FvH4_1g14191
malus_domestica	MD12G1051600.v1.1 MD12G1211200.v1.1 MD15G1028800.v1.1 MD15G1268400.v1.1
prunus_persica	Prupe.7G151200_v2.0.a1 Prupe.7G151200_v2.0.a1
pyrus_communis	pycom02g12120 pycom12g06960 pycom15g23320
rosa_chinensis	RchiOBHm_Chr2g0102561 RchiOBHm_Chr2g0102901
rosa_laevigata	RLG00000017149 RLG00000017152 RLG00000017154 RLG00000017156 RLG00000017167 RLG00000017168 RLG00000017170 RLG00000017172 RLG00000017173 RLG00000017175 RLG00000028983 RLG00000028984
rosa_multiflora	Rmu_sc0000388.1_g000052 Rmu_sc0000474.1_g000001 Rmu_sc0002077.1_g000009 Rmu_sc0002077.1_g000013 Rmu_sc0003804.1_g000016 Rmu_sc0003804.1_g000017 Rmu_sc0003804.1_g000032 Rmu_sc0005579.1_g000011 Rmu_sc0005881.1_g000007 Rmu_sc0005881.1_g000008 Rmu_sc0006537.1_g000002 Rmu_sc0008034.1_g000006 Rmu_sc0013762.1_g000002
rosa_roxburghii	Rroxscaffold_2G00140470 Rroxscaffold_2G00140500 Rroxscaffold_4G00310850 Rroxscaffold_4G00310900
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108900 Rorug02G0109000 Rorug02G0109100
rosa_samantha	Rh1BG085900 Rh2AG155400 Rh2AG156100 Rh2AG156500 Rh2AG156700 Rh2BG162400 Rh2CG161400 Rh2CG161800 Rh2CG163300 Rh2CG163500 Rh2CG165100 Rh2DG161000 Rh2DG161600 Rh2DG162000 Rh5BG333000
rosa_wichuraiana	Rw2G012160 Rw2G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	366
AccB1I	GGYRCC	2 cut(s)	136, 461
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	2 cut(s)	271, 378
AclWI	GGATC	2 cut(s)	95, 118
AcuI	CTGAAG	1 cut(s)	658
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	4 cut(s)	112, 256, 257, 861
AgsI	TTSAA	2 cut(s)	796, 911
AjnI	CCWGG	2 cut(s)	775, 860
AloI	GAACNNNNNNTCC	2 cut(s)	735, 767
AluBI	AGCT	5 cut(s)	27, 68, 713, 801, 899
AluI	AGCT	5 cut(s)	27, 68, 713, 801, 899
Alw26I	GTCTC	2 cut(s)	426, 980
AlwI	GGATC	2 cut(s)	95, 118
AlwNI	CAGNNNCTG	2 cut(s)	27, 902
ApeKI	GCWGC	5 cut(s)	27, 68, 635, 763, 896
ArsI	GACNNNNNNTTYG	2 cut(s)	735, 767
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	411
AsuC2I	CCSGG	1 cut(s)	459
AvaII	GGWCC	1 cut(s)	411
BaeGI	GKGCMC	1 cut(s)	80
BanI	GGYRCC	2 cut(s)	136, 461
BbvI	GCAGC	5 cut(s)	14, 55, 622, 750, 908
BccI	CCATC	1 cut(s)	572
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BciT130I	CCWGG	2 cut(s)	777, 862
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	459
BcoDI	GTCTC	2 cut(s)	426, 980
BfuAI	ACCTGC	1 cut(s)	366
BisI	GCNGC	5 cut(s)	28, 69, 636, 764, 897
BlsI	GCNGC	5 cut(s)	29, 70, 637, 765, 898
Bme1390I	CCNGG	3 cut(s)	459, 777, 862
Bme18I	GGWCC	1 cut(s)	411
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	6 cut(s)	138, 206, 463, 866, 921, 943
BmrFI	CCNGG	3 cut(s)	459, 777, 862
BmsI	GCATC	2 cut(s)	184, 316
BpmI	CTGGAG	1 cut(s)	67
BpuMI	CCSGG	1 cut(s)	459
BsaJI	CCNNGG	4 cut(s)	106, 345, 775, 945
BsaWI	WCCGGW	2 cut(s)	916, 938
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 256, 257, 861
Bse1I	ACTGG	2 cut(s)	50, 85
Bse3DI	GCAATG	1 cut(s)	514
BseBI	CCWGG	2 cut(s)	777, 862
BseDI	CCNNGG	4 cut(s)	106, 345, 775, 945
BseGI	GGATG	2 cut(s)	934, 956
BseLI	CCNNNNNNNGG	4 cut(s)	112, 256, 257, 861
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	2 cut(s)	723, 777
BseNI	ACTGG	2 cut(s)	50, 85
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	5 cut(s)	14, 55, 622, 750, 908
BseYI	CCCAGC	1 cut(s)	226
BsgI	GTGCAG	2 cut(s)	684, 832
BshNI	GGYRCC	2 cut(s)	136, 461
BsiSI	CCGG	3 cut(s)	458, 917, 939
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	4 cut(s)	112, 256, 257, 861
BsmAI	GTCTC	2 cut(s)	426, 980
BsmFI	GGGAC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	994
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	6 cut(s)	62, 100, 110, 439, 481, 619
Bsp19I	CCATGG	2 cut(s)	345, 945
BspACI	CCGC	2 cut(s)	271, 378
BspCNI	CTCAG	2 cut(s)	722, 778
BspLI	GGNNCC	6 cut(s)	138, 206, 463, 866, 921, 943
BspMI	ACCTGC	1 cut(s)	366
BspPI	GGATC	2 cut(s)	95, 118
BspT107I	GGYRCC	2 cut(s)	136, 461
BsrDI	GCAATG	1 cut(s)	514
BsrI	ACTGG	2 cut(s)	50, 85
BssECI	CCNNGG	4 cut(s)	106, 345, 775, 945
BssMI	GATC	6 cut(s)	62, 100, 110, 439, 481, 619
BssT1I	CCWWGG	2 cut(s)	345, 945
Bst2UI	CCWGG	2 cut(s)	777, 862
Bst4CI	ACNGT	3 cut(s)	292, 747, 892
Bst6I	CTCTTC	1 cut(s)	331
BstAPI	GCANNNNNTGC	1 cut(s)	902
BstC8I	GCNNGC	2 cut(s)	135, 815
BstDEI	CTNAG	2 cut(s)	709, 786
BstDSI	CCRYGG	3 cut(s)	106, 345, 945
BstF5I	GGATG	2 cut(s)	934, 956
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	6 cut(s)	65, 103, 113, 442, 484, 622
BstMAI	GTCTC	2 cut(s)	426, 980
BstMBI	GATC	6 cut(s)	62, 100, 110, 439, 481, 619
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 279, 641, 838, 902
BstNI	CCWGG	2 cut(s)	777, 862
BstSCI	CCNGG	3 cut(s)	457, 775, 860
BstSLI	GKGCMC	1 cut(s)	80
BstV1I	GCAGC	5 cut(s)	14, 55, 622, 750, 908
BtgI	CCRYGG	3 cut(s)	106, 345, 945
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	934, 956
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	3 cut(s)	78, 465, 477
BveI	ACCTGC	1 cut(s)	366
Cac8I	GCNNGC	2 cut(s)	135, 815
CaiI	CAGNNNCTG	2 cut(s)	27, 902
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	411
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	4 cut(s)	341, 346, 614, 946
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	2 cut(s)	709, 786
DpnI	GATC	6 cut(s)	64, 102, 112, 441, 483, 621
DpnII	GATC	6 cut(s)	62, 100, 110, 439, 481, 619
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
Eco130I	CCWWGG	2 cut(s)	345, 945
Eco32I	GATATC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	658
EcoRII	CCWGG	2 cut(s)	775, 860
EcoRV	GATATC	1 cut(s)	16
EcoT14I	CCWWGG	2 cut(s)	345, 945
EcoT22I	ATGCAT	1 cut(s)	878
ErhI	CCWWGG	2 cut(s)	345, 945
FaeI	CATG	4 cut(s)	344, 349, 617, 949
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	4 cut(s)	340, 345, 613, 945
FbaI	TGATCA	1 cut(s)	619
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	5 cut(s)	28, 69, 636, 764, 897
FokI	GGATG	2 cut(s)	941, 963
Fsp4HI	GCNGC	5 cut(s)	28, 69, 636, 764, 897
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	5 cut(s)	28, 69, 636, 764, 897
GsaI	CCCAGC	1 cut(s)	230
GsuI	CTGGAG	1 cut(s)	67
HapII	CCGG	3 cut(s)	458, 917, 939
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	4 cut(s)	344, 349, 617, 949
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	5 cut(s)	199, 401, 473, 659, 792
HpaII	CCGG	3 cut(s)	458, 917, 939
Hpy166II	GTNNAC	3 cut(s)	295, 604, 826
Hpy188I	TCNGA	7 cut(s)	23, 100, 157, 204, 658, 677, 736
Hpy188III	TCNNGA	3 cut(s)	182, 485, 923
Hpy8I	GTNNAC	3 cut(s)	295, 604, 826
HpyAV	CCTTC	2 cut(s)	26, 663
HpyCH4III	ACNGT	3 cut(s)	292, 747, 892
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 279, 641, 838, 902
HpyF3I	CTNAG	2 cut(s)	709, 786
Hsp92II	CATG	4 cut(s)	344, 349, 617, 949
HspAI	GCGC	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	6 cut(s)	62, 100, 110, 439, 481, 619
LmnI	GCTCC	3 cut(s)	204, 806, 941
Lsp1109I	GCAGC	5 cut(s)	14, 55, 622, 750, 908
LweI	GCATC	2 cut(s)	184, 316
MalI	GATC	6 cut(s)	64, 102, 112, 441, 483, 621
MboI	GATC	6 cut(s)	62, 100, 110, 439, 481, 619
MboII	GAAGA	4 cut(s)	259, 318, 362, 410
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	5 cut(s)	316, 334, 386, 687, 768
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	7 cut(s)	218, 261, 374, 781, 827, 893, 919
Mph1103I	ATGCAT	1 cut(s)	878
MseI	TTAA	1 cut(s)	524
MslI	CAYNNNNRTG	1 cut(s)	630
MspA1I	CMGCKG	2 cut(s)	68, 713
MspI	CCGG	3 cut(s)	458, 917, 939
MspR9I	CCNGG	3 cut(s)	459, 777, 862
Mva1269I	GAATGC	1 cut(s)	994
MvaI	CCWGG	2 cut(s)	777, 862
MwoI	GCNNNNNNNGC	5 cut(s)	36, 279, 641, 838, 902
NciI	CCSGG	1 cut(s)	459
NcoI	CCATGG	2 cut(s)	345, 945
NdeII	GATC	6 cut(s)	62, 100, 110, 439, 481, 619
NlaIII	CATG	4 cut(s)	344, 349, 617, 949
NlaIV	GGNNCC	6 cut(s)	138, 206, 463, 866, 921, 943
NsiI	ATGCAT	1 cut(s)	878
PctI	GAATGC	1 cut(s)	994
PfeI	GAWTC	5 cut(s)	199, 401, 473, 659, 792
PflFI	GACNNNGTC	2 cut(s)	94, 188
PfoI	TCCNGGA	1 cut(s)	860
PkrI	GCNGC	5 cut(s)	29, 70, 637, 765, 898
Psp6I	CCWGG	2 cut(s)	775, 860
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	2 cut(s)	775, 860
PspN4I	GGNNCC	6 cut(s)	138, 206, 463, 866, 921, 943
PspPI	GGNCC	1 cut(s)	411
PstNI	CAGNNNCTG	2 cut(s)	27, 902
PsyI	GACNNNGTC	2 cut(s)	94, 188
PvuII	CAGCTG	2 cut(s)	68, 713
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	630
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	5 cut(s)	28, 69, 636, 764, 897
Sau3AI	GATC	6 cut(s)	62, 100, 110, 439, 481, 619
Sau96I	GGNCC	1 cut(s)	411
ScrFI	CCNGG	3 cut(s)	459, 777, 862
SduI	GDGCHC	1 cut(s)	80
SfaNI	GCATC	2 cut(s)	184, 316
SinI	GGWCC	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	630
Sse9I	AATT	5 cut(s)	316, 334, 386, 687, 768
SsiI	CCGC	2 cut(s)	271, 378
StyD4I	CCNGG	3 cut(s)	457, 775, 860
StyI	CCWWGG	2 cut(s)	345, 945
TaaI	ACNGT	3 cut(s)	292, 747, 892
TaqI	TCGA	5 cut(s)	192, 442, 754, 965, 994
TasI	AATT	5 cut(s)	316, 334, 386, 687, 768
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	5 cut(s)	199, 401, 473, 659, 792
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	3 cut(s)	85, 472, 484
TseI	GCWGC	5 cut(s)	27, 68, 635, 763, 896
TspDTI	ATGAA	6 cut(s)	17, 318, 329, 542, 945, 983
TspRI	CASTG	3 cut(s)	85, 472, 484
Tth111I	GACNNNGTC	2 cut(s)	94, 188
VpaK11BI	GGWCC	1 cut(s)	411
XmiI	GTMKAC	1 cut(s)	294
Zsp2I	ATGCAT	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.