RLG00000017154

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000947
Physical Location & Seq
Forward (+)
13461856 .. 13463323
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017154

Sequence Viewer

Length: 1371 bp
ATGGGGATTTTTTGCAAGGATTTGTGGGTTGAGATCTTGGGTAGATTGTCATCTGAGAAAGACTTGGTGCCATGCATGAGTGTGTCCAAGTTATGGCACAGAATAGCATCAGATCTTTGGGTGAGGAGATTTTGGGCGCAATCGCCTCCTTTGGGTGTTTACTTTCGCACCATCCAGAATCCTTCGAGTCCTTTCATGCTCACCGTGGTGGACAAGGTGCCGTCTTATTTGCCTAGCATTAATTATATCTCTCTATATAATTATCATAACATGGATGATAATCTCGAAAGCACTAGCGGTTATCATCTCTGTACGTTATTTAATGGCTTAAGTTACCTGTTTGAGTGCTATAAGCGAGTTTGGCAATTTTATCGACATTATAAACACGATCACGATGATCATGATGATCAGTATCTACACGGCTGCAATGGATTACTTCTGTTATTGAAATCGGGAACTTATCAGTTTTATGTGTGCAATCCCATTACCACACAACAAGTCCCCATACCTAAAGCTTGTGTCCACCAAAACGACCATGAGCATTTTTGTGTTGCCTTGGCTTTTGACCCTTCTGAATCTCCTCATCACTACAGAGTTGTGAGGATTGATTTCTCTGAATTCGTTTCATCTACCTCAAACTCTGTCATGTTTGACATATTTTCATATATATACGGACAGTGGGTTCGACATAGGTTGCAACTTGACCCAGGTTTTACTGAGGGGTTTAAAAAGCTTCAGCCCTTGAACTCCCTGTCCCGGAGGCCAATAAGACCGGAGCGATGGGGTGTCTTGGGGTGTCTATATATGGACCTTCTCTGCTATATAAAGCGTATGCCTTCCAGTAAGTTCCACGATCTGGTAGTTTGGTACTATGATGATCGTTGTGAATCTAGTGAATGGACTCGCAGATATAATGTTAGTTGCGGCTTGTTGGGATATGGAATAAAGTATCAAGGGTATGATTATGATGATACTGTGGAACCCTATGCAATAAGTCCTAGTTCTGATGTCTTGTTCTTTGGCACTCCCAACTTGATTAGTTGCTACCACCTCAAAAGCAAAAAGTACAAGCCCGTGTGTCACCTATCTGCCTCTAAAATTGTACCTGATTACTTCTGGGTATTGCGTGCTTGCTTCGTACCTTTCTACCAGTTAGGAAACAAAGCAGTGGTTCCTGAGGGGAAGGGCATAGAAATCTTGACTGCAGAAGCACAATGTGAAGAAGAGAAAGATGTTGACAAAGTTGAAGTGATAAACGTCAAATTATGTGATCGTCATAAAAAGCCGTTGCCACCGTTGATTTATCCTAGCGAAATTACTGAAATGTATTTGGAATTTGAGCATCCCAATTACGGCTCTTATTTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

457

Amino Acids

53.36

Weight (kDa)

6.44

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 7 - 44 2.6e-06 F-box-like
FBA_1 PF07734 134 - 222 2.5e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AccB1I GGYRCC 2 cut(s) 67, 217
AccB7I CCANNNNNTGG 2 cut(s) 93, 856
AciI CCGC 2 cut(s) 297, 924
AcsI RAATTY 2 cut(s) 617, 1334
AcuI CTGAAG 1 cut(s) 719
AdeI CACNNNGTG 1 cut(s) 1217
AfaI GTAC 5 cut(s) 313, 869, 1067, 1104, 1140
AfiI CCNNNNNNNGG 5 cut(s) 93, 152, 756, 856, 1352
AflII CTTAAG 1 cut(s) 328
AgsI TTSAA 3 cut(s) 448, 745, 1247
AjnI CCWGG 1 cut(s) 706
AleI CACNNNNGTG 1 cut(s) 206
AloI GAACNNNNNNTCC 4 cut(s) 666, 698, 737, 769
AluBI AGCT 2 cut(s) 515, 733
AluI AGCT 2 cut(s) 515, 733
AoxI GGCC 1 cut(s) 761
ApeKI GCWGC 1 cut(s) 423
ApoI RAATTY 2 cut(s) 617, 1334
ArsI GACNNNNNNTTYG 2 cut(s) 666, 698
AseI ATTAAT 1 cut(s) 240
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 808
AsuC2I CCSGG 1 cut(s) 757
AsuHPI GGTGA 3 cut(s) 133, 193, 1073
AvaII GGWCC 1 cut(s) 808
AxyI CCTNAGG 1 cut(s) 1176
BanI GGYRCC 2 cut(s) 67, 217
BbvI GCAGC 1 cut(s) 410
BccI CCATC 2 cut(s) 179, 774
BceAI ACGGC 4 cut(s) 205, 436, 1270, 1369
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciT130I CCWGG 1 cut(s) 708
BclI TGATCA 2 cut(s) 397, 406
BcnI CCSGG 1 cut(s) 757
BfaI CTAG 5 cut(s) 234, 294, 891, 999, 1308
BfmI CTRYAG 2 cut(s) 589, 1203
BfrI CTTAAG 1 cut(s) 328
BglII AGATCT 2 cut(s) 33, 112
BisI GCNGC 2 cut(s) 424, 925
BlsI GCNGC 2 cut(s) 425, 926
Bme1390I CCNGG 2 cut(s) 708, 757
Bme18I GGWCC 1 cut(s) 808
BmgT120I GGNCC 1 cut(s) 808
BmiI GGNNCC 4 cut(s) 69, 219, 981, 1173
BmrFI CCNGG 2 cut(s) 708, 757
BmsI GCATC 2 cut(s) 116, 1351
BpuMI CCSGG 1 cut(s) 757
BsaBI GATNNNNATC 3 cut(s) 49, 279, 411
BsaJI CCNNGG 3 cut(s) 204, 555, 706
BsaWI WCCGGW 1 cut(s) 772
Bsc4I CCNNNNNNNGG 5 cut(s) 93, 152, 756, 856, 1352
Bse1I ACTGG 2 cut(s) 840, 1150
Bse21I CCTNAGG 1 cut(s) 1176
Bse3DI GCAATG 1 cut(s) 433
Bse8I GATNNNNATC 3 cut(s) 49, 279, 411
BseBI CCWGG 1 cut(s) 708
BseDI CCNNGG 3 cut(s) 204, 555, 706
BseGI GGATG 3 cut(s) 171, 280, 1342
BseJI GATNNNNATC 3 cut(s) 49, 279, 411
BseLI CCNNNNNNNGG 5 cut(s) 93, 152, 756, 856, 1352
BseMI GCAATG 1 cut(s) 433
BseMII CTCAG 3 cut(s) 45, 708, 1167
BseNI ACTGG 2 cut(s) 840, 1150
BseRI GAGGAG 2 cut(s) 139, 570
BseXI GCAGC 1 cut(s) 410
BshFI GGCC 1 cut(s) 763
BshNI GGYRCC 2 cut(s) 67, 217
BsiSI CCGG 2 cut(s) 757, 773
BslFI GGGAC 2 cut(s) 485, 739
BslI CCNNNNNNNGG 5 cut(s) 93, 152, 756, 856, 1352
BsmFI GGGAC 2 cut(s) 485, 739
BsnI GGCC 1 cut(s) 763
Bsp143I GATC 8 cut(s) 33, 112, 388, 397, 406, 853, 877, 1270
BspACI CCGC 2 cut(s) 297, 924
BspANI GGCC 1 cut(s) 763
BspCNI CTCAG 3 cut(s) 46, 709, 1168
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 4 cut(s) 69, 219, 981, 1173
BspMAI CTGCAG 1 cut(s) 1207
BspT107I GGYRCC 2 cut(s) 67, 217
BspTI CTTAAG 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 433
BsrI ACTGG 2 cut(s) 840, 1150
BssECI CCNNGG 3 cut(s) 204, 555, 706
BssMI GATC 8 cut(s) 33, 112, 388, 397, 406, 853, 877, 1270
BssT1I CCWWGG 1 cut(s) 555
Bst2UI CCWGG 1 cut(s) 708
Bst4CI ACNGT 4 cut(s) 205, 678, 976, 1296
Bst6I CTCTTC 1 cut(s) 1218
BstAFI CTTAAG 1 cut(s) 328
BstC8I GCNNGC 2 cut(s) 1128, 1132
BstDEI CTNAG 3 cut(s) 54, 717, 1176
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 3 cut(s) 171, 280, 1342
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 8 cut(s) 36, 115, 391, 400, 409, 856, 880, 1273
BstMBI GATC 8 cut(s) 33, 112, 388, 397, 406, 853, 877, 1270
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNI CCWGG 1 cut(s) 708
BstSCI CCNGG 2 cut(s) 706, 755
BstSFI CTRYAG 2 cut(s) 589, 1203
BstV1I GCAGC 1 cut(s) 410
BstX2I RGATCY 2 cut(s) 33, 112
BstYI RGATCY 2 cut(s) 33, 112
Bsu36I CCTNAGG 1 cut(s) 1176
BsuRI GGCC 1 cut(s) 763
BtgI CCRYGG 1 cut(s) 204
BtgZI GCGATG 1 cut(s) 793
BtsCI GGATG 3 cut(s) 171, 280, 1342
BtsI GCAGTG 1 cut(s) 1173
BtsIMutI CAGTG 2 cut(s) 683, 1173
Cac8I GCNNGC 2 cut(s) 1128, 1132
CciI TCATGA 1 cut(s) 400
CfoI GCGC 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 808
Csp6I GTAC 5 cut(s) 312, 868, 1066, 1103, 1139
CviAII CATG 7 cut(s) 72, 76, 196, 271, 401, 536, 646
CviQI GTAC 5 cut(s) 312, 868, 1066, 1103, 1139
DdeI CTNAG 3 cut(s) 54, 717, 1176
DpnI GATC 8 cut(s) 35, 114, 390, 399, 408, 855, 879, 1272
DpnII GATC 8 cut(s) 33, 112, 388, 397, 406, 853, 877, 1270
DraI TTTAAA 1 cut(s) 727
DraIII CACNNNGTG 1 cut(s) 1217
Eam1104I CTCTTC 1 cut(s) 1218
EarI CTCTTC 1 cut(s) 1218
Eco130I CCWWGG 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 808
Eco57I CTGAAG 1 cut(s) 719
Eco81I CCTNAGG 1 cut(s) 1176
EcoRI GAATTC 1 cut(s) 617
EcoRII CCWGG 1 cut(s) 706
EcoT14I CCWWGG 1 cut(s) 555
EcoT22I ATGCAT 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 7 cut(s) 75, 79, 199, 274, 404, 539, 649
FaqI GGGAC 2 cut(s) 485, 739
FatI CATG 7 cut(s) 71, 75, 195, 270, 400, 535, 645
FbaI TGATCA 2 cut(s) 397, 406
Fnu4HI GCNGC 2 cut(s) 424, 925
FokI GGATG 3 cut(s) 158, 287, 1329
Fsp4HI GCNGC 2 cut(s) 424, 925
FspBI CTAG 5 cut(s) 234, 294, 891, 999, 1308
GlaI GCGC 1 cut(s) 138
GluI GCNGC 2 cut(s) 424, 925
HaeIII GGCC 1 cut(s) 763
HapII CCGG 2 cut(s) 757, 773
HhaI GCGC 1 cut(s) 139
Hin1II CATG 7 cut(s) 75, 79, 199, 274, 404, 539, 649
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 1 cut(s) 1237
HindII GTYRAC 1 cut(s) 1237
HindIII AAGCTT 2 cut(s) 513, 731
HinfI GANTC 5 cut(s) 178, 187, 575, 887, 901
HpaII CCGG 2 cut(s) 757, 773
HphI GGTGA 3 cut(s) 133, 193, 1073
Hpy166II GTNNAC 4 cut(s) 160, 211, 523, 1237
Hpy188I TCNGA 5 cut(s) 55, 112, 574, 616, 1006
Hpy188III TCNNGA 7 cut(s) 175, 284, 392, 401, 453, 1175, 1198
Hpy8I GTNNAC 4 cut(s) 160, 211, 523, 1237
HpyAV CCTTC 5 cut(s) 192, 579, 821, 846, 1177
HpyCH4III ACNGT 4 cut(s) 205, 678, 976, 1296
HpyCH4IV ACGT 2 cut(s) 314, 1257
HpyCH4V TGCA 7 cut(s) 15, 75, 426, 477, 697, 989, 1205
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 3 cut(s) 54, 717, 1176
HpySE526I ACGT 2 cut(s) 314, 1257
Hsp92II CATG 7 cut(s) 75, 79, 199, 274, 404, 539, 649
HspAI GCGC 1 cut(s) 137
Ksp22I TGATCA 2 cut(s) 397, 406
Kzo9I GATC 8 cut(s) 33, 112, 388, 397, 406, 853, 877, 1270
LmnI GCTCC 1 cut(s) 775
Lsp1109I GCAGC 1 cut(s) 410
LweI GCATC 2 cut(s) 116, 1351
MaeI CTAG 5 cut(s) 234, 294, 891, 999, 1308
MaeII ACGT 2 cut(s) 314, 1257
MaeIII GTNAC 2 cut(s) 332, 1079
MalI GATC 8 cut(s) 35, 114, 390, 399, 408, 855, 879, 1272
MboI GATC 8 cut(s) 33, 112, 388, 397, 406, 853, 877, 1270
MboII GAAGA 2 cut(s) 1232, 1235
MflI RGATCY 2 cut(s) 33, 112
MluCI AATT 9 cut(s) 241, 259, 365, 617, 1098, 1262, 1314, 1334, 1348
MlyI GAGTC 2 cut(s) 196, 895
Mph1103I ATGCAT 1 cut(s) 77
MseI TTAA 4 cut(s) 240, 321, 329, 726
MslI CAYNNNNRTG 3 cut(s) 80, 206, 546
MspCI CTTAAG 1 cut(s) 328
MspI CCGG 2 cut(s) 757, 773
MspR9I CCNGG 2 cut(s) 708, 757
MvaI CCWGG 1 cut(s) 708
MwoI GCNNNNNNNGC 1 cut(s) 361
NciI CCSGG 1 cut(s) 757
NdeII GATC 8 cut(s) 33, 112, 388, 397, 406, 853, 877, 1270
NlaIII CATG 7 cut(s) 75, 79, 199, 274, 404, 539, 649
NlaIV GGNNCC 4 cut(s) 69, 219, 981, 1173
NmuCI GTSAC 1 cut(s) 1079
NsiI ATGCAT 1 cut(s) 77
OliI CACNNNNGTG 1 cut(s) 206
PagI TCATGA 1 cut(s) 400
PfeI GAWTC 3 cut(s) 178, 575, 887
PflMI CCANNNNNTGG 2 cut(s) 93, 856
PfoI TCCNGGA 1 cut(s) 755
PkrI GCNGC 2 cut(s) 425, 926
PleI GAGTC 2 cut(s) 195, 895
PpsI GAGTC 2 cut(s) 195, 895
PshBI ATTAAT 1 cut(s) 240
PsiI TTATAA 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 706
PspGI CCWGG 1 cut(s) 706
PspN4I GGNNCC 4 cut(s) 69, 219, 981, 1173
PspPI GGNCC 1 cut(s) 808
PstI CTGCAG 1 cut(s) 1207
PsuI RGATCY 2 cut(s) 33, 112
RsaI GTAC 5 cut(s) 313, 869, 1067, 1104, 1140
RsaNI GTAC 5 cut(s) 312, 868, 1066, 1103, 1139
RseI CAYNNNNRTG 3 cut(s) 80, 206, 546
SaqAI TTAA 4 cut(s) 240, 321, 329, 726
SatI GCNGC 2 cut(s) 424, 925
Sau3AI GATC 8 cut(s) 33, 112, 388, 397, 406, 853, 877, 1270
Sau96I GGNCC 1 cut(s) 808
SchI GAGTC 2 cut(s) 196, 895
ScrFI CCNGG 2 cut(s) 708, 757
SfaNI GCATC 2 cut(s) 116, 1351
SfcI CTRYAG 2 cut(s) 589, 1203
SinI GGWCC 1 cut(s) 808
SmiMI CAYNNNNRTG 3 cut(s) 80, 206, 546
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 9 cut(s) 241, 259, 365, 617, 1098, 1262, 1314, 1334, 1348
SsiI CCGC 2 cut(s) 297, 924
SspMI CTAG 5 cut(s) 234, 294, 891, 999, 1308
StyD4I CCNGG 2 cut(s) 706, 755
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 4 cut(s) 205, 678, 976, 1296
TaiI ACGT 2 cut(s) 317, 1260
TaqI TCGA 4 cut(s) 185, 285, 373, 685
TasI AATT 9 cut(s) 241, 259, 365, 617, 1098, 1262, 1314, 1334, 1348
TatI WGTACW 1 cut(s) 1065
TauI GCSGC 1 cut(s) 927
TfiI GAWTC 3 cut(s) 178, 575, 887
Tru1I TTAA 4 cut(s) 240, 321, 329, 726
Tru9I TTAA 4 cut(s) 240, 321, 329, 726
TscAI CASTG 2 cut(s) 683, 1173
TseFI GTSAC 1 cut(s) 1079
TseI GCWGC 1 cut(s) 423
Tsp45I GTSAC 1 cut(s) 1079
TspDTI ATGAA 3 cut(s) 184, 615, 651
TspGWI ACGGA 1 cut(s) 687
TspRI CASTG 2 cut(s) 683, 1173
Van91I CCANNNNNTGG 2 cut(s) 93, 856
Vha464I CTTAAG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 808
VspI ATTAAT 1 cut(s) 240
XapI RAATTY 2 cut(s) 617, 1334
XspI CTAG 5 cut(s) 234, 294, 891, 999, 1308
Zsp2I ATGCAT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.