Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000947

Physical Location & Seq

Genomic Coordinates Forward (+)

13650723 .. 13651588

Gene Structure 866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017168

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGTGGAGGAGAAGGATGACAGGGATTTGGGTTTTGGGAGTTTCGATGTGCGCAGGCACTTTGTTTACTTGCGGGCCAAGGTAAACAGCATAGCCCTATCCTGGAACCTTTTATGCATTAACCTCAATACTGTTGCAGCTTCTGCCCTTGAACTTCATGTTTCAGAGGATGATAAGAACGGATCTATGGAATGTCTTGGGGTGTCGATGGACCGTCTCTGTTATATGAAGGGAATGCCCGATAATTCGGAGGACTCCTACTATCTGGCAGTCTGGTATTATGATGATGAATCTGGGGAATGGATTCTCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

105

Amino Acids

12.0

Weight (kDa)

4.47

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14071 FvH4_1g14191
malus_domestica	MD12G1051600.v1.1 MD12G1211200.v1.1 MD15G1028800.v1.1 MD15G1268400.v1.1
prunus_persica	Prupe.7G151200_v2.0.a1 Prupe.7G151200_v2.0.a1
pyrus_communis	pycom02g12120 pycom12g06960 pycom15g23320
rosa_chinensis	RchiOBHm_Chr2g0102561 RchiOBHm_Chr2g0102901
rosa_laevigata	RLG00000017149 RLG00000017152 RLG00000017154 RLG00000017156 RLG00000017167 RLG00000017168 RLG00000017170 RLG00000017172 RLG00000017173 RLG00000017175 RLG00000028983 RLG00000028984
rosa_multiflora	Rmu_sc0000388.1_g000052 Rmu_sc0000474.1_g000001 Rmu_sc0002077.1_g000009 Rmu_sc0002077.1_g000013 Rmu_sc0003804.1_g000016 Rmu_sc0003804.1_g000017 Rmu_sc0003804.1_g000032 Rmu_sc0005579.1_g000011 Rmu_sc0005881.1_g000007 Rmu_sc0005881.1_g000008 Rmu_sc0006537.1_g000002 Rmu_sc0008034.1_g000006 Rmu_sc0013762.1_g000002
rosa_roxburghii	Rroxscaffold_2G00140470 Rroxscaffold_2G00140500 Rroxscaffold_4G00310850 Rroxscaffold_4G00310900
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108900 Rorug02G0109000 Rorug02G0109100
rosa_samantha	Rh1BG085900 Rh2AG155400 Rh2AG156100 Rh2AG156500 Rh2AG156700 Rh2BG162400 Rh2CG161400 Rh2CG161800 Rh2CG163300 Rh2CG163500 Rh2CG165100 Rh2DG161000 Rh2DG161600 Rh2DG162000 Rh5BG333000
rosa_wichuraiana	Rw2G012160 Rw2G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	53
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	190
AlwNI	CAGNNNCTG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	137
Asp700I	GAANNNNTTC	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	75, 211
AvaII	GGWCC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	221
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	75, 211
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	2 cut(s)	22, 175
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	149
BshFI	GGCC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	221
BsmBI	CGTCTC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	182
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	107
BspPI	GGATC	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	2 cut(s)	133, 215
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	56, 75
BstDEI	CTNAG	1 cut(s)	308
BstF5I	GGATG	2 cut(s)	22, 175
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	1 cut(s)	185
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	22, 175
Cac8I	GCNNGC	2 cut(s)	56, 75
CaiI	CAGNNNCTG	1 cut(s)	143
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	2 cut(s)	75, 211
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	3 cut(s)	77, 95, 140
CviKI_1	RGCY	3 cut(s)	77, 95, 140
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	1 cut(s)	184
DpnII	GATC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	1 cut(s)	161
FaiI	YATR	7 cut(s)	92, 115, 159, 188, 225, 227, 282
FatI	CATG	1 cut(s)	157
FauI	CCCGC	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	2 cut(s)	29, 182
Fsp4HI	GCNGC	1 cut(s)	138
FspI	TGCGCA	1 cut(s)	53
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	161
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	3 cut(s)	254, 290, 304
Hpy166II	GTNNAC	2 cut(s)	67, 85
Hpy188I	TCNGA	3 cut(s)	166, 250, 311
Hpy8I	GTNNAC	2 cut(s)	67, 85
HpyAV	CCTTC	2 cut(s)	7, 223
HpyCH4III	ACNGT	2 cut(s)	133, 215
HpyCH4V	TGCA	2 cut(s)	117, 137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	1 cut(s)	308
Hsp92II	CATG	1 cut(s)	161
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	182
LpnPI	CCDG	7 cut(s)	7, 40, 88, 115, 251, 259, 279
Lsp1109I	GCAGC	1 cut(s)	149
MalI	GATC	1 cut(s)	184
MboI	GATC	1 cut(s)	182
MflI	RGATCY	1 cut(s)	182
MluCI	AATT	1 cut(s)	244
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	3 cut(s)	134, 160, 244
Mph1103I	ATGCAT	1 cut(s)	119
MroXI	GAANNNNTTC	1 cut(s)	303
MseI	TTAA	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	103
Mva1269I	GAATGC	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	182
NlaIII	CATG	1 cut(s)	161
NlaIV	GGNNCC	1 cut(s)	107
NsbI	TGCGCA	1 cut(s)	53
NsiI	ATGCAT	1 cut(s)	119
PctI	GAATGC	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	290, 304
PfoI	TCCNGGA	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	107
PspPI	GGNCC	2 cut(s)	75, 211
PstNI	CAGNNNCTG	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	182
Sau96I	GGNCC	2 cut(s)	75, 211
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	103
SetI	ASST	4 cut(s)	84, 111, 126, 142
SinI	GGWCC	1 cut(s)	211
Sse9I	AATT	1 cut(s)	244
SsiI	CCGC	1 cut(s)	73
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	133, 215
TaqI	TCGA	2 cut(s)	45, 206
TasI	AATT	1 cut(s)	244
TfiI	GAWTC	2 cut(s)	290, 304
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	3 cut(s)	146, 242, 303
TspGWI	ACGGA	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	303
Zsp2I	ATGCAT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.