MD12G1051600.v1.1

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000947
Physical Location & Seq
Reverse (-)
5854112 .. 5855991
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1051600.v1.1.491

Sequence Viewer

Length: 1260 bp
ATGGTTTCCTCTCCGGCTCCGGCAGAGGCTGCCGTTGACCTGAATCTGAGTGTTAATCTTAACGATTCAGATTCAAATTCAGTTTCAGATTCAGGAGTTACGAGGAGGAGCAATTTATTATCATTATTATTATGTTGGTGCGAGGATTCGTTGTTTGATGTTTTGTGTAGATTATCACAAAGGGATTTGGTTAAGTGCAAGATGGTGTCCAAGTCCTGGCAATGGCACCGAATAATCTCCCGTGTGTGGCTGCGGATGTTTTGGCCGCGGTCTCCTACCGTGGGTCTTTTCTACCGTACGATCCACTCTTGCGGTATGTATCAGTTACTCTCCCTGGTCTATTTATATGATTATCCCTTCTTCAAGTCCCCCGAATCGTCGTCACCGCTTGTGGATTTGGGCGGTGAACTGTGTCGGTGGCAGAGACGTGACTTCTCTGACAATCTCAGGGACTCTTGTAATGGGTTACTTCTGTTGTTCAACCCAACAACTTACCAGTTTTGTGTGAGCAACCCCATCACTAAGCAACACGCCTCCATCCCTCTTCCTGTAGTCGAAGCCGAGGAGGCCGATTTCTGTGCTGCCTTGGCTTATGACCCTGTCGAGTCAGATCACTACAGAGTTGTTCGAATTGATTATTTCCATTCCCAGCAACAACCAACCTCCATAACCACAACCACCCCAATGGACATTTTCTCGTCGCATTCTAGACACTGGGTTCGACATGGGTTGCGACTTGACCCCAATTTTGTTGAGGGCTTCAAAAGGTTCAAACTTTGCAGGAAATTTTTCTACTTGCGTGGGGTGTTATACAGCTTAGCTACCTCAGGGAAACTTTTGTGTATTGATCTCAATACTGTTGAAGCTCGTGCCTTTCAACTCCCTCCTTGTCCTGTCCATGAGGAGAAGGACCATGACGATGATGATAAAACAATGATGGGATGTCTTGGGGTGTCAATGGACCTTGTCTGTTATGTAAACCGTGATGCTTCAGATAATTTTTATTTTTGGTCTTATGATGATCGACCAGGATGTGAATCTGGTGATAGATGGACTCTCAGATATAGTGTGGGTGGCATGACGTTAAGAATGAAAGTGCTTTTCGCTTCGGATGTCAAGTACAATCAACACCATGATACTCTGGTACCCTTTACAATAAGTCCAAATTCTCATGTGCTGTTCTTTGGCACTCGAAGGCTGATCTTTCGCTATGACTTAGAAAGCAGAAGAAAGCTGAAACTGCTTCATATGCCAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

420

Amino Acids

48.47

Weight (kDa)

7.18

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 148 - 216 3e-06 F-box associated beta propeller domain
FBA_1 PF07734 152 - 303 1.3e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1144
AccB1I GGYRCC 2 cut(s) 225, 1144
AccB7I CCANNNNNTGG 1 cut(s) 216
AccII CGCG 1 cut(s) 268
AciI CCGC 6 cut(s) 253, 266, 268, 312, 386, 402
AclWI GGATC 1 cut(s) 295
AcoI YGGCCR 1 cut(s) 263
AcsI RAATTY 3 cut(s) 76, 785, 1165
AcuI CTGAAG 1 cut(s) 975
AfaI GTAC 3 cut(s) 298, 1121, 1146
AfiI CCNNNNNNNGG 4 cut(s) 216, 222, 246, 281
AgsI TTSAA 7 cut(s) 75, 364, 481, 763, 772, 863, 878
AjiI CACGTC 1 cut(s) 428
AjnI CCWGG 3 cut(s) 215, 333, 1027
AluBI AGCT 4 cut(s) 816, 821, 866, 1234
AluI AGCT 4 cut(s) 816, 821, 866, 1234
Alw26I GTCTC 2 cut(s) 276, 418
AlwI GGATC 1 cut(s) 295
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 2 cut(s) 263, 567
ApeKI GCWGC 3 cut(s) 29, 250, 581
ApoI RAATTY 3 cut(s) 76, 785, 1165
ArsI GACNNNNNNTTYG 4 cut(s) 702, 731, 734, 763
Asp700I GAANNNNTTC 1 cut(s) 788
Asp718I GGTACC 1 cut(s) 1144
AspS9I GGNCC 2 cut(s) 910, 961
AsuHPI GGTGA 3 cut(s) 375, 416, 1055
AsuII TTCGAA 1 cut(s) 628
AvaII GGWCC 2 cut(s) 910, 961
AxyI CCTNAGG 1 cut(s) 826
BaeI ACNNNNGTAYC 4 cut(s) 1128, 1128, 1161, 1161
BanI GGYRCC 2 cut(s) 225, 1144
BauI CACGAG 1 cut(s) 867
BbvI GCAGC 3 cut(s) 16, 237, 568
BccI CCATC 5 cut(s) 196, 524, 545, 931, 1044
BceAI ACGGC 1 cut(s) 17
BcgI CGANNNNNNTGC 2 cut(s) 560, 594
BciT130I CCWGG 3 cut(s) 217, 335, 1029
BcoDI GTCTC 2 cut(s) 276, 418
BfaI CTAG 1 cut(s) 708
BfmI CTRYAG 2 cut(s) 549, 616
BglI GCCNNNNNGGC 1 cut(s) 566
BisI GCNGC 4 cut(s) 30, 251, 266, 582
BlpI GCTNAGC 1 cut(s) 817
BlsI GCNGC 4 cut(s) 31, 252, 267, 583
Bme1390I CCNGG 3 cut(s) 217, 335, 1029
Bme18I GGWCC 2 cut(s) 910, 961
BmgBI CACGTC 1 cut(s) 428
BmgT120I GGNCC 2 cut(s) 910, 961
BmiI GGNNCC 3 cut(s) 18, 227, 1146
BmrFI CCNGG 3 cut(s) 217, 335, 1029
BmrI ACTGGG 1 cut(s) 724
BmsI GCATC 1 cut(s) 976
BmuI ACTGGG 1 cut(s) 724
Bpu1102I GCTNAGC 1 cut(s) 817
Bpu14I TTCGAA 1 cut(s) 628
BsaBI GATNNNNATC 1 cut(s) 1036
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 5 cut(s) 266, 279, 333, 561, 585
Bsc4I CCNNNNNNNGG 4 cut(s) 216, 222, 246, 281
Bse1I ACTGG 3 cut(s) 496, 719, 1253
Bse21I CCTNAGG 1 cut(s) 826
Bse3DI GCAATG 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 1036
BseBI CCWGG 3 cut(s) 217, 335, 1029
BseDI CCNNGG 5 cut(s) 266, 279, 333, 561, 585
BseGI GGATG 5 cut(s) 261, 537, 947, 1037, 1117
BseJI GATNNNNATC 1 cut(s) 1036
BseLI CCNNNNNNNGG 4 cut(s) 216, 222, 246, 281
BseMI GCAATG 1 cut(s) 227
BseMII CTCAG 4 cut(s) 38, 460, 840, 1072
BseNI ACTGG 3 cut(s) 496, 719, 1253
BseRI GAGGAG 4 cut(s) 118, 121, 578, 917
BseXI GCAGC 3 cut(s) 16, 237, 568
BseYI CCCAGC 1 cut(s) 648
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 2 cut(s) 265, 569
BshNI GGYRCC 2 cut(s) 225, 1144
BsiSI CCGG 2 cut(s) 14, 20
BsiWI CGTACG 1 cut(s) 296
BslFI GGGAC 2 cut(s) 352, 464
BslI CCNNNNNNNGG 4 cut(s) 216, 222, 246, 281
BsmAI GTCTC 2 cut(s) 276, 418
BsmBI CGTCTC 1 cut(s) 418
BsmFI GGGAC 2 cut(s) 352, 464
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 2 cut(s) 265, 569
Bso31I GGTCTC 1 cut(s) 276
Bsp119I TTCGAA 1 cut(s) 628
Bsp143I GATC 5 cut(s) 300, 610, 847, 1021, 1200
Bsp1720I GCTNAGC 1 cut(s) 817
BspACI CCGC 6 cut(s) 253, 266, 268, 312, 386, 402
BspANI GGCC 2 cut(s) 265, 569
BspCNI CTCAG 4 cut(s) 39, 459, 839, 1071
BspFNI CGCG 1 cut(s) 268
BspLI GGNNCC 3 cut(s) 18, 227, 1146
BspPI GGATC 1 cut(s) 295
BspT104I TTCGAA 1 cut(s) 628
BspT107I GGYRCC 2 cut(s) 225, 1144
BspTNI GGTCTC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 227
BsrI ACTGG 3 cut(s) 496, 719, 1253
BssECI CCNNGG 5 cut(s) 266, 279, 333, 561, 585
BssMI GATC 5 cut(s) 300, 610, 847, 1021, 1200
BssSI CACGAG 1 cut(s) 867
BssT1I CCWWGG 1 cut(s) 585
Bst2BI CACGAG 1 cut(s) 867
Bst2UI CCWGG 3 cut(s) 217, 335, 1029
Bst4CI ACNGT 5 cut(s) 280, 296, 411, 859, 983
Bst6I CTCTTC 1 cut(s) 549
BstAPI GCANNNNNTGC 1 cut(s) 29
BstBI TTCGAA 1 cut(s) 628
BstDEI CTNAG 7 cut(s) 47, 446, 522, 817, 826, 1058, 1216
BstDSI CCRYGG 2 cut(s) 266, 279
BstF5I GGATG 5 cut(s) 261, 537, 947, 1037, 1117
BstFNI CGCG 1 cut(s) 268
BstKTI GATC 5 cut(s) 303, 613, 850, 1024, 1203
BstMAI GTCTC 2 cut(s) 276, 418
BstMBI GATC 5 cut(s) 300, 610, 847, 1021, 1200
BstMWI GCNNNNNNNGC 5 cut(s) 29, 566, 587, 1240, 1249
BstNI CCWGG 3 cut(s) 217, 335, 1029
BstSCI CCNGG 3 cut(s) 215, 333, 1027
BstSFI CTRYAG 2 cut(s) 549, 616
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 3 cut(s) 16, 237, 568
BstXI CCANNNNNNTGG 1 cut(s) 685
Bsu36I CCTNAGG 1 cut(s) 826
BsuRI GGCC 2 cut(s) 265, 569
BtgI CCRYGG 2 cut(s) 266, 279
BtrI CACGTC 1 cut(s) 428
BtsCI GGATG 5 cut(s) 261, 537, 947, 1037, 1117
BtsIMutI CAGTG 2 cut(s) 712, 1260
CaiI CAGNNNCTG 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 910, 961
Cfr42I CCGCGG 1 cut(s) 269
Csp6I GTAC 3 cut(s) 297, 1120, 1145
CviAII CATG 6 cut(s) 725, 899, 914, 1078, 1133, 1172
CviQI GTAC 3 cut(s) 297, 1120, 1145
DdeI CTNAG 7 cut(s) 47, 446, 522, 817, 826, 1058, 1216
DpnI GATC 5 cut(s) 302, 612, 849, 1023, 1202
DpnII GATC 5 cut(s) 300, 610, 847, 1021, 1200
EaeI YGGCCR 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
Eco130I CCWWGG 1 cut(s) 585
Eco31I GGTCTC 1 cut(s) 276
Eco47I GGWCC 2 cut(s) 910, 961
Eco57I CTGAAG 1 cut(s) 975
Eco81I CCTNAGG 1 cut(s) 826
EcoRII CCWGG 3 cut(s) 215, 333, 1027
EcoT14I CCWWGG 1 cut(s) 585
ErhI CCWWGG 1 cut(s) 585
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 6 cut(s) 728, 902, 917, 1081, 1136, 1175
FaqI GGGAC 2 cut(s) 352, 464
FatI CATG 6 cut(s) 724, 898, 913, 1077, 1132, 1171
FauNDI CATATG 1 cut(s) 1248
Fnu4HI GCNGC 4 cut(s) 30, 251, 266, 582
FokI GGATG 5 cut(s) 268, 524, 954, 1044, 1124
Fsp4HI GCNGC 4 cut(s) 30, 251, 266, 582
FspBI CTAG 1 cut(s) 708
GluI GCNGC 4 cut(s) 30, 251, 266, 582
GsaI CCCAGC 1 cut(s) 652
HaeIII GGCC 2 cut(s) 265, 569
HapII CCGG 2 cut(s) 14, 20
Hin1II CATG 6 cut(s) 728, 902, 917, 1081, 1136, 1175
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HpaII CCGG 2 cut(s) 14, 20
HphI GGTGA 3 cut(s) 375, 416, 1055
Hpy166II GTNNAC 3 cut(s) 37, 407, 979
Hpy188I TCNGA 8 cut(s) 48, 70, 88, 439, 610, 994, 1061, 1111
Hpy188III TCNNGA 2 cut(s) 93, 708
Hpy8I GTNNAC 3 cut(s) 37, 407, 979
Hpy99I CGWCG 2 cut(s) 382, 703
HpyAV CCTTC 3 cut(s) 367, 901, 1188
HpyCH4III ACNGT 5 cut(s) 280, 296, 411, 859, 983
HpyCH4IV ACGT 2 cut(s) 427, 1082
HpyCH4V TGCA 2 cut(s) 198, 780
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 566, 587, 1240, 1249
HpyF3I CTNAG 7 cut(s) 47, 446, 522, 817, 826, 1058, 1216
HpySE526I ACGT 2 cut(s) 427, 1082
Hsp92II CATG 6 cut(s) 728, 902, 917, 1081, 1136, 1175
KpnI GGTACC 1 cut(s) 1148
KspI CCGCGG 1 cut(s) 269
Kzo9I GATC 5 cut(s) 300, 610, 847, 1021, 1200
LmnI GCTCC 2 cut(s) 22, 108
Lsp1109I GCAGC 3 cut(s) 16, 237, 568
LweI GCATC 1 cut(s) 976
MaeI CTAG 1 cut(s) 708
MaeII ACGT 2 cut(s) 427, 1082
MaeIII GTNAC 5 cut(s) 97, 324, 381, 428, 465
MalI GATC 5 cut(s) 302, 612, 849, 1023, 1202
MboI GATC 5 cut(s) 300, 610, 847, 1021, 1200
MboII GAAGA 3 cut(s) 352, 536, 1239
MluCI AATT 7 cut(s) 76, 112, 630, 745, 785, 997, 1165
MlyI GAGTC 3 cut(s) 446, 614, 1048
MroXI GAANNNNTTC 1 cut(s) 788
MseI TTAA 4 cut(s) 54, 60, 192, 1085
MslI CAYNNNNRTG 2 cut(s) 683, 918
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 2 cut(s) 14, 20
MspR9I CCNGG 3 cut(s) 217, 335, 1029
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 3 cut(s) 217, 335, 1029
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 5 cut(s) 29, 566, 587, 1240, 1249
NdeI CATATG 1 cut(s) 1248
NdeII GATC 5 cut(s) 300, 610, 847, 1021, 1200
NlaIII CATG 6 cut(s) 728, 902, 917, 1081, 1136, 1175
NlaIV GGNNCC 3 cut(s) 18, 227, 1146
NmeAIII GCCGAG 1 cut(s) 586
NmuCI GTSAC 2 cut(s) 381, 428
NspV TTCGAA 1 cut(s) 628
PctI GAATGC 1 cut(s) 703
PdmI GAANNNNTTC 1 cut(s) 788
PfeI GAWTC 7 cut(s) 43, 65, 71, 89, 146, 374, 1037
Pfl23II CGTACG 1 cut(s) 296
PflFI GACNNNGTC 2 cut(s) 599, 965
PflMI CCANNNNNTGG 1 cut(s) 216
PkrI GCNGC 4 cut(s) 31, 252, 267, 583
PleI GAGTC 3 cut(s) 446, 613, 1048
PpsI GAGTC 3 cut(s) 446, 613, 1048
Psp6I CCWGG 3 cut(s) 215, 333, 1027
PspFI CCCAGC 1 cut(s) 648
PspGI CCWGG 3 cut(s) 215, 333, 1027
PspLI CGTACG 1 cut(s) 296
PspN4I GGNNCC 3 cut(s) 18, 227, 1146
PspPI GGNCC 2 cut(s) 910, 961
PstNI CAGNNNCTG 1 cut(s) 29
PsyI GACNNNGTC 2 cut(s) 599, 965
RsaI GTAC 3 cut(s) 298, 1121, 1146
RsaNI GTAC 3 cut(s) 297, 1120, 1145
RseI CAYNNNNRTG 2 cut(s) 683, 918
SacII CCGCGG 1 cut(s) 269
SaqAI TTAA 4 cut(s) 54, 60, 192, 1085
SatI GCNGC 4 cut(s) 30, 251, 266, 582
Sau3AI GATC 5 cut(s) 300, 610, 847, 1021, 1200
Sau96I GGNCC 2 cut(s) 910, 961
SchI GAGTC 3 cut(s) 446, 614, 1048
ScrFI CCNGG 3 cut(s) 217, 335, 1029
SfaNI GCATC 1 cut(s) 976
SfcI CTRYAG 2 cut(s) 549, 616
Sfr303I CCGCGG 1 cut(s) 269
SfuI TTCGAA 1 cut(s) 628
SgrBI CCGCGG 1 cut(s) 269
SinI GGWCC 2 cut(s) 910, 961
SmiMI CAYNNNNRTG 2 cut(s) 683, 918
Sse9I AATT 7 cut(s) 76, 112, 630, 745, 785, 997, 1165
SsiI CCGC 6 cut(s) 253, 266, 268, 312, 386, 402
SspMI CTAG 1 cut(s) 708
StyD4I CCNGG 3 cut(s) 215, 333, 1027
StyI CCWWGG 1 cut(s) 585
TaaI ACNGT 5 cut(s) 280, 296, 411, 859, 983
TaiI ACGT 2 cut(s) 430, 1085
TaqI TCGA 6 cut(s) 555, 603, 628, 721, 1024, 1192
TasI AATT 7 cut(s) 76, 112, 630, 745, 785, 997, 1165
TatI WGTACW 1 cut(s) 1119
TauI GCSGC 1 cut(s) 268
TfiI GAWTC 7 cut(s) 43, 65, 71, 89, 146, 374, 1037
Tru1I TTAA 4 cut(s) 54, 60, 192, 1085
Tru9I TTAA 4 cut(s) 54, 60, 192, 1085
TscAI CASTG 2 cut(s) 719, 1260
TseFI GTSAC 2 cut(s) 381, 428
TseI GCWGC 3 cut(s) 29, 250, 581
Tsp45I GTSAC 2 cut(s) 381, 428
TspDTI ATGAA 2 cut(s) 1106, 1235
TspRI CASTG 2 cut(s) 719, 1260
Tth111I GACNNNGTC 2 cut(s) 599, 965
Van91I CCANNNNNTGG 1 cut(s) 216
VpaK11BI GGWCC 2 cut(s) 910, 961
XapI RAATTY 3 cut(s) 76, 785, 1165
XbaI TCTAGA 1 cut(s) 707
XmnI GAANNNNTTC 1 cut(s) 788
XspI CTAG 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.