RLG00000017175

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000947
Physical Location & Seq
Forward (+)
13751880 .. 13753139
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017175

Sequence Viewer

Length: 1260 bp
ATGGGTATGGGGGATTTATGCGAGGATTTGTGGGTTGAGATTTTGGGTAGACTTTCATCGGAGAAGGACTTGGTGCCATGCATGAGCGTGTCCAAGTTATGGCACCGAATAACATCTGGTATTTGGGTGCAGAGATTTTGGGCGCAGTCCCCTCCTTTGGGTCTTTTCTTCCGTACCGCCACCACCAGCACCACCACCGTAGACAAGGTATTGCATCGTATGAATTATATCTCTTTATATAATTATCATGCCATGGAAGATAACCTGGAAAGCACTCTTATTTGCGGAGCTCAATTTTATGACAGAGAATCGTATAGGTCCAAAAAGTCTCATTGGCAGTATTTTGATCGACAATGGTATAAGCCGGGTGCCACTGCTGAATCCACTGATCGTGATGAATACCTAAATGGTTGCAATGGTTTAGTTTTGTTAATGAAATCAGCAACTTATCAGTTTTATGTTTGCAATCCCATCACAAGACAACAAGTTGCCATACCTAAAGCCTGTGTCCACCAAAACCATGATGATCAGCATTTTTGTGCTGCTTTGGCTTTTGACCCTTCCGAATCTACTCATCACTTCAGAGTCGTTAGAATTGATTATTCTGCATCCTACTCAGCTGTGCTGGATATATTCTCGTCTGAATATGGACTGTGGGTTAGACATTGGCTGCAAATTGACCCAGGTTTTACTGAGGGATTCAAAAGCTCCAAGTTGTGCAGGCATTTTGTTTACTTGCGGGGCACGCTATACAGCATAGCCCTATCCTGGAACCTTTTATGCATTGACCTCAATACTGTTGCAGCATCTGTCCTTGAACTTCCTGTTCCAGAGAATGAAAAGACCGGAGCCATGGGATGTCTTGGGGTGTCGATGAATAGTCTCTGCTATATGAAGCGAATGCTCGATAATTCGAAGGACTTTCACAATCTGGCAGTTTGGTATAATGATGATGAATCTGGGGAATGGATTCTCAGATATAGTGTTTCTTGTCGCATATTGGGATACGGATTCCAGTATTTAGGTTATGACTACGATGATTCCATGGAACCCTGTGCAATAAGTCCAACTTCAGATCTCTTGTTCTTTGGCAATCTCAACTTGATTTGTTGTATCCACCTTAAAAGCGAAAAGATGAAATTCGTTTGCAAAACCATCTCTAAAATAGATCCACCTGCTTCTTTCTTGACATTACGTGCATGCTTCGTACCTTTCTACACTCAGTCGAACAAGAGGAATGACGTCTCCACTCCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

420

Amino Acids

48.15

Weight (kDa)

6.23

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 130 - 336 1.7e-14 F-box protein At3g26010-like, beta-propeller
Beta-prop_KIB1-4 PF03478 130 - 281 9.8e-08 KIB1-4 beta-propeller
FBA_1 PF07734 137 - 314 3.4e-09 F-box associated beta propeller domain
Beta-prop_AT5G49610-like PF23635 138 - 385 8.6e-07 F-box protein AT5G49610-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1183
AatII GACGTC 1 cut(s) 1245
Acc36I ACCTGC 1 cut(s) 1183
AccB1I GGYRCC 3 cut(s) 73, 102, 368
AccB7I CCANNNNNTGG 1 cut(s) 99
AccI GTMKAC 2 cut(s) 49, 201
AciI CCGC 3 cut(s) 177, 285, 739
AclWI GGATC 1 cut(s) 1163
AcsI RAATTY 1 cut(s) 1139
AcuI CTGAAG 2 cut(s) 565, 1056
AcyI GRCGYC 1 cut(s) 1242
AfaI GTAC 2 cut(s) 175, 1209
AfiI CCNNNNNNNGG 4 cut(s) 99, 157, 158, 768
AgsI TTSAA 2 cut(s) 703, 818
AjnI CCWGG 3 cut(s) 264, 682, 767
AluBI AGCT 3 cut(s) 290, 620, 708
AluI AGCT 3 cut(s) 290, 620, 708
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 3 cut(s) 333, 887, 1249
AlwI GGATC 1 cut(s) 1163
AlwNI CAGNNNCTG 1 cut(s) 809
ApeKI GCWGC 3 cut(s) 542, 670, 803
ApoI RAATTY 1 cut(s) 1139
Asp700I GAANNNNTTC 1 cut(s) 969
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 318
AsuC2I CCSGG 1 cut(s) 366
AsuII TTCGAA 1 cut(s) 914
AvaII GGWCC 1 cut(s) 318
BaeGI GKGCMC 1 cut(s) 746
BanI GGYRCC 3 cut(s) 73, 102, 368
BanII GRGCYC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 3 cut(s) 529, 657, 815
BccI CCATC 2 cut(s) 479, 1163
BciT130I CCWGG 3 cut(s) 266, 684, 769
BciVI GTATCC 2 cut(s) 998, 1124
BclI TGATCA 1 cut(s) 526
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 3 cut(s) 333, 887, 1249
BfuAI ACCTGC 1 cut(s) 1183
BfuI GTATCC 2 cut(s) 998, 1124
BglII AGATCT 1 cut(s) 1075
BisI GCNGC 3 cut(s) 543, 671, 804
BlsI GCNGC 3 cut(s) 544, 672, 805
Bme1390I CCNGG 4 cut(s) 266, 366, 684, 769
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 6 cut(s) 75, 104, 370, 773, 850, 1050
BmrFI CCNGG 4 cut(s) 266, 366, 684, 769
BmsI GCATC 3 cut(s) 223, 617, 815
Bpu14I TTCGAA 1 cut(s) 914
BpuMI CCSGG 1 cut(s) 366
BsaAI YACGTR 1 cut(s) 1196
BsaHI GRCGYC 1 cut(s) 1242
BsaJI CCNNGG 4 cut(s) 252, 682, 852, 1044
BsaWI WCCGGW 1 cut(s) 845
Bsc4I CCNNNNNNNGG 4 cut(s) 99, 157, 158, 768
Bse1I ACTGG 1 cut(s) 1015
Bse3DI GCAATG 1 cut(s) 421
BseBI CCWGG 3 cut(s) 266, 684, 769
BseDI CCNNGG 4 cut(s) 252, 682, 852, 1044
BseGI GGATG 2 cut(s) 608, 863
BseLI CCNNNNNNNGG 4 cut(s) 99, 157, 158, 768
BseMI GCAATG 1 cut(s) 421
BseMII CTCAG 4 cut(s) 630, 684, 988, 1235
BseNI ACTGG 1 cut(s) 1015
BseSI GKGCMC 1 cut(s) 746
BseXI GCAGC 3 cut(s) 529, 657, 815
BsgI GTGCAG 2 cut(s) 149, 739
BshNI GGYRCC 3 cut(s) 73, 102, 368
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 2 cut(s) 365, 846
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 4 cut(s) 99, 157, 158, 768
BsmAI GTCTC 3 cut(s) 333, 887, 1249
BsmBI CGTCTC 1 cut(s) 1249
BsmFI GGGAC 1 cut(s) 133
BsmI GAATGC 1 cut(s) 906
Bsp119I TTCGAA 1 cut(s) 914
Bsp1286I GDGCHC 2 cut(s) 292, 746
Bsp143I GATC 5 cut(s) 346, 388, 526, 1075, 1168
Bsp19I CCATGG 3 cut(s) 252, 852, 1044
BspACI CCGC 3 cut(s) 177, 285, 739
BspCNI CTCAG 4 cut(s) 629, 685, 987, 1234
BspLI GGNNCC 6 cut(s) 75, 104, 370, 773, 850, 1050
BspMI ACCTGC 1 cut(s) 1183
BspPI GGATC 1 cut(s) 1163
BspT104I TTCGAA 1 cut(s) 914
BspT107I GGYRCC 3 cut(s) 73, 102, 368
BsrDI GCAATG 1 cut(s) 421
BsrI ACTGG 1 cut(s) 1015
BssECI CCNNGG 4 cut(s) 252, 682, 852, 1044
BssMI GATC 5 cut(s) 346, 388, 526, 1075, 1168
BssNI GRCGYC 1 cut(s) 1242
BssT1I CCWWGG 3 cut(s) 252, 852, 1044
Bst2UI CCWGG 3 cut(s) 266, 684, 769
Bst4CI ACNGT 3 cut(s) 199, 654, 799
BstACI GRCGYC 1 cut(s) 1242
BstBAI YACGTR 1 cut(s) 1196
BstBI TTCGAA 1 cut(s) 914
BstC8I GCNNGC 3 cut(s) 722, 746, 1201
BstDEI CTNAG 4 cut(s) 616, 693, 974, 1221
BstDSI CCRYGG 3 cut(s) 252, 852, 1044
BstF5I GGATG 2 cut(s) 608, 863
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 5 cut(s) 349, 391, 529, 1078, 1171
BstMAI GTCTC 3 cut(s) 333, 887, 1249
BstMBI GATC 5 cut(s) 346, 388, 526, 1075, 1168
BstMWI GCNNNNNNNGC 2 cut(s) 548, 745
BstNI CCWGG 3 cut(s) 266, 684, 769
BstNSI RCATGY 1 cut(s) 1203
BstSCI CCNGG 4 cut(s) 264, 364, 682, 767
BstSLI GKGCMC 1 cut(s) 746
BstV1I GCAGC 3 cut(s) 529, 657, 815
BstX2I RGATCY 2 cut(s) 1075, 1168
BstYI RGATCY 2 cut(s) 1075, 1168
BsuI GTATCC 2 cut(s) 998, 1124
BtgI CCRYGG 3 cut(s) 252, 852, 1044
BtsCI GGATG 2 cut(s) 608, 863
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 2 cut(s) 372, 384
BveI ACCTGC 1 cut(s) 1183
Cac8I GCNNGC 3 cut(s) 722, 746, 1201
CaiI CAGNNNCTG 1 cut(s) 809
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 318
Csp6I GTAC 2 cut(s) 174, 1208
CviAII CATG 8 cut(s) 78, 82, 248, 253, 521, 853, 1045, 1200
CviJI RGCY 9 cut(s) 290, 364, 503, 551, 620, 670, 708, 761, 851
CviKI_1 RGCY 9 cut(s) 290, 364, 503, 551, 620, 670, 708, 761, 851
CviQI GTAC 2 cut(s) 174, 1208
DdeI CTNAG 4 cut(s) 616, 693, 974, 1221
DpnI GATC 5 cut(s) 348, 390, 528, 1077, 1170
DpnII GATC 5 cut(s) 346, 388, 526, 1075, 1168
Ecl136II GAGCTC 1 cut(s) 290
Eco130I CCWWGG 3 cut(s) 252, 852, 1044
Eco24I GRGCYC 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 318
Eco53kI GAGCTC 1 cut(s) 290
Eco57I CTGAAG 2 cut(s) 565, 1056
EcoICRI GAGCTC 1 cut(s) 290
EcoRII CCWGG 3 cut(s) 264, 682, 767
EcoT14I CCWWGG 3 cut(s) 252, 852, 1044
EcoT22I ATGCAT 2 cut(s) 83, 785
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 3 cut(s) 252, 852, 1044
Esp3I CGTCTC 1 cut(s) 1249
FaeI CATG 8 cut(s) 81, 85, 251, 256, 524, 856, 1048, 1203
FalI AAGNNNNNCTT 2 cut(s) 1054, 1086
FaqI GGGAC 1 cut(s) 133
FatI CATG 8 cut(s) 77, 81, 247, 252, 520, 852, 1044, 1199
FauI CCCGC 1 cut(s) 732
FbaI TGATCA 1 cut(s) 526
FblI GTMKAC 2 cut(s) 49, 201
Fnu4HI GCNGC 3 cut(s) 543, 671, 804
FokI GGATG 2 cut(s) 595, 870
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 3 cut(s) 543, 671, 804
GlaI GCGC 1 cut(s) 144
GluI GCNGC 3 cut(s) 543, 671, 804
HapII CCGG 2 cut(s) 365, 846
HhaI GCGC 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 1242
Hin1II CATG 8 cut(s) 81, 85, 251, 256, 524, 856, 1048, 1203
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 9 cut(s) 308, 380, 566, 585, 699, 956, 970, 1011, 1040
HpaII CCGG 2 cut(s) 365, 846
Hpy166II GTNNAC 4 cut(s) 50, 202, 511, 733
Hpy188I TCNGA 6 cut(s) 61, 565, 584, 643, 977, 1075
Hpy188III TCNNGA 3 cut(s) 392, 830, 1186
Hpy8I GTNNAC 4 cut(s) 50, 202, 511, 733
HpyAV CCTTC 3 cut(s) 58, 570, 910
HpyCH4III ACNGT 3 cut(s) 199, 654, 799
HpyCH4IV ACGT 2 cut(s) 1195, 1242
HpyF10VI GCNNNNNNNGC 2 cut(s) 548, 745
HpyF3I CTNAG 4 cut(s) 616, 693, 974, 1221
HpySE526I ACGT 2 cut(s) 1195, 1242
Hsp92I GRCGYC 1 cut(s) 1242
Hsp92II CATG 8 cut(s) 81, 85, 251, 256, 524, 856, 1048, 1203
HspAI GCGC 1 cut(s) 143
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 5 cut(s) 346, 388, 526, 1075, 1168
LmnI GCTCC 3 cut(s) 287, 713, 848
Lsp1109I GCAGC 3 cut(s) 529, 657, 815
LweI GCATC 3 cut(s) 223, 617, 815
MaeII ACGT 2 cut(s) 1195, 1242
MalI GATC 5 cut(s) 348, 390, 528, 1077, 1170
MboI GATC 5 cut(s) 346, 388, 526, 1075, 1168
MboII GAAGA 2 cut(s) 160, 269
MflI RGATCY 2 cut(s) 1075, 1168
MhlI GDGCHC 2 cut(s) 292, 746
MluCI AATT 7 cut(s) 223, 241, 293, 594, 675, 910, 1139
MlyI GAGTC 1 cut(s) 594
MmeI TCCRAC 1 cut(s) 1091
MnlI CCTC 5 cut(s) 16, 162, 688, 800, 1227
Mph1103I ATGCAT 2 cut(s) 83, 785
MroXI GAANNNNTTC 1 cut(s) 969
MseI TTAA 2 cut(s) 431, 1122
MslI CAYNNNNRTG 2 cut(s) 86, 537
MspA1I CMGCKG 1 cut(s) 620
MspI CCGG 2 cut(s) 365, 846
MspR9I CCNGG 4 cut(s) 266, 366, 684, 769
Mva1269I GAATGC 1 cut(s) 906
MvaI CCWGG 3 cut(s) 266, 684, 769
MwoI GCNNNNNNNGC 2 cut(s) 548, 745
NciI CCSGG 1 cut(s) 366
NcoI CCATGG 3 cut(s) 252, 852, 1044
NdeII GATC 5 cut(s) 346, 388, 526, 1075, 1168
NlaIII CATG 8 cut(s) 81, 85, 251, 256, 524, 856, 1048, 1203
NlaIV GGNNCC 6 cut(s) 75, 104, 370, 773, 850, 1050
NsiI ATGCAT 2 cut(s) 83, 785
NspI RCATGY 1 cut(s) 1203
NspV TTCGAA 1 cut(s) 914
PaeI GCATGC 1 cut(s) 1203
PaqCI CACCTGC 1 cut(s) 1183
PctI GAATGC 1 cut(s) 906
PdmI GAANNNNTTC 1 cut(s) 969
PfeI GAWTC 8 cut(s) 308, 380, 566, 699, 956, 970, 1011, 1040
PflMI CCANNNNNTGG 1 cut(s) 99
PfoI TCCNGGA 1 cut(s) 767
PkrI GCNGC 3 cut(s) 544, 672, 805
PleI GAGTC 1 cut(s) 593
PpsI GAGTC 1 cut(s) 593
Ppu21I YACGTR 1 cut(s) 1196
Psp124BI GAGCTC 1 cut(s) 292
Psp6I CCWGG 3 cut(s) 264, 682, 767
PspGI CCWGG 3 cut(s) 264, 682, 767
PspN4I GGNNCC 6 cut(s) 75, 104, 370, 773, 850, 1050
PspPI GGNCC 1 cut(s) 318
PstNI CAGNNNCTG 1 cut(s) 809
PsuI RGATCY 2 cut(s) 1075, 1168
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 2 cut(s) 175, 1209
RsaNI GTAC 2 cut(s) 174, 1208
RseI CAYNNNNRTG 2 cut(s) 86, 537
SacI GAGCTC 1 cut(s) 292
SaqAI TTAA 2 cut(s) 431, 1122
SatI GCNGC 3 cut(s) 543, 671, 804
Sau3AI GATC 5 cut(s) 346, 388, 526, 1075, 1168
Sau96I GGNCC 1 cut(s) 318
SchI GAGTC 1 cut(s) 594
ScrFI CCNGG 4 cut(s) 266, 366, 684, 769
SduI GDGCHC 2 cut(s) 292, 746
SfaNI GCATC 3 cut(s) 223, 617, 815
SfuI TTCGAA 1 cut(s) 914
SinI GGWCC 1 cut(s) 318
SmiMI CAYNNNNRTG 2 cut(s) 86, 537
SphI GCATGC 1 cut(s) 1203
Sse9I AATT 7 cut(s) 223, 241, 293, 594, 675, 910, 1139
SsiI CCGC 3 cut(s) 177, 285, 739
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 4 cut(s) 264, 364, 682, 767
StyI CCWWGG 3 cut(s) 252, 852, 1044
TaaI ACNGT 3 cut(s) 199, 654, 799
TaiI ACGT 2 cut(s) 1198, 1245
TaqI TCGA 5 cut(s) 349, 872, 906, 914, 1226
TasI AATT 7 cut(s) 223, 241, 293, 594, 675, 910, 1139
TfiI GAWTC 8 cut(s) 308, 380, 566, 699, 956, 970, 1011, 1040
Tru1I TTAA 2 cut(s) 431, 1122
Tru9I TTAA 2 cut(s) 431, 1122
TscAI CASTG 2 cut(s) 379, 391
TseI GCWGC 3 cut(s) 542, 670, 803
TspDTI ATGAA 9 cut(s) 45, 236, 411, 449, 852, 890, 908, 969, 1151
TspGWI ACGGA 2 cut(s) 161, 1023
TspRI CASTG 2 cut(s) 379, 391
Van91I CCANNNNNTGG 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 318
XapI RAATTY 1 cut(s) 1139
XceI RCATGY 1 cut(s) 1203
XmiI GTMKAC 2 cut(s) 49, 201
XmnI GAANNNNTTC 1 cut(s) 969
ZraI GACGTC 1 cut(s) 1243
Zsp2I ATGCAT 2 cut(s) 83, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.