RLG00000017172

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000947
Physical Location & Seq
Forward (+)
13693346 .. 13695548
2203 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017172

Sequence Viewer

Length: 1218 bp
ATGGAAGATAACCTGGAAAGCACTCGTTCTTGCGGAGGTCAATTTTATAACAAAGAATCGTATAGGTCCAAAAAGTCTCATTGGCAGTATTGTGATCGACAATGGTATAAGCCGGGTGCCACTGCTGAATCCACTGATCGTGATGAGTACCTAAATGGCTGCAATGGTTTAGTTTTGTTAATGAAATCAGCAACTTATCAGTTTTATGTTTGCAATCCCATCACAAGACAACAAGTTGCCATACCTAAAGCCTGTGTCCACCAAAACCATGATGATCAGCATTTTTGTGCTGCTTTGGCTTTTGACCCTTCCGAATCTGCTCATCACTTCAGAGTTGTTAGAATTGATTATTCTGCATCCTACTCAGCTGTGCTGGATATATTCTCGACTGAATATGGACTGTGGGTTCGACATTGGCTGCAAATTGACCCAGGTTTTACTGAGGGATTCAAAAGCTCCACGTTGTGCAGGCATTTTGTTTACTTGCGAGGTAGGCTATACAGCATAGCCCTATCCTGGAACCTTTTATGCATTGACCTCAATACTGTTGCAGCTTCTGCCCTTGAACTTCCTGTTCCAGAGGATGAAAAGACCGGAGCCATGGGATGTCTTGGGGTGTCGATGAATAGTCTCTGCTATATGAAGCGAATGCTCGATAATTCGAAGGACTTTCACAATCTGGCAGTTTGGTATAATGTTGAAGAATCTGGGGAATGGATTCTCAGATATAGTGTTTCTTGTCGCTTATTGGGATACGGATTCCAGTCTCGAGGTTATGACTACGATGATTCCATGGAACCCTGTGCAATAAGTCCAACTTCAGATCTCTTGTTCTATGGTAATCCCAACTTGATTTGTTGTATCCACCTTAAAAGCGAAAAGATGAAATTCGTTTGCAAAACAAGCTCTAAAATAGATCCACCTGCTTCTTTCTTGACATTACGTGCATGCTTTGTACCTTTCTACACTCAGTTGAACAAGAGGAATGACGTCTCCACTCCATTAGCAACCGCTTGTGAGCGCACAGAAATTTTAAGTGTGGAAGTACCATACGGGAAACAAGAAGATGGTGAATCTGTTGAAGTAATAAATGTTAAGTTATATGATAGTTTGCAAAAAAAGCCATCCCCGTCATTGGTTTATCCCAGTGAAATCATGGGAATGCATTTAGAGCTTGAACATATCCCCCAATTTCTACTTGATATAATGGCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

406

Amino Acids

46.21

Weight (kDa)

5.67

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 46 - 201 2.5e-08 KIB1-4 beta-propeller
b-prop_At3g26010-like PF24750 49 - 251 3e-13 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 53 - 230 8.3e-09 F-box associated beta propeller domain
Beta-prop_AT5G49610-like PF23635 54 - 303 4.9e-07 F-box protein AT5G49610-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 48
AarI CACCTGC 1 cut(s) 931
AatII GACGTC 1 cut(s) 993
Acc36I ACCTGC 1 cut(s) 931
AccB1I GGYRCC 1 cut(s) 116
AciI CCGC 2 cut(s) 33, 1011
AclWI GGATC 1 cut(s) 911
AcsI RAATTY 2 cut(s) 887, 1029
AcuI CTGAAG 2 cut(s) 313, 804
AcyI GRCGYC 1 cut(s) 990
AdeI CACNNNGTG 1 cut(s) 465
AfaI GTAC 3 cut(s) 149, 957, 1047
AfiI CCNNNNNNNGG 2 cut(s) 516, 1135
AgsI TTSAA 6 cut(s) 451, 566, 701, 976, 1082, 1178
AjnI CCWGG 3 cut(s) 12, 430, 515
AloI GAACNNNNNNTCC 2 cut(s) 390, 422
AluBI AGCT 5 cut(s) 368, 456, 554, 906, 1174
AluI AGCT 5 cut(s) 368, 456, 554, 906, 1174
Alw26I GTCTC 4 cut(s) 81, 635, 771, 997
AlwI GGATC 1 cut(s) 911
AlwNI CAGNNNCTG 1 cut(s) 557
Ama87I CYCGRG 1 cut(s) 768
ApeKI GCWGC 4 cut(s) 159, 290, 418, 551
ApoI RAATTY 2 cut(s) 887, 1029
ArsI GACNNNNNNTTYG 2 cut(s) 390, 422
Asp700I GAANNNNTTC 1 cut(s) 717
AspLEI GCGC 1 cut(s) 1023
AspS9I GGNCC 1 cut(s) 66
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 1082
AsuII TTCGAA 1 cut(s) 662
AvaI CYCGRG 1 cut(s) 768
AvaII GGWCC 1 cut(s) 66
BanI GGYRCC 1 cut(s) 116
BbvI GCAGC 4 cut(s) 146, 277, 405, 563
BccI CCATC 3 cut(s) 227, 1061, 1132
BciT130I CCWGG 3 cut(s) 14, 432, 517
BciVI GTATCC 2 cut(s) 746, 872
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 4 cut(s) 81, 635, 771, 997
BfuAI ACCTGC 1 cut(s) 931
BfuI GTATCC 2 cut(s) 746, 872
BglII AGATCT 1 cut(s) 823
BisI GCNGC 4 cut(s) 160, 291, 419, 552
BlsI GCNGC 4 cut(s) 161, 292, 420, 553
Bme1390I CCNGG 4 cut(s) 14, 114, 432, 517
Bme18I GGWCC 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 768
BmgT120I GGNCC 1 cut(s) 66
BmiI GGNNCC 4 cut(s) 118, 521, 598, 798
BmrFI CCNGG 4 cut(s) 14, 114, 432, 517
BmrI ACTGGG 1 cut(s) 1140
BmsI GCATC 1 cut(s) 365
BmuI ACTGGG 1 cut(s) 1140
Bpu14I TTCGAA 1 cut(s) 662
BpuMI CCSGG 1 cut(s) 114
BsaAI YACGTR 1 cut(s) 944
BsaHI GRCGYC 1 cut(s) 990
BsaJI CCNNGG 3 cut(s) 430, 600, 792
BsaWI WCCGGW 1 cut(s) 593
Bsc4I CCNNNNNNNGG 2 cut(s) 516, 1135
Bse1I ACTGG 2 cut(s) 763, 1146
Bse3DI GCAATG 2 cut(s) 169, 1218
BseBI CCWGG 3 cut(s) 14, 432, 517
BseDI CCNNGG 3 cut(s) 430, 600, 792
BseGI GGATG 4 cut(s) 356, 589, 611, 1124
BseLI CCNNNNNNNGG 2 cut(s) 516, 1135
BseMI GCAATG 2 cut(s) 169, 1218
BseMII CTCAG 4 cut(s) 378, 432, 736, 983
BseNI ACTGG 2 cut(s) 763, 1146
BseXI GCAGC 4 cut(s) 146, 277, 405, 563
BsgI GTGCAG 1 cut(s) 487
BshNI GGYRCC 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 768
BsiSI CCGG 2 cut(s) 113, 594
BslI CCNNNNNNNGG 2 cut(s) 516, 1135
BsmAI GTCTC 4 cut(s) 81, 635, 771, 997
BsmBI CGTCTC 1 cut(s) 997
BsmI GAATGC 2 cut(s) 654, 1167
BsoBI CYCGRG 1 cut(s) 768
Bsp119I TTCGAA 1 cut(s) 662
Bsp143I GATC 5 cut(s) 94, 136, 274, 823, 916
Bsp19I CCATGG 2 cut(s) 600, 792
BspACI CCGC 2 cut(s) 33, 1011
BspCNI CTCAG 4 cut(s) 377, 433, 735, 982
BspLI GGNNCC 4 cut(s) 118, 521, 598, 798
BspMI ACCTGC 1 cut(s) 931
BspPI GGATC 1 cut(s) 911
BspT104I TTCGAA 1 cut(s) 662
BspT107I GGYRCC 1 cut(s) 116
BsrDI GCAATG 2 cut(s) 169, 1218
BsrI ACTGG 2 cut(s) 763, 1146
BssECI CCNNGG 3 cut(s) 430, 600, 792
BssMI GATC 5 cut(s) 94, 136, 274, 823, 916
BssNI GRCGYC 1 cut(s) 990
BssT1I CCWWGG 2 cut(s) 600, 792
Bst2UI CCWGG 3 cut(s) 14, 432, 517
Bst4CI ACNGT 2 cut(s) 402, 547
BstACI GRCGYC 1 cut(s) 990
BstAPI GCANNNNNTGC 1 cut(s) 557
BstBAI YACGTR 1 cut(s) 944
BstBI TTCGAA 1 cut(s) 662
BstC8I GCNNGC 2 cut(s) 470, 949
BstDEI CTNAG 4 cut(s) 364, 441, 722, 969
BstDSI CCRYGG 2 cut(s) 600, 792
BstF5I GGATG 4 cut(s) 356, 589, 611, 1124
BstHHI GCGC 1 cut(s) 1023
BstKTI GATC 5 cut(s) 97, 139, 277, 826, 919
BstMAI GTCTC 4 cut(s) 81, 635, 771, 997
BstMBI GATC 5 cut(s) 94, 136, 274, 823, 916
BstMWI GCNNNNNNNGC 6 cut(s) 296, 493, 557, 903, 1120, 1171
BstNI CCWGG 3 cut(s) 14, 432, 517
BstNSI RCATGY 1 cut(s) 951
BstSCI CCNGG 4 cut(s) 12, 112, 430, 515
BstV1I GCAGC 4 cut(s) 146, 277, 405, 563
BstX2I RGATCY 2 cut(s) 823, 916
BstYI RGATCY 2 cut(s) 823, 916
BsuI GTATCC 2 cut(s) 746, 872
BtgI CCRYGG 2 cut(s) 600, 792
BtsCI GGATG 4 cut(s) 356, 589, 611, 1124
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 3 cut(s) 120, 132, 1153
BveI ACCTGC 1 cut(s) 931
Cac8I GCNNGC 2 cut(s) 470, 949
CaiI CAGNNNCTG 1 cut(s) 557
CfoI GCGC 1 cut(s) 1023
Cfr13I GGNCC 1 cut(s) 66
Csp6I GTAC 3 cut(s) 148, 956, 1046
CviAII CATG 5 cut(s) 269, 601, 793, 948, 1156
CviQI GTAC 3 cut(s) 148, 956, 1046
DdeI CTNAG 4 cut(s) 364, 441, 722, 969
DpnI GATC 5 cut(s) 96, 138, 276, 825, 918
DpnII GATC 5 cut(s) 94, 136, 274, 823, 916
DraIII CACNNNGTG 1 cut(s) 465
Eco130I CCWWGG 2 cut(s) 600, 792
Eco47I GGWCC 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 313, 804
Eco88I CYCGRG 1 cut(s) 768
EcoRII CCWGG 3 cut(s) 12, 430, 515
EcoT14I CCWWGG 2 cut(s) 600, 792
EcoT22I ATGCAT 2 cut(s) 533, 1167
ErhI CCWWGG 2 cut(s) 600, 792
Esp3I CGTCTC 1 cut(s) 997
FaeI CATG 5 cut(s) 272, 604, 796, 951, 1159
FalI AAGNNNNNCTT 2 cut(s) 802, 834
FatI CATG 5 cut(s) 268, 600, 792, 947, 1155
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 4 cut(s) 160, 291, 419, 552
FokI GGATG 4 cut(s) 343, 596, 618, 1111
Fsp4HI GCNGC 4 cut(s) 160, 291, 419, 552
GlaI GCGC 1 cut(s) 1022
GluI GCNGC 4 cut(s) 160, 291, 419, 552
HapII CCGG 2 cut(s) 113, 594
HhaI GCGC 1 cut(s) 1023
Hin1I GRCGYC 1 cut(s) 990
Hin1II CATG 5 cut(s) 272, 604, 796, 951, 1159
Hin6I GCGC 1 cut(s) 1021
HinP1I GCGC 1 cut(s) 1021
HinfI GANTC 9 cut(s) 56, 128, 314, 447, 704, 718, 759, 788, 1073
HpaII CCGG 2 cut(s) 113, 594
HphI GGTGA 1 cut(s) 1082
Hpy166II GTNNAC 2 cut(s) 259, 481
Hpy188I TCNGA 4 cut(s) 313, 332, 725, 823
Hpy188III TCNNGA 5 cut(s) 140, 385, 578, 768, 934
Hpy8I GTNNAC 2 cut(s) 259, 481
HpyAV CCTTC 2 cut(s) 318, 658
HpyCH4III ACNGT 2 cut(s) 402, 547
HpyCH4IV ACGT 3 cut(s) 461, 943, 990
HpyF10VI GCNNNNNNNGC 6 cut(s) 296, 493, 557, 903, 1120, 1171
HpyF3I CTNAG 4 cut(s) 364, 441, 722, 969
HpySE526I ACGT 3 cut(s) 461, 943, 990
Hsp92I GRCGYC 1 cut(s) 990
Hsp92II CATG 5 cut(s) 272, 604, 796, 951, 1159
HspAI GCGC 1 cut(s) 1021
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 5 cut(s) 94, 136, 274, 823, 916
LmnI GCTCC 2 cut(s) 461, 596
Lsp1109I GCAGC 4 cut(s) 146, 277, 405, 563
LweI GCATC 1 cut(s) 365
MaeII ACGT 3 cut(s) 461, 943, 990
MalI GATC 5 cut(s) 96, 138, 276, 825, 918
MboI GATC 5 cut(s) 94, 136, 274, 823, 916
MboII GAAGA 3 cut(s) 17, 713, 1076
MflI RGATCY 2 cut(s) 823, 916
MluCI AATT 7 cut(s) 41, 342, 423, 658, 887, 1029, 1190
MmeI TCCRAC 1 cut(s) 839
MnlI CCTC 7 cut(s) 29, 436, 482, 548, 574, 764, 975
Mph1103I ATGCAT 2 cut(s) 533, 1167
MroXI GAANNNNTTC 1 cut(s) 717
MseI TTAA 4 cut(s) 179, 870, 1034, 1095
MslI CAYNNNNRTG 2 cut(s) 285, 1160
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 2 cut(s) 113, 594
MspR9I CCNGG 4 cut(s) 14, 114, 432, 517
Mva1269I GAATGC 2 cut(s) 654, 1167
MvaI CCWGG 3 cut(s) 14, 432, 517
MwoI GCNNNNNNNGC 6 cut(s) 296, 493, 557, 903, 1120, 1171
NciI CCSGG 1 cut(s) 114
NcoI CCATGG 2 cut(s) 600, 792
NdeII GATC 5 cut(s) 94, 136, 274, 823, 916
NlaIII CATG 5 cut(s) 272, 604, 796, 951, 1159
NlaIV GGNNCC 4 cut(s) 118, 521, 598, 798
NsiI ATGCAT 2 cut(s) 533, 1167
NspI RCATGY 1 cut(s) 951
NspV TTCGAA 1 cut(s) 662
PaeI GCATGC 1 cut(s) 951
PaeR7I CTCGAG 1 cut(s) 768
PaqCI CACCTGC 1 cut(s) 931
PctI GAATGC 2 cut(s) 654, 1167
PdmI GAANNNNTTC 1 cut(s) 717
PfeI GAWTC 9 cut(s) 56, 128, 314, 447, 704, 718, 759, 788, 1073
PfoI TCCNGGA 1 cut(s) 515
PkrI GCNGC 4 cut(s) 161, 292, 420, 553
Ppu21I YACGTR 1 cut(s) 944
PsiI TTATAA 1 cut(s) 48
Psp6I CCWGG 3 cut(s) 12, 430, 515
PspGI CCWGG 3 cut(s) 12, 430, 515
PspN4I GGNNCC 4 cut(s) 118, 521, 598, 798
PspPI GGNCC 1 cut(s) 66
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 2 cut(s) 823, 916
PvuII CAGCTG 1 cut(s) 368
RsaI GTAC 3 cut(s) 149, 957, 1047
RsaNI GTAC 3 cut(s) 148, 956, 1046
RseI CAYNNNNRTG 2 cut(s) 285, 1160
SaqAI TTAA 4 cut(s) 179, 870, 1034, 1095
SatI GCNGC 4 cut(s) 160, 291, 419, 552
Sau3AI GATC 5 cut(s) 94, 136, 274, 823, 916
Sau96I GGNCC 1 cut(s) 66
ScrFI CCNGG 4 cut(s) 14, 114, 432, 517
SfaNI GCATC 1 cut(s) 365
Sfr274I CTCGAG 1 cut(s) 768
SfuI TTCGAA 1 cut(s) 662
SinI GGWCC 1 cut(s) 66
SlaI CTCGAG 1 cut(s) 768
SmiMI CAYNNNNRTG 2 cut(s) 285, 1160
SmlI CTYRAG 1 cut(s) 768
SmoI CTYRAG 1 cut(s) 768
SphI GCATGC 1 cut(s) 951
Sse9I AATT 7 cut(s) 41, 342, 423, 658, 887, 1029, 1190
SsiI CCGC 2 cut(s) 33, 1011
StyD4I CCNGG 4 cut(s) 12, 112, 430, 515
StyI CCWWGG 2 cut(s) 600, 792
TaaI ACNGT 2 cut(s) 402, 547
TaiI ACGT 3 cut(s) 464, 946, 993
TaqI TCGA 7 cut(s) 97, 386, 409, 620, 654, 662, 769
TasI AATT 7 cut(s) 41, 342, 423, 658, 887, 1029, 1190
TfiI GAWTC 9 cut(s) 56, 128, 314, 447, 704, 718, 759, 788, 1073
Tru1I TTAA 4 cut(s) 179, 870, 1034, 1095
Tru9I TTAA 4 cut(s) 179, 870, 1034, 1095
TscAI CASTG 3 cut(s) 127, 139, 1153
TseI GCWGC 4 cut(s) 159, 290, 418, 551
TspDTI ATGAA 5 cut(s) 197, 600, 638, 656, 899
TspGWI ACGGA 1 cut(s) 771
TspRI CASTG 3 cut(s) 127, 139, 1153
VpaK11BI GGWCC 1 cut(s) 66
XapI RAATTY 2 cut(s) 887, 1029
XceI RCATGY 1 cut(s) 951
XcmI CCANNNNNNNNNTGG 1 cut(s) 1153
XhoI CTCGAG 1 cut(s) 768
XmnI GAANNNNTTC 1 cut(s) 717
ZraI GACGTC 1 cut(s) 991
Zsp2I ATGCAT 2 cut(s) 533, 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.