Rmu_sc0003804.1_g000032

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003804.1
OG0000947
Physical Location & Seq
Reverse (-)
120950 .. 128318
7369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003804.1_g000032.1.cds

Sequence Viewer

Length: 1341 bp
atgtacacatacgttggaatcccaaactcctcggcaatgggcaaagaatcgatgctgaataggtccacgatgagcatggtcatacttgtcgccatttctgcgaggcgtgtaacgacgacagcatcggggtcgacaaggccagaaacatccggtgatgggagctcgatgatgtccagactacgtaggaaggcagatgcgtcgaggagttcagattcggccttggaagtgtgcaatgggacgacgaagattgtgacagtgaagttttggtgggtgacgagtcgttccctagctcaaggccagggacgagatggcccatacctgggctgcagagtaatgctgcatgctagttatttagcatatctttcatgttcacggaaacttggtgtgcatattgacctgaatattggtgatgttggactccctgtccaggaccaggaggatgaaaggactggtgagatgggatgtcttgggttctatgtgtgcaaccccatcaccacacaacaagtccccgtacctaaagcctcggtccaccaaaaccatgagcattttggtgctgccttggcttttgacccttcggaatctcctcatcactatagagttgtgaggattgattactctgaatccgtttcatcaaactcaaactcagccctgcttgatatcttttggtctgaatacggacagtgggttagacataggttgcagcttgacccaggttttactgaggggtttgagaaggtgaagttgtgcaggcaatttgtttacatgcggggcaagttatacagcatagccatgtcatggaagcttttaggcattgacctcaaaactattgaagcttcgacccttgaacttcctcttcatgatgccgataagaccggagcaatgggatgtctcgccctaacagcagccacagcccctgctgtccctgcaacacacctgccagcccagccctatcgcagcctccagcacctgccgcagcttccctgcagacccctgccgcaagtatttgcagtcctagccacgcgccagccagcctacggcgtcactgccctgctccccgcacgcgcccctgcgctcgctgcacactgcagcccttcgcccagcgtcccccacaagcctcgtcgctgcctgctactgccagcgtgctactgctgctgcaccagtccgcgcaccagcccacacacacctgtgctacgcggccctgcgtccttgcctcccttgcgcgtgctgctgcccggccagcctacccagctcgcttcctctcgcccatcagccctgcaccaaactgtctcgctgctgccctgtaagccttcgccggagctccctgcagcccagcgtggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

446

Amino Acids

48.45

Weight (kDa)

9.2

Isoelectric Point (pI)

60.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 942, 975
Acc36I ACCTGC 2 cut(s) 942, 975
AccB7I CCANNNNNTGG 1 cut(s) 795
AccI GTMKAC 1 cut(s) 131
AccII CGCG 5 cut(s) 1021, 1062, 1165, 1194, 1221
AciI CCGC 6 cut(s) 766, 971, 995, 1056, 1163, 1194
AcoI YGGCCR 1 cut(s) 1234
AcyI GRCGYC 1 cut(s) 1038
AfaI GTAC 2 cut(s) 5, 513
AfiI CCNNNNNNNGG 7 cut(s) 156, 319, 320, 427, 433, 795, 1034
AgsI TTSAA 2 cut(s) 830, 845
AhdI GACNNNNNGTC 1 cut(s) 422
AjnI CCWGG 5 cut(s) 297, 318, 426, 432, 709
AleI CACNNNNGTG 1 cut(s) 1184
AluBI AGCT 8 cut(s) 162, 290, 703, 802, 833, 976, 1249, 1318
AluI AGCT 8 cut(s) 162, 290, 703, 802, 833, 976, 1249, 1318
Alw21I GWGCWC 2 cut(s) 164, 1320
Alw26I GTCTC 2 cut(s) 893, 1291
AlwNI CAGNNNCTG 2 cut(s) 914, 967
AoxI GGCC 6 cut(s) 137, 216, 295, 310, 1195, 1234
AspLEI GCGC 5 cut(s) 1023, 1064, 1072, 1167, 1221
AspS9I GGNCC 5 cut(s) 63, 311, 430, 526, 1196
AsuC2I CCSGG 1 cut(s) 1233
AsuHPI GGTGA 6 cut(s) 164, 283, 419, 464, 484, 748
AvaII GGWCC 3 cut(s) 63, 430, 526
BanII GRGCYC 2 cut(s) 164, 1320
Bbv12I GWGCWC 2 cut(s) 164, 1320
BccI CCATC 5 cut(s) 149, 302, 451, 497, 1273
BceAI ACGGC 1 cut(s) 1051
BcgI CGANNNNNNTGC 4 cut(s) 111, 145, 180, 214
BciT130I CCWGG 5 cut(s) 299, 320, 428, 434, 711
BcnI CCSGG 1 cut(s) 1233
BcoDI GTCTC 2 cut(s) 893, 1291
BfaI CTAG 4 cut(s) 287, 345, 1013, 1339
BfmI CTRYAG 5 cut(s) 325, 592, 982, 1084, 1323
BfuAI ACCTGC 2 cut(s) 942, 975
Bme1390I CCNGG 6 cut(s) 299, 320, 428, 434, 711, 1233
Bme18I GGWCC 3 cut(s) 63, 430, 526
BmeRI GACNNNNNGTC 1 cut(s) 422
BmgT120I GGNCC 5 cut(s) 63, 311, 430, 526, 1196
BmrFI CCNGG 6 cut(s) 299, 320, 428, 434, 711, 1233
BmsI GCATC 4 cut(s) 42, 131, 184, 850
BpmI CTGGAG 1 cut(s) 944
BpuEI CTTGAG 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 1233
Bsa29I ATCGAT 1 cut(s) 50
BsaAI YACGTR 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 1038
BsaJI CCNNGG 7 cut(s) 30, 219, 298, 319, 522, 558, 709
BsaWI WCCGGW 2 cut(s) 149, 872
Bsc4I CCNNNNNNNGG 7 cut(s) 156, 319, 320, 427, 433, 795, 1034
Bse1I ACTGG 2 cut(s) 454, 1158
Bse3DI GCAATG 3 cut(s) 42, 238, 885
BseBI CCWGG 5 cut(s) 299, 320, 428, 434, 711
BseCI ATCGAT 1 cut(s) 50
BseDI CCNNGG 7 cut(s) 30, 219, 298, 319, 522, 558, 709
BseGI GGATG 4 cut(s) 146, 445, 467, 890
BseLI CCNNNNNNNGG 7 cut(s) 156, 319, 320, 427, 433, 795, 1034
BseMI GCAATG 3 cut(s) 42, 238, 885
BseMII CTCAG 2 cut(s) 657, 711
BseNI ACTGG 2 cut(s) 454, 1158
BseRI GAGGAG 3 cut(s) 19, 217, 573
BseYI CCCAGC 4 cut(s) 942, 1097, 1245, 1329
BsgI GTGCAG 4 cut(s) 766, 1062, 1138, 1259
Bsh1236I CGCG 5 cut(s) 1021, 1062, 1165, 1194, 1221
BshFI GGCC 6 cut(s) 139, 218, 297, 312, 1197, 1236
BshVI ATCGAT 1 cut(s) 50
BsiHKAI GWGCWC 2 cut(s) 164, 1320
BsiSI CCGG 4 cut(s) 150, 873, 1233, 1313
BslFI GGGAC 5 cut(s) 250, 315, 491, 905, 1088
BslI CCNNNNNNNGG 7 cut(s) 156, 319, 320, 427, 433, 795, 1034
BsmAI GTCTC 2 cut(s) 893, 1291
BsmFI GGGAC 5 cut(s) 250, 315, 491, 905, 1088
BsnI GGCC 6 cut(s) 139, 218, 297, 312, 1197, 1236
Bsp1286I GDGCHC 2 cut(s) 164, 1320
Bsp1407I TGTACA 1 cut(s) 3
BspACI CCGC 6 cut(s) 766, 971, 995, 1056, 1163, 1194
BspANI GGCC 6 cut(s) 139, 218, 297, 312, 1197, 1236
BspCNI CTCAG 2 cut(s) 656, 712
BspDI ATCGAT 1 cut(s) 50
BspFNI CGCG 5 cut(s) 1021, 1062, 1165, 1194, 1221
BspHI TCATGA 1 cut(s) 856
BspMAI CTGCAG 4 cut(s) 329, 986, 1088, 1327
BspMI ACCTGC 2 cut(s) 942, 975
BsrDI GCAATG 3 cut(s) 42, 238, 885
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 454, 1158
BssECI CCNNGG 7 cut(s) 30, 219, 298, 319, 522, 558, 709
BssNI GRCGYC 1 cut(s) 1038
BssT1I CCWWGG 2 cut(s) 219, 558
Bst2UI CCWGG 5 cut(s) 299, 320, 428, 434, 711
Bst4CI ACNGT 3 cut(s) 256, 681, 1285
Bst6I CTCTTC 1 cut(s) 858
BstACI GRCGYC 1 cut(s) 1038
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 182
BstDEI CTNAG 2 cut(s) 643, 720
BstF5I GGATG 4 cut(s) 146, 445, 467, 890
BstFNI CGCG 5 cut(s) 1021, 1062, 1165, 1194, 1221
BstHHI GCGC 5 cut(s) 1023, 1064, 1072, 1167, 1221
BstMAI GTCTC 2 cut(s) 893, 1291
BstNI CCWGG 5 cut(s) 299, 320, 428, 434, 711
BstNSI RCATGY 2 cut(s) 344, 766
BstSCI CCNGG 6 cut(s) 297, 318, 426, 432, 709, 1231
BstSFI CTRYAG 5 cut(s) 325, 592, 982, 1084, 1323
BstSNI TACGTA 1 cut(s) 182
BstUI CGCG 5 cut(s) 1021, 1062, 1165, 1194, 1221
Bsu15I ATCGAT 1 cut(s) 50
BsuRI GGCC 6 cut(s) 139, 218, 297, 312, 1197, 1236
BsuTUI ATCGAT 1 cut(s) 50
BtsCI GGATG 4 cut(s) 146, 445, 467, 890
BtsI GCAGTG 2 cut(s) 1041, 1081
BtsIMutI CAGTG 4 cut(s) 261, 686, 1041, 1081
BveI ACCTGC 2 cut(s) 942, 975
CaiI CAGNNNCTG 2 cut(s) 914, 967
CciI TCATGA 1 cut(s) 856
CfoI GCGC 5 cut(s) 1023, 1064, 1072, 1167, 1221
Cfr13I GGNCC 5 cut(s) 63, 311, 430, 526, 1196
ClaI ATCGAT 1 cut(s) 50
CseI GACGC 4 cut(s) 186, 1027, 1090, 1191
Csp6I GTAC 2 cut(s) 4, 512
CviAII CATG 8 cut(s) 76, 341, 366, 539, 763, 790, 795, 857
CviQI GTAC 2 cut(s) 4, 512
DdeI CTNAG 2 cut(s) 643, 720
DriI GACNNNNNGTC 1 cut(s) 422
EaeI YGGCCR 1 cut(s) 1234
Eam1104I CTCTTC 1 cut(s) 858
Eam1105I GACNNNNNGTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 858
Ecl136II GAGCTC 2 cut(s) 162, 1318
Eco105I TACGTA 1 cut(s) 182
Eco130I CCWWGG 2 cut(s) 219, 558
Eco24I GRGCYC 2 cut(s) 164, 1320
Eco32I GATATC 1 cut(s) 658
Eco47I GGWCC 3 cut(s) 63, 430, 526
Eco53kI GAGCTC 2 cut(s) 162, 1318
EcoICRI GAGCTC 2 cut(s) 162, 1318
EcoRII CCWGG 5 cut(s) 297, 318, 426, 432, 709
EcoRV GATATC 1 cut(s) 658
EcoT14I CCWWGG 2 cut(s) 219, 558
EcoT38I GRGCYC 2 cut(s) 164, 1320
ErhI CCWWGG 2 cut(s) 219, 558
FaeI CATG 8 cut(s) 79, 344, 369, 542, 766, 793, 798, 860
FaqI GGGAC 5 cut(s) 250, 315, 491, 905, 1088
FatI CATG 8 cut(s) 75, 340, 365, 538, 762, 789, 794, 856
FauI CCCGC 2 cut(s) 759, 1063
FblI GTMKAC 1 cut(s) 131
FokI GGATG 4 cut(s) 133, 452, 474, 897
FriOI GRGCYC 2 cut(s) 164, 1320
FspBI CTAG 4 cut(s) 287, 345, 1013, 1339
GlaI GCGC 5 cut(s) 1022, 1063, 1071, 1166, 1220
GsaI CCCAGC 4 cut(s) 946, 1101, 1249, 1333
GsuI CTGGAG 1 cut(s) 944
HaeIII GGCC 6 cut(s) 139, 218, 297, 312, 1197, 1236
HapII CCGG 4 cut(s) 150, 873, 1233, 1313
HgaI GACGC 4 cut(s) 186, 1027, 1090, 1191
HhaI GCGC 5 cut(s) 1023, 1064, 1072, 1167, 1221
Hin1I GRCGYC 1 cut(s) 1038
Hin1II CATG 8 cut(s) 79, 344, 369, 542, 766, 793, 798, 860
Hin6I GCGC 5 cut(s) 1021, 1062, 1070, 1165, 1219
HinP1I GCGC 5 cut(s) 1021, 1062, 1070, 1165, 1219
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HindIII AAGCTT 2 cut(s) 800, 831
HinfI GANTC 7 cut(s) 18, 47, 212, 277, 417, 578, 620
HpaII CCGG 4 cut(s) 150, 873, 1233, 1313
HphI GGTGA 6 cut(s) 164, 283, 419, 464, 484, 748
Hpy166II GTNNAC 6 cut(s) 6, 66, 132, 371, 529, 760
Hpy188I TCNGA 4 cut(s) 211, 577, 619, 670
Hpy188III TCNNGA 2 cut(s) 174, 857
Hpy8I GTNNAC 6 cut(s) 6, 66, 132, 371, 529, 760
Hpy99I CGWCG 4 cut(s) 118, 202, 244, 1122
HpyAV CCTTC 5 cut(s) 181, 582, 727, 1101, 1317
HpyCH4III ACNGT 3 cut(s) 256, 681, 1285
HpyCH4IV ACGT 2 cut(s) 12, 181
HpyF3I CTNAG 2 cut(s) 643, 720
HpySE526I ACGT 2 cut(s) 12, 181
Hsp92I GRCGYC 1 cut(s) 1038
Hsp92II CATG 8 cut(s) 79, 344, 369, 542, 766, 793, 798, 860
HspAI GCGC 5 cut(s) 1021, 1062, 1070, 1165, 1219
LmnI GCTCC 5 cut(s) 159, 875, 1056, 1315, 1323
LweI GCATC 4 cut(s) 42, 131, 184, 850
MaeI CTAG 4 cut(s) 287, 345, 1013, 1339
MaeII ACGT 2 cut(s) 12, 181
MaeIII GTNAC 4 cut(s) 109, 250, 271, 1039
MboII GAAGA 2 cut(s) 256, 845
MhlI GDGCHC 2 cut(s) 164, 1320
MluCI AATT 1 cut(s) 752
MlyI GAGTC 2 cut(s) 286, 411
MmeI TCCRAC 1 cut(s) 394
MslI CAYNNNNRTG 3 cut(s) 549, 788, 1184
MspI CCGG 4 cut(s) 150, 873, 1233, 1313
MspR9I CCNGG 6 cut(s) 299, 320, 428, 434, 711, 1233
MvaI CCWGG 5 cut(s) 299, 320, 428, 434, 711
MvnI CGCG 5 cut(s) 1021, 1062, 1165, 1194, 1221
NciI CCSGG 1 cut(s) 1233
NlaIII CATG 8 cut(s) 79, 344, 369, 542, 766, 793, 798, 860
NmeAIII GCCGAG 1 cut(s) 11
NmuCI GTSAC 3 cut(s) 250, 271, 1039
NspI RCATGY 2 cut(s) 344, 766
OliI CACNNNNGTG 1 cut(s) 1184
PaeI GCATGC 1 cut(s) 344
PagI TCATGA 1 cut(s) 856
PaqCI CACCTGC 2 cut(s) 942, 975
PfeI GAWTC 5 cut(s) 18, 47, 212, 578, 620
PflMI CCANNNNNTGG 1 cut(s) 795
PfoI TCCNGGA 1 cut(s) 426
PleI GAGTC 2 cut(s) 285, 411
PpsI GAGTC 2 cut(s) 285, 411
Ppu21I YACGTR 1 cut(s) 182
Psp124BI GAGCTC 2 cut(s) 164, 1320
Psp6I CCWGG 5 cut(s) 297, 318, 426, 432, 709
PspFI CCCAGC 4 cut(s) 942, 1097, 1245, 1329
PspGI CCWGG 5 cut(s) 297, 318, 426, 432, 709
PspPI GGNCC 5 cut(s) 63, 311, 430, 526, 1196
PstI CTGCAG 4 cut(s) 329, 986, 1088, 1327
PstNI CAGNNNCTG 2 cut(s) 914, 967
RsaI GTAC 2 cut(s) 5, 513
RsaNI GTAC 2 cut(s) 4, 512
RseI CAYNNNNRTG 3 cut(s) 549, 788, 1184
SacI GAGCTC 2 cut(s) 164, 1320
SalI GTCGAC 1 cut(s) 130
Sau96I GGNCC 5 cut(s) 63, 311, 430, 526, 1196
SchI GAGTC 2 cut(s) 286, 411
ScrFI CCNGG 6 cut(s) 299, 320, 428, 434, 711, 1233
SduI GDGCHC 2 cut(s) 164, 1320
SfaNI GCATC 4 cut(s) 42, 131, 184, 850
SfcI CTRYAG 5 cut(s) 325, 592, 982, 1084, 1323
SinI GGWCC 3 cut(s) 63, 430, 526
SmiMI CAYNNNNRTG 3 cut(s) 549, 788, 1184
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
SnaBI TACGTA 1 cut(s) 182
SphI GCATGC 1 cut(s) 344
Sse9I AATT 1 cut(s) 752
SsiI CCGC 6 cut(s) 766, 971, 995, 1056, 1163, 1194
SspI AATATT 1 cut(s) 403
SspMI CTAG 4 cut(s) 287, 345, 1013, 1339
SstI GAGCTC 2 cut(s) 164, 1320
StyD4I CCNGG 6 cut(s) 297, 318, 426, 432, 709, 1231
StyI CCWWGG 2 cut(s) 219, 558
TaaI ACNGT 3 cut(s) 256, 681, 1285
TaiI ACGT 2 cut(s) 15, 184
TaqI TCGA 5 cut(s) 50, 131, 164, 200, 836
TaqII GACCGA 1 cut(s) 514
TasI AATT 1 cut(s) 752
TatI WGTACW 1 cut(s) 3
TauI GCSGC 3 cut(s) 973, 997, 1197
TfiI GAWTC 5 cut(s) 18, 47, 212, 578, 620
TscAI CASTG 4 cut(s) 261, 686, 1048, 1088
TseFI GTSAC 3 cut(s) 250, 271, 1039
Tsp45I GTSAC 3 cut(s) 250, 271, 1039
TspDTI ATGAA 4 cut(s) 354, 456, 618, 845
TspGWI ACGGA 3 cut(s) 388, 613, 690
TspRI CASTG 4 cut(s) 261, 686, 1048, 1088
Van91I CCANNNNNTGG 1 cut(s) 795
VpaK11BI GGWCC 3 cut(s) 63, 430, 526
XceI RCATGY 2 cut(s) 344, 766
XcmI CCANNNNNNNNNTGG 3 cut(s) 73, 305, 545
XmiI GTMKAC 1 cut(s) 131
XspI CTAG 4 cut(s) 287, 345, 1013, 1339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.