RLG00000017170

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000947
Physical Location & Seq
Forward (+)
13664621 .. 13667073
2453 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017170

Sequence Viewer

Length: 1464 bp
ATGGGGGATTTATGCGAGGATTTGTGGGTTGAGATTTTGGGTAGACTATCATCGGAGAAGGACTTGGTGCCATGCATGAGCGTGTCCAGGTTATGGCACCGAATAACATCTGGTATTTGGGTGCAGAGATTTTGGGCGCAGTCCCCTCCTTTGGGTCTTTTCTTCCGCACCGCCACCACCAGCACCACCACCGTAGACAAGGTATTGCATCATATGAATTATATTTCTTTATATAATTATCATGCCATGGAAGATAACCTGGAAAGCACTCGTTCTTGCGGAGGTCAATTTTATAACAAAGAATCGTATAGGTCCAAAAAGTCTCATTGGCAGTATTGTGATCGACAATGGTATAAGCCGGGTGCCACTGCTGAATCCACTGATCGTGATGAGTACCTAAATGGTTGCAATGGTTTAGTTTTGTTAATGAAATCAGCAACTTATCAGTTTTATGTTTGCAATCCCATCACAAGACAACAAGTTGCCATACCTAAAGCCTGTGTCCACCAAAACCATGATGATCAGCATTTTTGTGCTGCTTTGGCTTTTGACCCTTCCGAATCTGCTCATCACTTCAGAGTTGTTAGAATTGATTATTCTGCATCCTACTCAGCTGTGCTGGATATATTCTCGACTGAATATGGACTGTGGGTTCGACATTGGCTGCAAATTGACCCAGGTTTTACTGAGGGATTCAAAAGCTCCACGTTGTGCAGGCATTTTGTTTACTTGCGAGGTAGGCTATACAGCATAGCCCTATCCTGGAACCTTTTATGCATTGACCTCAATTCTGTTGCAGCTTCTGCCCTTGAACTTCCTGTTCCAGAGGATGAAAAGACCGGAGCCATGGGATGTCTTGGGGTGTCGATGAATAGTCTCTGCTATATGAAGCGAATGCTCGATAATTCGAAGGACTTTCACAATCTGGCAGTTTGGTATAATGTTGAAGAATCTGGGGAATGGATTCTCAGATATAGTGTTTCTTGTCGCTTATTGGGATACGGATTCCAGTCTCGAGGTTATGACTACGATGATTCCATGGAACCCTGTGCAATAAGTCCAACTTCAGATCTCTTGTTCTATGGTAATCCCAACTTGATTTGTTGTATCCACCTTAAAAGCGAAAAGATGAAATTCGTTTGCAAAACAAGCTCTAAAATAGATCCACCTGCTTCTTTCTTGACATTACGTGCATGCTTTGTACCTTTCTACACTCAGTTGAACAAGAGGAATGACGTCTCCACTCCATTAGCAACCGCTTGTGAGCGCACAGAAATTTTAAGTGTGGAAGTACCATACGGGAAACAAGAAGATGGTGAATCTGTTGAAGTAATAAATGTTAAGTTATATGATAGTTTGCAAAAAAAGTCATCCCCGTCATTGGTTTATCCCAGTGAAATCATGGGAATGCATTTAGAGCTTCAACAAATCCCCCAATTTCTACTTGATATAATGGCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

488

Amino Acids

55.69

Weight (kDa)

5.93

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 128 - 283 3.3e-08 KIB1-4 beta-propeller
b-prop_At3g26010-like PF24750 131 - 333 2.7e-13 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 135 - 312 4.5e-08 F-box associated beta propeller domain
Beta-prop_AT5G49610-like PF23635 136 - 385 5.8e-07 F-box protein AT5G49610-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
AarI CACCTGC 1 cut(s) 1177
AatII GACGTC 1 cut(s) 1239
Acc36I ACCTGC 1 cut(s) 1177
AccB1I GGYRCC 3 cut(s) 67, 96, 362
AccB7I CCANNNNNTGG 1 cut(s) 93
AccI GTMKAC 2 cut(s) 43, 195
AciI CCGC 4 cut(s) 166, 171, 279, 1257
AclWI GGATC 1 cut(s) 1157
AcsI RAATTY 2 cut(s) 1133, 1275
AcuI CTGAAG 2 cut(s) 559, 1050
AcyI GRCGYC 1 cut(s) 1236
AdeI CACNNNGTG 1 cut(s) 711
AfaI GTAC 3 cut(s) 395, 1203, 1293
AfiI CCNNNNNNNGG 5 cut(s) 93, 151, 152, 762, 1381
AgsI TTSAA 6 cut(s) 697, 812, 947, 1222, 1328, 1424
AjnI CCWGG 4 cut(s) 86, 258, 676, 761
AloI GAACNNNNNNTCC 2 cut(s) 636, 668
AluBI AGCT 5 cut(s) 614, 702, 800, 1152, 1420
AluI AGCT 5 cut(s) 614, 702, 800, 1152, 1420
Alw26I GTCTC 4 cut(s) 327, 881, 1017, 1243
AlwI GGATC 1 cut(s) 1157
AlwNI CAGNNNCTG 1 cut(s) 803
Ama87I CYCGRG 1 cut(s) 1014
ApeKI GCWGC 3 cut(s) 536, 664, 797
ApoI RAATTY 2 cut(s) 1133, 1275
ArsI GACNNNNNNTTYG 2 cut(s) 636, 668
Asp700I GAANNNNTTC 1 cut(s) 963
AspLEI GCGC 2 cut(s) 139, 1269
AspS9I GGNCC 1 cut(s) 312
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 1 cut(s) 1328
AsuII TTCGAA 1 cut(s) 908
AvaI CYCGRG 1 cut(s) 1014
AvaII GGWCC 1 cut(s) 312
BanI GGYRCC 3 cut(s) 67, 96, 362
BbvI GCAGC 3 cut(s) 523, 651, 809
BccI CCATC 2 cut(s) 473, 1307
BciT130I CCWGG 4 cut(s) 88, 260, 678, 763
BciVI GTATCC 2 cut(s) 992, 1118
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 1 cut(s) 360
BcoDI GTCTC 4 cut(s) 327, 881, 1017, 1243
BfuAI ACCTGC 1 cut(s) 1177
BfuI GTATCC 2 cut(s) 992, 1118
BglII AGATCT 1 cut(s) 1069
BisI GCNGC 3 cut(s) 537, 665, 798
BlsI GCNGC 3 cut(s) 538, 666, 799
Bme1390I CCNGG 5 cut(s) 88, 260, 360, 678, 763
Bme18I GGWCC 1 cut(s) 312
BmeT110I CYCGRG 1 cut(s) 1014
BmgT120I GGNCC 1 cut(s) 312
BmiI GGNNCC 6 cut(s) 69, 98, 364, 767, 844, 1044
BmrFI CCNGG 5 cut(s) 88, 260, 360, 678, 763
BmrI ACTGGG 1 cut(s) 1386
BmsI GCATC 2 cut(s) 217, 611
BmuI ACTGGG 1 cut(s) 1386
Bpu14I TTCGAA 1 cut(s) 908
BpuMI CCSGG 1 cut(s) 360
BsaAI YACGTR 1 cut(s) 1190
BsaHI GRCGYC 1 cut(s) 1236
BsaJI CCNNGG 4 cut(s) 246, 676, 846, 1038
BsaWI WCCGGW 1 cut(s) 839
Bsc4I CCNNNNNNNGG 5 cut(s) 93, 151, 152, 762, 1381
Bse1I ACTGG 2 cut(s) 1009, 1392
Bse3DI GCAATG 2 cut(s) 415, 1464
BseBI CCWGG 4 cut(s) 88, 260, 678, 763
BseDI CCNNGG 4 cut(s) 246, 676, 846, 1038
BseGI GGATG 4 cut(s) 602, 835, 857, 1370
BseLI CCNNNNNNNGG 5 cut(s) 93, 151, 152, 762, 1381
BseMI GCAATG 2 cut(s) 415, 1464
BseMII CTCAG 4 cut(s) 624, 678, 982, 1229
BseNI ACTGG 2 cut(s) 1009, 1392
BseXI GCAGC 3 cut(s) 523, 651, 809
BsgI GTGCAG 2 cut(s) 143, 733
BshNI GGYRCC 3 cut(s) 67, 96, 362
BsiHKCI CYCGRG 1 cut(s) 1014
BsiSI CCGG 2 cut(s) 359, 840
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 5 cut(s) 93, 151, 152, 762, 1381
BsmAI GTCTC 4 cut(s) 327, 881, 1017, 1243
BsmBI CGTCTC 1 cut(s) 1243
BsmFI GGGAC 1 cut(s) 127
BsmI GAATGC 2 cut(s) 900, 1413
BsoBI CYCGRG 1 cut(s) 1014
Bsp119I TTCGAA 1 cut(s) 908
Bsp143I GATC 5 cut(s) 340, 382, 520, 1069, 1162
Bsp19I CCATGG 3 cut(s) 246, 846, 1038
BspACI CCGC 4 cut(s) 166, 171, 279, 1257
BspCNI CTCAG 4 cut(s) 623, 679, 981, 1228
BspLI GGNNCC 6 cut(s) 69, 98, 364, 767, 844, 1044
BspMI ACCTGC 1 cut(s) 1177
BspPI GGATC 1 cut(s) 1157
BspT104I TTCGAA 1 cut(s) 908
BspT107I GGYRCC 3 cut(s) 67, 96, 362
BsrDI GCAATG 2 cut(s) 415, 1464
BsrI ACTGG 2 cut(s) 1009, 1392
BssECI CCNNGG 4 cut(s) 246, 676, 846, 1038
BssMI GATC 5 cut(s) 340, 382, 520, 1069, 1162
BssNI GRCGYC 1 cut(s) 1236
BssT1I CCWWGG 3 cut(s) 246, 846, 1038
Bst2UI CCWGG 4 cut(s) 88, 260, 678, 763
Bst4CI ACNGT 2 cut(s) 193, 648
BstACI GRCGYC 1 cut(s) 1236
BstAPI GCANNNNNTGC 1 cut(s) 803
BstBAI YACGTR 1 cut(s) 1190
BstBI TTCGAA 1 cut(s) 908
BstC8I GCNNGC 2 cut(s) 716, 1195
BstDEI CTNAG 4 cut(s) 610, 687, 968, 1215
BstDSI CCRYGG 3 cut(s) 246, 846, 1038
BstF5I GGATG 4 cut(s) 602, 835, 857, 1370
BstHHI GCGC 2 cut(s) 139, 1269
BstKTI GATC 5 cut(s) 343, 385, 523, 1072, 1165
BstMAI GTCTC 4 cut(s) 327, 881, 1017, 1243
BstMBI GATC 5 cut(s) 340, 382, 520, 1069, 1162
BstMWI GCNNNNNNNGC 5 cut(s) 542, 739, 803, 1149, 1417
BstNI CCWGG 4 cut(s) 88, 260, 678, 763
BstNSI RCATGY 1 cut(s) 1197
BstSCI CCNGG 5 cut(s) 86, 258, 358, 676, 761
BstV1I GCAGC 3 cut(s) 523, 651, 809
BstX2I RGATCY 2 cut(s) 1069, 1162
BstYI RGATCY 2 cut(s) 1069, 1162
BsuI GTATCC 2 cut(s) 992, 1118
BtgI CCRYGG 3 cut(s) 246, 846, 1038
BtsCI GGATG 4 cut(s) 602, 835, 857, 1370
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 3 cut(s) 366, 378, 1399
BveI ACCTGC 1 cut(s) 1177
Cac8I GCNNGC 2 cut(s) 716, 1195
CaiI CAGNNNCTG 1 cut(s) 803
CfoI GCGC 2 cut(s) 139, 1269
Cfr13I GGNCC 1 cut(s) 312
Csp6I GTAC 3 cut(s) 394, 1202, 1292
CviAII CATG 9 cut(s) 72, 76, 242, 247, 515, 847, 1039, 1194, 1402
CviQI GTAC 3 cut(s) 394, 1202, 1292
DdeI CTNAG 4 cut(s) 610, 687, 968, 1215
DpnI GATC 5 cut(s) 342, 384, 522, 1071, 1164
DpnII GATC 5 cut(s) 340, 382, 520, 1069, 1162
DraIII CACNNNGTG 1 cut(s) 711
Eco130I CCWWGG 3 cut(s) 246, 846, 1038
Eco47I GGWCC 1 cut(s) 312
Eco57I CTGAAG 2 cut(s) 559, 1050
Eco88I CYCGRG 1 cut(s) 1014
EcoRII CCWGG 4 cut(s) 86, 258, 676, 761
EcoT14I CCWWGG 3 cut(s) 246, 846, 1038
EcoT22I ATGCAT 3 cut(s) 77, 779, 1413
ErhI CCWWGG 3 cut(s) 246, 846, 1038
Esp3I CGTCTC 1 cut(s) 1243
FaeI CATG 9 cut(s) 75, 79, 245, 250, 518, 850, 1042, 1197, 1405
FalI AAGNNNNNCTT 2 cut(s) 1048, 1080
FaqI GGGAC 1 cut(s) 127
FatI CATG 9 cut(s) 71, 75, 241, 246, 514, 846, 1038, 1193, 1401
FauNDI CATATG 1 cut(s) 213
FbaI TGATCA 1 cut(s) 520
FblI GTMKAC 2 cut(s) 43, 195
Fnu4HI GCNGC 3 cut(s) 537, 665, 798
FokI GGATG 4 cut(s) 589, 842, 864, 1357
Fsp4HI GCNGC 3 cut(s) 537, 665, 798
GlaI GCGC 2 cut(s) 138, 1268
GluI GCNGC 3 cut(s) 537, 665, 798
HapII CCGG 2 cut(s) 359, 840
HhaI GCGC 2 cut(s) 139, 1269
Hin1I GRCGYC 1 cut(s) 1236
Hin1II CATG 9 cut(s) 75, 79, 245, 250, 518, 850, 1042, 1197, 1405
Hin6I GCGC 2 cut(s) 137, 1267
HinP1I GCGC 2 cut(s) 137, 1267
HinfI GANTC 9 cut(s) 302, 374, 560, 693, 950, 964, 1005, 1034, 1319
HpaII CCGG 2 cut(s) 359, 840
HphI GGTGA 1 cut(s) 1328
Hpy166II GTNNAC 4 cut(s) 44, 196, 505, 727
Hpy188I TCNGA 5 cut(s) 55, 559, 578, 971, 1069
Hpy188III TCNNGA 5 cut(s) 386, 631, 824, 1014, 1180
Hpy8I GTNNAC 4 cut(s) 44, 196, 505, 727
HpyAV CCTTC 3 cut(s) 52, 564, 904
HpyCH4III ACNGT 2 cut(s) 193, 648
HpyCH4IV ACGT 3 cut(s) 707, 1189, 1236
HpyF10VI GCNNNNNNNGC 5 cut(s) 542, 739, 803, 1149, 1417
HpyF3I CTNAG 4 cut(s) 610, 687, 968, 1215
HpySE526I ACGT 3 cut(s) 707, 1189, 1236
Hsp92I GRCGYC 1 cut(s) 1236
Hsp92II CATG 9 cut(s) 75, 79, 245, 250, 518, 850, 1042, 1197, 1405
HspAI GCGC 2 cut(s) 137, 1267
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 5 cut(s) 340, 382, 520, 1069, 1162
LmnI GCTCC 2 cut(s) 707, 842
Lsp1109I GCAGC 3 cut(s) 523, 651, 809
LweI GCATC 2 cut(s) 217, 611
MaeII ACGT 3 cut(s) 707, 1189, 1236
MalI GATC 5 cut(s) 342, 384, 522, 1071, 1164
MboI GATC 5 cut(s) 340, 382, 520, 1069, 1162
MboII GAAGA 4 cut(s) 154, 263, 959, 1322
MflI RGATCY 2 cut(s) 1069, 1162
MmeI TCCRAC 1 cut(s) 1085
MnlI CCTC 9 cut(s) 10, 156, 275, 682, 728, 794, 820, 1010, 1221
Mph1103I ATGCAT 3 cut(s) 77, 779, 1413
MroXI GAANNNNTTC 1 cut(s) 963
MseI TTAA 4 cut(s) 425, 1116, 1280, 1341
MslI CAYNNNNRTG 3 cut(s) 80, 531, 1406
MspA1I CMGCKG 1 cut(s) 614
MspI CCGG 2 cut(s) 359, 840
MspR9I CCNGG 5 cut(s) 88, 260, 360, 678, 763
Mva1269I GAATGC 2 cut(s) 900, 1413
MvaI CCWGG 4 cut(s) 88, 260, 678, 763
MwoI GCNNNNNNNGC 5 cut(s) 542, 739, 803, 1149, 1417
NciI CCSGG 1 cut(s) 360
NcoI CCATGG 3 cut(s) 246, 846, 1038
NdeI CATATG 1 cut(s) 213
NdeII GATC 5 cut(s) 340, 382, 520, 1069, 1162
NlaIII CATG 9 cut(s) 75, 79, 245, 250, 518, 850, 1042, 1197, 1405
NlaIV GGNNCC 6 cut(s) 69, 98, 364, 767, 844, 1044
NsiI ATGCAT 3 cut(s) 77, 779, 1413
NspI RCATGY 1 cut(s) 1197
NspV TTCGAA 1 cut(s) 908
PaeI GCATGC 1 cut(s) 1197
PaeR7I CTCGAG 1 cut(s) 1014
PaqCI CACCTGC 1 cut(s) 1177
PctI GAATGC 2 cut(s) 900, 1413
PdmI GAANNNNTTC 1 cut(s) 963
PfeI GAWTC 9 cut(s) 302, 374, 560, 693, 950, 964, 1005, 1034, 1319
PflMI CCANNNNNTGG 1 cut(s) 93
PfoI TCCNGGA 1 cut(s) 761
PkrI GCNGC 3 cut(s) 538, 666, 799
Ppu21I YACGTR 1 cut(s) 1190
PsiI TTATAA 1 cut(s) 294
Psp6I CCWGG 4 cut(s) 86, 258, 676, 761
PspGI CCWGG 4 cut(s) 86, 258, 676, 761
PspN4I GGNNCC 6 cut(s) 69, 98, 364, 767, 844, 1044
PspPI GGNCC 1 cut(s) 312
PstNI CAGNNNCTG 1 cut(s) 803
PsuI RGATCY 2 cut(s) 1069, 1162
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 3 cut(s) 395, 1203, 1293
RsaNI GTAC 3 cut(s) 394, 1202, 1292
RseI CAYNNNNRTG 3 cut(s) 80, 531, 1406
SaqAI TTAA 4 cut(s) 425, 1116, 1280, 1341
SatI GCNGC 3 cut(s) 537, 665, 798
Sau3AI GATC 5 cut(s) 340, 382, 520, 1069, 1162
Sau96I GGNCC 1 cut(s) 312
ScrFI CCNGG 5 cut(s) 88, 260, 360, 678, 763
SfaNI GCATC 2 cut(s) 217, 611
Sfr274I CTCGAG 1 cut(s) 1014
SfuI TTCGAA 1 cut(s) 908
SinI GGWCC 1 cut(s) 312
SlaI CTCGAG 1 cut(s) 1014
SmiMI CAYNNNNRTG 3 cut(s) 80, 531, 1406
SmlI CTYRAG 1 cut(s) 1014
SmoI CTYRAG 1 cut(s) 1014
SphI GCATGC 1 cut(s) 1197
SsiI CCGC 4 cut(s) 166, 171, 279, 1257
StyD4I CCNGG 5 cut(s) 86, 258, 358, 676, 761
StyI CCWWGG 3 cut(s) 246, 846, 1038
TaaI ACNGT 2 cut(s) 193, 648
TaiI ACGT 3 cut(s) 710, 1192, 1239
TaqI TCGA 7 cut(s) 343, 632, 655, 866, 900, 908, 1015
TfiI GAWTC 9 cut(s) 302, 374, 560, 693, 950, 964, 1005, 1034, 1319
Tru1I TTAA 4 cut(s) 425, 1116, 1280, 1341
Tru9I TTAA 4 cut(s) 425, 1116, 1280, 1341
TscAI CASTG 3 cut(s) 373, 385, 1399
TseI GCWGC 3 cut(s) 536, 664, 797
TspDTI ATGAA 6 cut(s) 230, 443, 846, 884, 902, 1145
TspGWI ACGGA 1 cut(s) 1017
TspRI CASTG 3 cut(s) 373, 385, 1399
Van91I CCANNNNNTGG 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 312
XapI RAATTY 2 cut(s) 1133, 1275
XceI RCATGY 1 cut(s) 1197
XcmI CCANNNNNNNNNTGG 1 cut(s) 1399
XhoI CTCGAG 1 cut(s) 1014
XmiI GTMKAC 2 cut(s) 43, 195
XmnI GAANNNNTTC 1 cut(s) 963
ZraI GACGTC 1 cut(s) 1237
Zsp2I ATGCAT 3 cut(s) 77, 779, 1413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.