RchiOBHm_Chr2g0102561

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000947
Physical Location & Seq
Reverse (-)
14037742 .. 14039193
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47698

Sequence Viewer

Length: 1452 bp
ATGGGGAATTTATGCGAGGATTTGTGGGTTGAGATCTTGGGTAGACTGTCATCTGAGAAAGACTTGGTGCCATGCATGAGCGTGTCCAAGTTATGGCACAGAATAGCATCAGATCTTTGGGTGAGGAGATTTTGGGCGCAGTCGCCTCCTTTGGGTGTTTACTTTCGCACCATCCAGAATCCTTCGAGTCCTTGCATGCTCACCATGGTGGACAAGGTGCCGTCTTATTTGCCTAGCATTAATTATATCTCACTATATAATTATCATAACATGGATGATAACCTCGAAAGCACCAGTGGTTATCATCTCGGTACGTTATTTAATGGCTTAAGTGACCTGTTTGAGGGCTATAAGCGACGGTGGCAATTTTATCGACATTATAAACATGGTCACGATGATCATGATGATCAGTATCTACACGGCTGCAATGGATTGCTTCTGTTATTGAAATCGGGAACTTATCAGTTTTATGTGTGCAATCCCATTATCACACAACAAGTCCCCGTACCTAAAGCTTGTGTCCACCAAAACCATGAGCAGTTTTGTGCTGCCTTGGCTTTTGATCCTTCTGAATCTCCTCGGCACTACAGAGTTGTGAGGATTGATTACTCTGAATCCGTTTCATCTACCTCAAACTCTGTCATGTTTGACATATTTTCATCTAAATACGGACAGTGGGTAAGACACAGGTTGCAACTCGACCCAGGTTTTACTGAGGGGTTCGAAAAGGTAAAGCTGTGCAGGCAATTTTTTTACTTGCGGGGCAAGTTATATAGCTTAGCCATGTCCTGGAAGATTTTATGCATTGACCTCAAAACTGTTGAAGCTTCAGCCCTTGAACTTCCTGTCCCGGAGGCCAATAAGAACGGAGCGATGGGATGTCTTGGGGTGTCGATGGACCTTCTCTGCTATATAAAGCGTATAAAGCGTATGCCTTCCAGTAGGTTTCACGATCTGGTAGTTTGGTACTATGATGATCGTTGTGAATCTAGTGAATGGACTCGCAGATATAATGTTAGTTGCGGCTTGTTGGGTTATGGAATAAAGTATCAAGGGTATGATTATGATGATACTGTGGAACCCTACGCAATAAGTCCTAGTTCTGATGTCTTGTTCTTTGGCACTCCCAACTTGATTAGTTGCTACCACCTCAAAAGCGAAAAGTACAAGCCCGTGTGTCACCTATCTCCCTCTAAAATTGTACCAGATTACTTCTGGGCATTGCGTGCTTGCTTCGTACCTTTCTACCAGTTGGGAAACAAAGCAGTGGTTCCTGAGGGGAAGGGCATAGAAATCTTGACTGCAGAAGCACAATGTGAAGAAGAGAAAGATGTTGACAAAGTTGAAGTGATAAACGTCAAACTATGTGATCGTCATAAAAAGCCGCTGCCACCGTTGATTTATCCTAGCGAAATTACTGAAATGTATTTGGAATTTGAGTGTCCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

483

Amino Acids

55.88

Weight (kDa)

6.35

Isoelectric Point (pI)

58.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 6 - 44 1.5e-06 F-box-like
b-prop_At3g26010-like PF24750 129 - 342 2.5e-11 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 137 - 294 2.1e-08 F-box associated beta propeller domain
Beta-prop_AT5G49610-like PF23635 142 - 282 3.5e-06 F-box protein AT5G49610-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AccB1I GGYRCC 2 cut(s) 67, 217
AccB7I CCANNNNNTGG 2 cut(s) 93, 789
AccI GTMKAC 1 cut(s) 43
AciI CCGC 3 cut(s) 760, 1023, 1385
AclWI GGATC 1 cut(s) 557
AcsI RAATTY 2 cut(s) 7, 1433
AcuI CTGAAG 1 cut(s) 813
AdeI CACNNNGTG 1 cut(s) 1316
AfaI GTAC 6 cut(s) 313, 507, 968, 1166, 1203, 1239
AfiI CCNNNNNNNGG 4 cut(s) 93, 152, 343, 789
AflII CTTAAG 1 cut(s) 328
AgsI TTSAA 4 cut(s) 448, 824, 839, 1346
AjnI CCWGG 2 cut(s) 703, 788
AleI CACNNNNGTG 1 cut(s) 206
AloI GAACNNNNNNTCC 2 cut(s) 831, 863
AluBI AGCT 4 cut(s) 515, 736, 777, 827
AluI AGCT 4 cut(s) 515, 736, 777, 827
AlwI GGATC 1 cut(s) 557
AoxI GGCC 1 cut(s) 855
ApeKI GCWGC 3 cut(s) 423, 548, 1387
ApoI RAATTY 2 cut(s) 7, 1433
AseI ATTAAT 1 cut(s) 240
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 898
AsuC2I CCSGG 1 cut(s) 851
AsuHPI GGTGA 3 cut(s) 133, 193, 1172
AsuII TTCGAA 1 cut(s) 723
AvaII GGWCC 1 cut(s) 898
AxyI CCTNAGG 1 cut(s) 1275
BanI GGYRCC 2 cut(s) 67, 217
BbvI GCAGC 3 cut(s) 410, 535, 1374
BccI CCATC 3 cut(s) 179, 868, 889
BceAI ACGGC 2 cut(s) 205, 436
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciT130I CCWGG 2 cut(s) 705, 790
BclI TGATCA 2 cut(s) 397, 406
BcnI CCSGG 1 cut(s) 851
BfaI CTAG 4 cut(s) 234, 990, 1098, 1407
BfmI CTRYAG 2 cut(s) 586, 1302
BfrI CTTAAG 1 cut(s) 328
BglII AGATCT 2 cut(s) 33, 112
BisI GCNGC 5 cut(s) 424, 549, 1024, 1385, 1388
BlpI GCTNAGC 1 cut(s) 778
BlsI GCNGC 5 cut(s) 425, 550, 1025, 1386, 1389
Bme1390I CCNGG 3 cut(s) 705, 790, 851
Bme18I GGWCC 1 cut(s) 898
BmgT120I GGNCC 1 cut(s) 898
BmiI GGNNCC 4 cut(s) 69, 219, 1080, 1272
BmrFI CCNGG 3 cut(s) 705, 790, 851
BmsI GCATC 1 cut(s) 116
Bpu1102I GCTNAGC 1 cut(s) 778
Bpu14I TTCGAA 1 cut(s) 723
BpuMI CCSGG 1 cut(s) 851
BsaBI GATNNNNATC 1 cut(s) 411
BsaJI CCNNGG 4 cut(s) 204, 552, 578, 703
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 152, 343, 789
Bse1I ACTGG 3 cut(s) 294, 939, 1249
Bse21I CCTNAGG 1 cut(s) 1275
Bse3DI GCAATG 2 cut(s) 433, 1220
Bse8I GATNNNNATC 1 cut(s) 411
BseBI CCWGG 2 cut(s) 705, 790
BseDI CCNNGG 4 cut(s) 204, 552, 578, 703
BseGI GGATG 3 cut(s) 171, 280, 884
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 4 cut(s) 93, 152, 343, 789
BseMI GCAATG 2 cut(s) 433, 1220
BseMII CTCAG 3 cut(s) 45, 705, 1266
BseNI ACTGG 3 cut(s) 294, 939, 1249
BseRI GAGGAG 2 cut(s) 139, 567
BseXI GCAGC 3 cut(s) 410, 535, 1374
BsgI GTGCAG 1 cut(s) 760
BshFI GGCC 1 cut(s) 857
BshNI GGYRCC 2 cut(s) 67, 217
BsiSI CCGG 1 cut(s) 851
BslFI GGGAC 3 cut(s) 485, 833, 1428
BslI CCNNNNNNNGG 4 cut(s) 93, 152, 343, 789
BsmFI GGGAC 3 cut(s) 485, 833, 1428
BsnI GGCC 1 cut(s) 857
Bsp119I TTCGAA 1 cut(s) 723
Bsp143I GATC 8 cut(s) 33, 112, 397, 406, 562, 952, 976, 1369
Bsp1720I GCTNAGC 1 cut(s) 778
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 3 cut(s) 760, 1023, 1385
BspANI GGCC 1 cut(s) 857
BspCNI CTCAG 3 cut(s) 46, 706, 1267
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 4 cut(s) 69, 219, 1080, 1272
BspMAI CTGCAG 1 cut(s) 1306
BspPI GGATC 1 cut(s) 557
BspT104I TTCGAA 1 cut(s) 723
BspT107I GGYRCC 2 cut(s) 67, 217
BspTI CTTAAG 1 cut(s) 328
BsrDI GCAATG 2 cut(s) 433, 1220
BsrI ACTGG 3 cut(s) 294, 939, 1249
BssECI CCNNGG 4 cut(s) 204, 552, 578, 703
BssMI GATC 8 cut(s) 33, 112, 397, 406, 562, 952, 976, 1369
BssT1I CCWWGG 2 cut(s) 204, 552
Bst2UI CCWGG 2 cut(s) 705, 790
Bst4CI ACNGT 6 cut(s) 48, 360, 675, 820, 1075, 1395
Bst6I CTCTTC 1 cut(s) 1317
BstAFI CTTAAG 1 cut(s) 328
BstAPI GCANNNNNTGC 1 cut(s) 1226
BstBI TTCGAA 1 cut(s) 723
BstC8I GCNNGC 4 cut(s) 197, 743, 1227, 1231
BstDEI CTNAG 4 cut(s) 54, 714, 778, 1275
BstDSI CCRYGG 1 cut(s) 204
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 3 cut(s) 171, 280, 884
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 8 cut(s) 36, 115, 400, 409, 565, 955, 979, 1372
BstMBI GATC 8 cut(s) 33, 112, 397, 406, 562, 952, 976, 1369
BstMWI GCNNNNNNNGC 5 cut(s) 361, 554, 742, 925, 1226
BstNI CCWGG 2 cut(s) 705, 790
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 3 cut(s) 703, 788, 849
BstSFI CTRYAG 2 cut(s) 586, 1302
BstV1I GCAGC 3 cut(s) 410, 535, 1374
BstX2I RGATCY 2 cut(s) 33, 112
BstYI RGATCY 2 cut(s) 33, 112
Bsu36I CCTNAGG 1 cut(s) 1275
BsuRI GGCC 1 cut(s) 857
BtgI CCRYGG 1 cut(s) 204
BtgZI GCGATG 1 cut(s) 887
BtsCI GGATG 3 cut(s) 171, 280, 884
BtsI GCAGTG 1 cut(s) 1272
BtsIMutI CAGTG 3 cut(s) 301, 680, 1272
Cac8I GCNNGC 4 cut(s) 197, 743, 1227, 1231
CciI TCATGA 1 cut(s) 400
CfoI GCGC 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 898
Csp6I GTAC 6 cut(s) 312, 506, 967, 1165, 1202, 1238
CviQI GTAC 6 cut(s) 312, 506, 967, 1165, 1202, 1238
DdeI CTNAG 4 cut(s) 54, 714, 778, 1275
DpnI GATC 8 cut(s) 35, 114, 399, 408, 564, 954, 978, 1371
DpnII GATC 8 cut(s) 33, 112, 397, 406, 562, 952, 976, 1369
DraIII CACNNNGTG 1 cut(s) 1316
Eam1104I CTCTTC 1 cut(s) 1317
EarI CTCTTC 1 cut(s) 1317
Eco130I CCWWGG 2 cut(s) 204, 552
Eco47I GGWCC 1 cut(s) 898
Eco57I CTGAAG 1 cut(s) 813
Eco81I CCTNAGG 1 cut(s) 1275
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoRII CCWGG 2 cut(s) 703, 788
EcoT14I CCWWGG 2 cut(s) 204, 552
EcoT22I ATGCAT 2 cut(s) 77, 806
ErhI CCWWGG 2 cut(s) 204, 552
FaqI GGGAC 3 cut(s) 485, 833, 1428
FauI CCCGC 1 cut(s) 753
FbaI TGATCA 2 cut(s) 397, 406
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 5 cut(s) 424, 549, 1024, 1385, 1388
FokI GGATG 3 cut(s) 158, 287, 891
Fsp4HI GCNGC 5 cut(s) 424, 549, 1024, 1385, 1388
FspBI CTAG 4 cut(s) 234, 990, 1098, 1407
GlaI GCGC 1 cut(s) 138
GluI GCNGC 5 cut(s) 424, 549, 1024, 1385, 1388
HaeIII GGCC 1 cut(s) 857
HapII CCGG 1 cut(s) 851
HhaI GCGC 1 cut(s) 139
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 1 cut(s) 1336
HindII GTYRAC 1 cut(s) 1336
HindIII AAGCTT 2 cut(s) 513, 825
HinfI GANTC 6 cut(s) 178, 187, 572, 614, 986, 1000
HpaII CCGG 1 cut(s) 851
HphI GGTGA 3 cut(s) 133, 193, 1172
Hpy166II GTNNAC 5 cut(s) 44, 160, 211, 523, 1336
Hpy188I TCNGA 5 cut(s) 55, 112, 571, 613, 1105
Hpy188III TCNNGA 7 cut(s) 175, 392, 401, 453, 950, 1274, 1297
Hpy8I GTNNAC 5 cut(s) 44, 160, 211, 523, 1336
Hpy99I CGWCG 1 cut(s) 360
HpyAV CCTTC 5 cut(s) 192, 576, 911, 945, 1276
HpyCH4III ACNGT 6 cut(s) 48, 360, 675, 820, 1075, 1395
HpyCH4IV ACGT 2 cut(s) 314, 1356
HpyCH4V TGCA 8 cut(s) 75, 195, 426, 477, 694, 741, 804, 1304
HpyF10VI GCNNNNNNNGC 5 cut(s) 361, 554, 742, 925, 1226
HpyF3I CTNAG 4 cut(s) 54, 714, 778, 1275
HpySE526I ACGT 2 cut(s) 314, 1356
HspAI GCGC 1 cut(s) 137
Ksp22I TGATCA 2 cut(s) 397, 406
Kzo9I GATC 8 cut(s) 33, 112, 397, 406, 562, 952, 976, 1369
LmnI GCTCC 1 cut(s) 869
Lsp1109I GCAGC 3 cut(s) 410, 535, 1374
LweI GCATC 1 cut(s) 116
MaeI CTAG 4 cut(s) 234, 990, 1098, 1407
MaeII ACGT 2 cut(s) 314, 1356
MaeIII GTNAC 3 cut(s) 332, 389, 1178
MalI GATC 8 cut(s) 35, 114, 399, 408, 564, 954, 978, 1371
MboI GATC 8 cut(s) 33, 112, 397, 406, 562, 952, 976, 1369
MboII GAAGA 3 cut(s) 805, 1331, 1334
MflI RGATCY 2 cut(s) 33, 112
MluCI AATT 9 cut(s) 7, 241, 259, 365, 746, 1197, 1413, 1433, 1447
MlyI GAGTC 2 cut(s) 196, 994
Mph1103I ATGCAT 2 cut(s) 77, 806
MseI TTAA 4 cut(s) 240, 321, 329, 1450
MslI CAYNNNNRTG 2 cut(s) 80, 206
MspA1I CMGCKG 1 cut(s) 1387
MspCI CTTAAG 1 cut(s) 328
MspI CCGG 1 cut(s) 851
MspR9I CCNGG 3 cut(s) 705, 790, 851
MvaI CCWGG 2 cut(s) 705, 790
MwoI GCNNNNNNNGC 5 cut(s) 361, 554, 742, 925, 1226
NciI CCSGG 1 cut(s) 851
NcoI CCATGG 1 cut(s) 204
NdeII GATC 8 cut(s) 33, 112, 397, 406, 562, 952, 976, 1369
NlaIV GGNNCC 4 cut(s) 69, 219, 1080, 1272
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 3 cut(s) 332, 389, 1178
NsiI ATGCAT 2 cut(s) 77, 806
NspI RCATGY 1 cut(s) 199
NspV TTCGAA 1 cut(s) 723
OliI CACNNNNGTG 1 cut(s) 206
PaeI GCATGC 1 cut(s) 199
PagI TCATGA 1 cut(s) 400
PfeI GAWTC 4 cut(s) 178, 572, 614, 986
PflMI CCANNNNNTGG 2 cut(s) 93, 789
PfoI TCCNGGA 2 cut(s) 788, 849
PkrI GCNGC 5 cut(s) 425, 550, 1025, 1386, 1389
PleI GAGTC 2 cut(s) 195, 994
PpsI GAGTC 2 cut(s) 195, 994
PshBI ATTAAT 1 cut(s) 240
PsiI TTATAA 1 cut(s) 381
Psp6I CCWGG 2 cut(s) 703, 788
PspGI CCWGG 2 cut(s) 703, 788
PspN4I GGNNCC 4 cut(s) 69, 219, 1080, 1272
PspPI GGNCC 1 cut(s) 898
PstI CTGCAG 1 cut(s) 1306
PsuI RGATCY 2 cut(s) 33, 112
RsaI GTAC 6 cut(s) 313, 507, 968, 1166, 1203, 1239
RsaNI GTAC 6 cut(s) 312, 506, 967, 1165, 1202, 1238
RseI CAYNNNNRTG 2 cut(s) 80, 206
SaqAI TTAA 4 cut(s) 240, 321, 329, 1450
SatI GCNGC 5 cut(s) 424, 549, 1024, 1385, 1388
Sau3AI GATC 8 cut(s) 33, 112, 397, 406, 562, 952, 976, 1369
Sau96I GGNCC 1 cut(s) 898
SchI GAGTC 2 cut(s) 196, 994
ScrFI CCNGG 3 cut(s) 705, 790, 851
SfaNI GCATC 1 cut(s) 116
SfcI CTRYAG 2 cut(s) 586, 1302
SfuI TTCGAA 1 cut(s) 723
SinI GGWCC 1 cut(s) 898
SmiMI CAYNNNNRTG 2 cut(s) 80, 206
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
SphI GCATGC 1 cut(s) 199
Sse9I AATT 9 cut(s) 7, 241, 259, 365, 746, 1197, 1413, 1433, 1447
SsiI CCGC 3 cut(s) 760, 1023, 1385
SspMI CTAG 4 cut(s) 234, 990, 1098, 1407
StyD4I CCNGG 3 cut(s) 703, 788, 849
StyI CCWWGG 2 cut(s) 204, 552
TaaI ACNGT 6 cut(s) 48, 360, 675, 820, 1075, 1395
TaiI ACGT 2 cut(s) 317, 1359
TaqI TCGA 6 cut(s) 185, 285, 373, 699, 723, 893
TasI AATT 9 cut(s) 7, 241, 259, 365, 746, 1197, 1413, 1433, 1447
TatI WGTACW 1 cut(s) 1164
TauI GCSGC 2 cut(s) 1026, 1387
TfiI GAWTC 4 cut(s) 178, 572, 614, 986
Tru1I TTAA 4 cut(s) 240, 321, 329, 1450
Tru9I TTAA 4 cut(s) 240, 321, 329, 1450
TscAI CASTG 3 cut(s) 301, 680, 1272
TseFI GTSAC 3 cut(s) 332, 389, 1178
TseI GCWGC 3 cut(s) 423, 548, 1387
Tsp45I GTSAC 3 cut(s) 332, 389, 1178
TspDTI ATGAA 2 cut(s) 612, 648
TspGWI ACGGA 3 cut(s) 607, 684, 882
TspRI CASTG 3 cut(s) 301, 680, 1272
Van91I CCANNNNNTGG 2 cut(s) 93, 789
Vha464I CTTAAG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 898
VspI ATTAAT 1 cut(s) 240
XagI CCTNNNNNAGG 1 cut(s) 341
XapI RAATTY 2 cut(s) 7, 1433
XceI RCATGY 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 1212
XmiI GTMKAC 1 cut(s) 43
XspI CTAG 4 cut(s) 234, 990, 1098, 1407
Zsp2I ATGCAT 2 cut(s) 77, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.