FvH4_1g14191

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000947
Physical Location & Seq
Forward (+)
7856581 .. 7858459
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14191.t1

Sequence Viewer

Length: 1431 bp
ATGGAGAATTTATCTGAAGATCTGTGGTTTGAGATACTCGGTAGGATATCCTCAGAGAAGGATTTAGTGCCATGCATGAGTGTGTCCAGGTTATGGCACCGAATAGCATCGGGTCTTTGGGTGAAGAAATTTTGGGCGCAGTCGTCCCCTCCTTTGGGTCTTTTTTACTGCACCGTCGCCAACTCCACCACATTGGGTAATCTGCACTATTATCATCGCATGAATTATATCTCTTTATATAATTATTGTGTGTCGGAAGATAACCTGGAAAGGACCCGCCTTTTCAGACTACAAAATTTTTGTCACGACATAGTATCTTATAGGATGAGGAAGGGGCATTGGCAGATTTTTGATCGAGATTTGTATGATGCCGATCATGATGATGATGAGGACGAAGAAGACGATGTTTTGGATTCAGAATATCACACATTGATCAATCAAAGAGAGACTCAACAACTAAAAGAAAGAAATACTGATCGTGATCAGTACTTAAACGGTTGTAATGGGTTACTTCTATTGTTGAAATCAGCAACTCGTCAGTTTTATGTTTGCAATCCCATCACACGACAACAAGTCGCAATACCTAAAGCTTGTGTGCACAAAAACCAGGATTGTCAGCATTTTTGTGCTGCTTTGGCTTTTGACCCTTCTGAATCTCCTCATCACTACCGAGTTGTAAGAATTGATTATTCTCAGGAATTGGCTTCCACAGCCTTCCTCGACATATTTTCATCCGAATATGGTCACTGGATTCGACATAGGTTGCATTTTGATGATTCGAGTCTCACTAAGGGGTTCAAAGGCTGCAAGTTGTGCAGGCAACTGTTTTACTTGCAAGGAAAGTTATATAGCTTAACCATGTCGTGGAAGCTCCTTTGCATCGACCTCAAGACCATTGAAGCTTGTACCCTTGAACTTCCTGTCCCGGAGACCGATAGAAGCGGAGCCATGGGATGTCTTGGGGTGTCAAGAGACATTCTTTGCTATATGAAGCTTATGCATGATAAATCATCAAGTGCTCCGCTTCACAATTTGACTCGGTTGCATAAGAGGAACCACGTCTTCAATCCATTAGAAGTGGGAGCAATGAGTTCTAAGGGCACAGACATTTTGAGTGTGGAAGCATCAAATGGCAAACAAGAATATGGTGAATCAGTTAAAGTAATTGATGTCGAGTTATATGATACAGATACTTTGCAAAAAGTCTCATTGGTTTATCCCAGTGAAATCATGGGAATGCATTTAGAGCTTGAGCAAATGAGAAGGGAACGCTACACATATAGTGATAGTGATGATGATGATGATGATGGTGATGATGATGATGATGATGATGATGATGATGATGAACATGAACATGAATATGAACATGTTGTAGATGAGCTTGAAGGTCTTGTAGGGAGTATGATGAAAAAGAGGAAAATAAGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

477

Amino Acids

55.42

Weight (kDa)

5.08

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 150 - 253 8.8e-06 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 152 - 309 9.5e-09 KIB1-4 beta-propeller
FBA_1 PF07734 156 - 319 1.1e-08 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 158 - 338 1.6e-11 F-box protein At3g26010-like, beta-propeller
Beta-prop_AT5G49610-like PF23635 167 - 307 5.6e-06 F-box protein AT5G49610-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 96
AccB7I CCANNNNNTGG 2 cut(s) 93, 864
AciI CCGC 3 cut(s) 277, 942, 1022
AcsI RAATTY 3 cut(s) 7, 128, 295
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 2 cut(s) 488, 907
AfiI CCNNNNNNNGG 4 cut(s) 93, 154, 155, 864
AflIII ACRYGT 1 cut(s) 1366
AgsI TTSAA 6 cut(s) 523, 799, 899, 914, 1066, 1385
AhdI GACNNNNNGTC 1 cut(s) 572
AjiI CACGTC 1 cut(s) 1060
AjnI CCWGG 3 cut(s) 86, 264, 606
AloI GAACNNNNNNTCC 2 cut(s) 906, 938
AluBI AGCT 7 cut(s) 590, 852, 871, 902, 994, 1249, 1381
AluI AGCT 7 cut(s) 590, 852, 871, 902, 994, 1249, 1381
Alw21I GWGCWC 2 cut(s) 600, 1021
Alw26I GTCTC 5 cut(s) 440, 788, 923, 966, 1210
Alw44I GTGCAC 1 cut(s) 596
ApaLI GTGCAC 1 cut(s) 596
ApeKI GCWGC 2 cut(s) 629, 804
ApoI RAATTY 3 cut(s) 7, 128, 295
ArsI GACNNNNNNTTYG 2 cut(s) 286, 318
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 273
AsuC2I CCSGG 1 cut(s) 926
AsuHPI GGTGA 3 cut(s) 133, 1160, 1322
AvaII GGWCC 1 cut(s) 273
BaeGI GKGCMC 2 cut(s) 600, 1103
BanI GGYRCC 1 cut(s) 96
BbsI GAAGAC 2 cut(s) 405, 1054
Bbv12I GWGCWC 2 cut(s) 600, 1021
BbvI GCAGC 2 cut(s) 616, 791
BccI CCATC 2 cut(s) 566, 1301
BciT130I CCWGG 3 cut(s) 88, 266, 608
BclI TGATCA 2 cut(s) 432, 481
BcnI CCSGG 1 cut(s) 926
BcoDI GTCTC 5 cut(s) 440, 788, 923, 966, 1210
BglII AGATCT 1 cut(s) 19
BisI GCNGC 2 cut(s) 630, 805
BlsI GCNGC 2 cut(s) 631, 806
BmcAI AGTACT 1 cut(s) 488
Bme1390I CCNGG 4 cut(s) 88, 266, 608, 926
Bme18I GGWCC 1 cut(s) 273
BmeRI GACNNNNNGTC 1 cut(s) 572
BmgBI CACGTC 1 cut(s) 1060
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 4 cut(s) 98, 275, 946, 1055
BmrFI CCNGG 4 cut(s) 88, 266, 608, 926
BmrI ACTGGG 1 cut(s) 1215
BmsI GCATC 4 cut(s) 116, 358, 888, 1133
BmuI ACTGGG 1 cut(s) 1215
BpiI GAAGAC 2 cut(s) 405, 1054
BpuEI CTTGAG 2 cut(s) 872, 1271
BpuMI CCSGG 1 cut(s) 926
BsaBI GATNNNNATC 2 cut(s) 372, 480
BsaI GGTCTC 1 cut(s) 923
BsaJI CCNNGG 1 cut(s) 948
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 154, 155, 864
Bse1I ACTGG 2 cut(s) 752, 1221
Bse3DI GCAATG 1 cut(s) 1092
Bse8I GATNNNNATC 2 cut(s) 372, 480
BseBI CCWGG 3 cut(s) 88, 266, 608
BseDI CCNNGG 1 cut(s) 948
BseGI GGATG 3 cut(s) 330, 731, 959
BseJI GATNNNNATC 2 cut(s) 372, 480
BseLI CCNNNNNNNGG 4 cut(s) 93, 154, 155, 864
BseMI GCAATG 1 cut(s) 1092
BseMII CTCAG 2 cut(s) 66, 707
BseNI ACTGG 2 cut(s) 752, 1221
BseRI GAGGAG 1 cut(s) 648
BseSI GKGCMC 2 cut(s) 600, 1103
BseXI GCAGC 2 cut(s) 616, 791
BsgI GTGCAG 3 cut(s) 154, 188, 835
BshNI GGYRCC 1 cut(s) 96
BsiHKAI GWGCWC 2 cut(s) 600, 1021
BsiSI CCGG 1 cut(s) 926
BslFI GGGAC 2 cut(s) 130, 908
BslI CCNNNNNNNGG 4 cut(s) 93, 154, 155, 864
BsmAI GTCTC 5 cut(s) 440, 788, 923, 966, 1210
BsmFI GGGAC 2 cut(s) 130, 908
BsmI GAATGC 1 cut(s) 1242
Bso31I GGTCTC 1 cut(s) 923
Bsp1286I GDGCHC 3 cut(s) 600, 1021, 1103
Bsp143I GATC 6 cut(s) 19, 352, 373, 432, 475, 481
Bsp19I CCATGG 1 cut(s) 948
BspACI CCGC 3 cut(s) 277, 942, 1022
BspCNI CTCAG 2 cut(s) 65, 706
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 4 cut(s) 98, 275, 946, 1055
BspT107I GGYRCC 1 cut(s) 96
BspTNI GGTCTC 1 cut(s) 923
BsrDI GCAATG 1 cut(s) 1092
BsrI ACTGG 2 cut(s) 752, 1221
BssECI CCNNGG 1 cut(s) 948
BssMI GATC 6 cut(s) 19, 352, 373, 432, 475, 481
BssT1I CCWWGG 1 cut(s) 948
Bst2UI CCWGG 3 cut(s) 88, 266, 608
Bst4CI ACNGT 3 cut(s) 175, 497, 825
BstAPI GCANNNNNTGC 1 cut(s) 813
BstC8I GCNNGC 1 cut(s) 818
BstDEI CTNAG 4 cut(s) 52, 693, 789, 1095
BstDSI CCRYGG 1 cut(s) 948
BstF5I GGATG 3 cut(s) 330, 731, 959
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 6 cut(s) 22, 355, 376, 435, 478, 484
BstMAI GTCTC 5 cut(s) 440, 788, 923, 966, 1210
BstMBI GATC 6 cut(s) 19, 352, 373, 432, 475, 481
BstMWI GCNNNNNNNGC 4 cut(s) 635, 710, 813, 1246
BstNI CCWGG 3 cut(s) 88, 266, 608
BstNSI RCATGY 1 cut(s) 1370
BstSCI CCNGG 4 cut(s) 86, 264, 606, 924
BstSLI GKGCMC 2 cut(s) 600, 1103
BstV1I GCAGC 2 cut(s) 616, 791
BstV2I GAAGAC 2 cut(s) 405, 1054
BstX2I RGATCY 1 cut(s) 19
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 948
BtgZI GCGATG 1 cut(s) 200
BtrI CACGTC 1 cut(s) 1060
BtsCI GGATG 3 cut(s) 330, 731, 959
BtsIMutI CAGTG 2 cut(s) 745, 1228
Cac8I GCNNGC 1 cut(s) 818
CciI TCATGA 1 cut(s) 376
CfoI GCGC 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 273
Csp6I GTAC 2 cut(s) 487, 906
CviQI GTAC 2 cut(s) 487, 906
DdeI CTNAG 4 cut(s) 52, 693, 789, 1095
DpnI GATC 6 cut(s) 21, 354, 375, 434, 477, 483
DpnII GATC 6 cut(s) 19, 352, 373, 432, 475, 481
DriI GACNNNNNGTC 1 cut(s) 572
Eam1105I GACNNNNNGTC 1 cut(s) 572
Eco130I CCWWGG 1 cut(s) 948
Eco31I GGTCTC 1 cut(s) 923
Eco32I GATATC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 273
EcoRII CCWGG 3 cut(s) 86, 264, 606
EcoRV GATATC 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 948
EcoT22I ATGCAT 3 cut(s) 77, 1002, 1242
ErhI CCWWGG 1 cut(s) 948
FaqI GGGAC 2 cut(s) 130, 908
FauI CCCGC 1 cut(s) 284
FbaI TGATCA 2 cut(s) 432, 481
Fnu4HI GCNGC 2 cut(s) 630, 805
FokI GGATG 3 cut(s) 337, 718, 966
Fsp4HI GCNGC 2 cut(s) 630, 805
GlaI GCGC 1 cut(s) 138
GluI GCNGC 2 cut(s) 630, 805
HapII CCGG 1 cut(s) 926
HhaI GCGC 1 cut(s) 139
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HindIII AAGCTT 3 cut(s) 588, 900, 992
HinfI GANTC 8 cut(s) 413, 448, 653, 751, 776, 781, 1036, 1151
HpaII CCGG 1 cut(s) 926
HphI GGTGA 3 cut(s) 133, 1160, 1322
Hpy166II GTNNAC 1 cut(s) 598
Hpy188I TCNGA 7 cut(s) 16, 55, 256, 287, 418, 652, 736
Hpy188III TCNNGA 7 cut(s) 305, 356, 377, 479, 695, 889, 969
Hpy8I GTNNAC 1 cut(s) 598
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 6 cut(s) 52, 325, 657, 724, 1257, 1379
HpyCH4III ACNGT 3 cut(s) 175, 497, 825
HpyCH4IV ACGT 1 cut(s) 1059
HpyF10VI GCNNNNNNNGC 4 cut(s) 635, 710, 813, 1246
HpyF3I CTNAG 4 cut(s) 52, 693, 789, 1095
HpySE526I ACGT 1 cut(s) 1059
HspAI GCGC 1 cut(s) 137
Ksp22I TGATCA 2 cut(s) 432, 481
Kzo9I GATC 6 cut(s) 19, 352, 373, 432, 475, 481
LmnI GCTCC 4 cut(s) 876, 944, 1024, 1082
Lsp1109I GCAGC 2 cut(s) 616, 791
LweI GCATC 4 cut(s) 116, 358, 888, 1133
MaeII ACGT 1 cut(s) 1059
MaeIII GTNAC 3 cut(s) 302, 507, 743
MalI GATC 6 cut(s) 21, 354, 375, 434, 477, 483
MboI GATC 6 cut(s) 19, 352, 373, 432, 475, 481
MboII GAAGA 6 cut(s) 29, 136, 269, 407, 410, 1054
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 3 cut(s) 600, 1021, 1103
MluCI AATT 9 cut(s) 7, 128, 223, 241, 295, 681, 698, 1030, 1164
MlyI GAGTC 3 cut(s) 442, 790, 1030
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 9 cut(s) 61, 159, 321, 382, 669, 728, 896, 1044, 1407
Mph1103I ATGCAT 3 cut(s) 77, 1002, 1242
MseI TTAA 3 cut(s) 491, 854, 1158
MslI CAYNNNNRTG 7 cut(s) 80, 381, 624, 771, 1235, 1353, 1359
MspI CCGG 1 cut(s) 926
MspR9I CCNGG 4 cut(s) 88, 266, 608, 926
Mva1269I GAATGC 1 cut(s) 1242
MvaI CCWGG 3 cut(s) 88, 266, 608
MwoI GCNNNNNNNGC 4 cut(s) 635, 710, 813, 1246
NciI CCSGG 1 cut(s) 926
NcoI CCATGG 1 cut(s) 948
NdeII GATC 6 cut(s) 19, 352, 373, 432, 475, 481
NlaIV GGNNCC 4 cut(s) 98, 275, 946, 1055
NmuCI GTSAC 2 cut(s) 302, 743
NsiI ATGCAT 3 cut(s) 77, 1002, 1242
NspI RCATGY 1 cut(s) 1370
PagI TCATGA 1 cut(s) 376
PciI ACATGT 1 cut(s) 1366
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PctI GAATGC 1 cut(s) 1242
PfeI GAWTC 5 cut(s) 413, 653, 751, 776, 1151
PflMI CCANNNNNTGG 2 cut(s) 93, 864
PfoI TCCNGGA 1 cut(s) 924
PkrI GCNGC 2 cut(s) 631, 806
PleI GAGTC 3 cut(s) 442, 789, 1030
PpsI GAGTC 3 cut(s) 442, 789, 1030
PpuMI RGGWCCY 1 cut(s) 273
PscI ACATGT 1 cut(s) 1366
Psp5II RGGWCCY 1 cut(s) 273
Psp6I CCWGG 3 cut(s) 86, 264, 606
PspGI CCWGG 3 cut(s) 86, 264, 606
PspN4I GGNNCC 4 cut(s) 98, 275, 946, 1055
PspPI GGNCC 1 cut(s) 273
PspPPI RGGWCCY 1 cut(s) 273
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 2 cut(s) 488, 907
RsaNI GTAC 2 cut(s) 487, 906
RseI CAYNNNNRTG 7 cut(s) 80, 381, 624, 771, 1235, 1353, 1359
SaqAI TTAA 3 cut(s) 491, 854, 1158
SatI GCNGC 2 cut(s) 630, 805
Sau3AI GATC 6 cut(s) 19, 352, 373, 432, 475, 481
Sau96I GGNCC 1 cut(s) 273
ScaI AGTACT 1 cut(s) 488
SchI GAGTC 3 cut(s) 442, 790, 1030
ScrFI CCNGG 4 cut(s) 88, 266, 608, 926
SduI GDGCHC 3 cut(s) 600, 1021, 1103
SfaNI GCATC 4 cut(s) 116, 358, 888, 1133
SinI GGWCC 1 cut(s) 273
SmiMI CAYNNNNRTG 7 cut(s) 80, 381, 624, 771, 1235, 1353, 1359
SmlI CTYRAG 2 cut(s) 887, 1250
SmoI CTYRAG 2 cut(s) 887, 1250
Sse9I AATT 9 cut(s) 7, 128, 223, 241, 295, 681, 698, 1030, 1164
SsiI CCGC 3 cut(s) 277, 942, 1022
StyD4I CCNGG 4 cut(s) 86, 264, 606, 924
StyI CCWWGG 1 cut(s) 948
TaaI ACNGT 3 cut(s) 175, 497, 825
TaiI ACGT 1 cut(s) 1062
TaqI TCGA 6 cut(s) 355, 720, 754, 779, 882, 1173
TaqII GACCGA 1 cut(s) 947
TasI AATT 9 cut(s) 7, 128, 223, 241, 295, 681, 698, 1030, 1164
TatI WGTACW 1 cut(s) 486
TfiI GAWTC 5 cut(s) 413, 653, 751, 776, 1151
Tru1I TTAA 3 cut(s) 491, 854, 1158
Tru9I TTAA 3 cut(s) 491, 854, 1158
TscAI CASTG 2 cut(s) 752, 1228
TseFI GTSAC 2 cut(s) 302, 743
TseI GCWGC 2 cut(s) 629, 804
Tsp45I GTSAC 2 cut(s) 302, 743
TspDTI ATGAA 8 cut(s) 236, 720, 1004, 1359, 1365, 1371, 1377, 1421
TspRI CASTG 2 cut(s) 752, 1228
Van91I CCANNNNNTGG 2 cut(s) 93, 864
VneI GTGCAC 1 cut(s) 596
VpaK11BI GGWCC 1 cut(s) 273
XapI RAATTY 3 cut(s) 7, 128, 295
XceI RCATGY 1 cut(s) 1370
XcmI CCANNNNNNNNNTGG 1 cut(s) 1228
ZrmI AGTACT 1 cut(s) 488
Zsp2I ATGCAT 3 cut(s) 77, 1002, 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.