FvH4_1g14230

regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001461
Physical Location & Seq
Reverse (-)
7861531 .. 7863782
2252 bp
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UTR
Exon/CDS
Intron
FvH4_1g14230.t1

Sequence Viewer

Length: 744 bp
ATGTCTCAAGTTGATCCTGAAGGAGCTCCAGATGGTTTTGATGTGATTAGAGAGATCTTCTGTCCATTAACTGGGAGGAAAATCTTCTCCAGCCTAGTGTCAAGTATTGATAAGACACCTTGTTGGTATTTGTCCAATTATAAGGAGCTTGAGTTACTTGGTACCGGAACATATGGGGTTGTGGCTAAGTGTAAAAACAAGTTAGATGGCAAATGCTGTGCCATTAAGAAAGTTGATTTAGGTTCAACACATGACTGCTATGAATCTGCCATAAGTGAGGCAAGCATCTGGTCAAAGCTTGACCACCCTAATATTGTGAAATATTATGGCTGTTGGATAGAGAACCAGATATGGGGCGAAAAAGCAGAAGAAGATGGTCTCACTTATGAAAAGAAAAGACCATGTCTATACCTAAAACTGGAAGCCTGTGATAGCAGTCTTGTTGACACTTGGAGGACATTGACAGCAAGGCAGACTTCCAACATCATAGAAGGAGTTGTGGAAGGACTTGAGCACATCCATTCCTTTGGATTCAGTCATGGAGACCTCAGTAAAGACAACATCTTGATTTCTAAAGGAATTTCAAAAATATGTGATTTTGGAAGAGCTTCTGAAGGTACTCCTCAGGATCAAAAGGAAGACATCTATAAGTTGGGTCTTATGATTGTGGAATTGGTAGATCCTAGTGCCGTGTCAAAGTGCAAGACAAGGAATGTTCCCGAGAAGCTTCAAGAACTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 ko04140 ko04141 ko05160 ko05162 ko05164 ko05168 ko05169 map04138 map04140 map04141 map05160 map05162 map05164 map05168 map05169
Pfam Domains
Protein Families
Pkinase

Protein Analysis

248

Amino Acids

27.58

Weight (kDa)

5.27

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 47 - 211 1.2e-30 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 51 - 212 2.8e-17 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
Acc65I GGTACC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 161
AccB7I CCANNNNNTGG 1 cut(s) 71
AclWI GGATC 3 cut(s) 8, 636, 674
AcsI RAATTY 1 cut(s) 579
AcuI CTGAAG 2 cut(s) 39, 633
AfaI GTAC 2 cut(s) 163, 619
AfiI CCNNNNNNNGG 3 cut(s) 71, 352, 418
AgsI TTSAA 3 cut(s) 246, 585, 731
AluBI AGCT 5 cut(s) 26, 148, 298, 608, 727
AluI AGCT 5 cut(s) 26, 148, 298, 608, 727
Alw21I GWGCWC 2 cut(s) 28, 516
Alw26I GTCTC 3 cut(s) 9, 383, 537
AlwI GGATC 3 cut(s) 8, 636, 674
Ama87I CYCGRG 1 cut(s) 719
ApoI RAATTY 1 cut(s) 579
Asp700I GAANNNNTTC 2 cut(s) 83, 607
Asp718I GGTACC 1 cut(s) 161
AvaI CYCGRG 1 cut(s) 719
AxyI CCTNAGG 1 cut(s) 624
BanI GGYRCC 1 cut(s) 161
BanII GRGCYC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 2 cut(s) 28, 516
BccI CCATC 3 cut(s) 26, 200, 368
BceAI ACGGC 1 cut(s) 674
BcoDI GTCTC 3 cut(s) 9, 383, 537
BfaI CTAG 3 cut(s) 95, 684, 742
BglII AGATCT 1 cut(s) 54
BmeT110I CYCGRG 1 cut(s) 719
BmiI GGNNCC 1 cut(s) 163
BmrI ACTGGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 294
BmuI ACTGGG 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 645
BpmI CTGGAG 2 cut(s) 12, 73
BpuEI CTTGAG 2 cut(s) 170, 530
BsaI GGTCTC 2 cut(s) 383, 537
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 352, 418
Bse1I ACTGG 2 cut(s) 76, 423
Bse21I CCTNAGG 1 cut(s) 624
BseGI GGATG 1 cut(s) 516
BseLI CCNNNNNNNGG 3 cut(s) 71, 352, 418
BseMII CTCAG 2 cut(s) 562, 638
BseNI ACTGG 2 cut(s) 76, 423
BseRI GAGGAG 1 cut(s) 612
BshNI GGYRCC 1 cut(s) 161
BsiHKAI GWGCWC 2 cut(s) 28, 516
BsiHKCI CYCGRG 1 cut(s) 719
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 3 cut(s) 71, 352, 418
BsmAI GTCTC 3 cut(s) 9, 383, 537
Bso31I GGTCTC 2 cut(s) 383, 537
BsoBI CYCGRG 1 cut(s) 719
Bsp1286I GDGCHC 2 cut(s) 28, 516
Bsp143I GATC 4 cut(s) 13, 54, 628, 679
BspCNI CTCAG 2 cut(s) 561, 637
BspLI GGNNCC 1 cut(s) 163
BspPI GGATC 3 cut(s) 8, 636, 674
BspQI GCTCTTC 1 cut(s) 598
BspT107I GGYRCC 1 cut(s) 161
BspTNI GGTCTC 2 cut(s) 383, 537
BsrI ACTGG 2 cut(s) 76, 423
BssMI GATC 4 cut(s) 13, 54, 628, 679
Bst6I CTCTTC 1 cut(s) 598
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 3 cut(s) 186, 548, 624
BstF5I GGATG 1 cut(s) 516
BstKTI GATC 4 cut(s) 16, 57, 631, 682
BstMAI GTCTC 3 cut(s) 9, 383, 537
BstMBI GATC 4 cut(s) 13, 54, 628, 679
BstV2I GAAGAC 1 cut(s) 645
BstX2I RGATCY 2 cut(s) 54, 679
BstXI CCANNNNNNTGG 1 cut(s) 527
BstYI RGATCY 2 cut(s) 54, 679
Bsu36I CCTNAGG 1 cut(s) 624
BtsCI GGATG 1 cut(s) 516
Cac8I GCNNGC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 162, 618
CviAII CATG 3 cut(s) 251, 402, 539
CviJI RGCY 9 cut(s) 26, 93, 148, 185, 298, 330, 425, 608, 727
CviKI_1 RGCY 9 cut(s) 26, 93, 148, 185, 298, 330, 425, 608, 727
CviQI GTAC 2 cut(s) 162, 618
DdeI CTNAG 3 cut(s) 186, 548, 624
DpnI GATC 4 cut(s) 15, 56, 630, 681
DpnII GATC 4 cut(s) 13, 54, 628, 679
Eam1104I CTCTTC 1 cut(s) 598
EarI CTCTTC 1 cut(s) 598
Ecl136II GAGCTC 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 28
Eco31I GGTCTC 2 cut(s) 383, 537
Eco53kI GAGCTC 1 cut(s) 26
Eco57I CTGAAG 2 cut(s) 39, 633
Eco81I CCTNAGG 1 cut(s) 624
Eco88I CYCGRG 1 cut(s) 719
EcoICRI GAGCTC 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 28
FaeI CATG 3 cut(s) 254, 405, 542
FalI AAGNNNNNCTT 2 cut(s) 460, 492
FatI CATG 3 cut(s) 250, 401, 538
FauNDI CATATG 1 cut(s) 172
FokI GGATG 1 cut(s) 503
FriOI GRGCYC 1 cut(s) 28
FspBI CTAG 3 cut(s) 95, 684, 742
GsuI CTGGAG 2 cut(s) 12, 73
HapII CCGG 1 cut(s) 165
Hin1II CATG 3 cut(s) 254, 405, 542
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HindIII AAGCTT 2 cut(s) 296, 725
HinfI GANTC 2 cut(s) 263, 531
HpaII CCGG 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 1 cut(s) 613
Hpy188III TCNNGA 6 cut(s) 17, 29, 565, 626, 719, 731
Hpy8I GTNNAC 1 cut(s) 445
HpyAV CCTTC 4 cut(s) 14, 485, 497, 608
HpyCH4V TGCA 1 cut(s) 702
HpyF3I CTNAG 3 cut(s) 186, 548, 624
Hsp92II CATG 3 cut(s) 254, 405, 542
KpnI GGTACC 1 cut(s) 165
Kzo9I GATC 4 cut(s) 13, 54, 628, 679
LguI GCTCTTC 1 cut(s) 598
LmnI GCTCC 3 cut(s) 23, 31, 145
LweI GCATC 1 cut(s) 294
MaeI CTAG 3 cut(s) 95, 684, 742
MaeIII GTNAC 1 cut(s) 153
MalI GATC 4 cut(s) 15, 56, 630, 681
MboI GATC 4 cut(s) 13, 54, 628, 679
MboII GAAGA 6 cut(s) 49, 76, 380, 383, 615, 650
MflI RGATCY 2 cut(s) 54, 679
MhlI GDGCHC 2 cut(s) 28, 516
MluCI AATT 3 cut(s) 136, 579, 671
MmeI TCCRAC 2 cut(s) 314, 504
MnlI CCTC 5 cut(s) 69, 271, 447, 557, 633
MroXI GAANNNNTTC 2 cut(s) 83, 607
MseI TTAA 2 cut(s) 68, 225
MspI CCGG 1 cut(s) 165
NdeI CATATG 1 cut(s) 172
NdeII GATC 4 cut(s) 13, 54, 628, 679
NlaIII CATG 3 cut(s) 254, 405, 542
NlaIV GGNNCC 1 cut(s) 163
PciSI GCTCTTC 1 cut(s) 598
PdmI GAANNNNTTC 2 cut(s) 83, 607
PfeI GAWTC 2 cut(s) 263, 531
PflFI GACNNNGTC 1 cut(s) 402
PflMI CCANNNNNTGG 1 cut(s) 71
PsiI TTATAA 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 163
PsuI RGATCY 2 cut(s) 54, 679
PsyI GACNNNGTC 1 cut(s) 402
RsaI GTAC 2 cut(s) 163, 619
RsaNI GTAC 2 cut(s) 162, 618
SacI GAGCTC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 598
SaqAI TTAA 2 cut(s) 68, 225
Sau3AI GATC 4 cut(s) 13, 54, 628, 679
SduI GDGCHC 2 cut(s) 28, 516
SfaNI GCATC 1 cut(s) 294
SmlI CTYRAG 3 cut(s) 6, 149, 509
SmoI CTYRAG 3 cut(s) 6, 149, 509
Sse9I AATT 3 cut(s) 136, 579, 671
SspI AATATT 2 cut(s) 313, 323
SspMI CTAG 3 cut(s) 95, 684, 742
SstI GAGCTC 1 cut(s) 28
TasI AATT 3 cut(s) 136, 579, 671
TfiI GAWTC 2 cut(s) 263, 531
Tru1I TTAA 2 cut(s) 68, 225
Tru9I TTAA 2 cut(s) 68, 225
TspDTI ATGAA 2 cut(s) 276, 402
Tth111I GACNNNGTC 1 cut(s) 402
Van91I CCANNNNNTGG 1 cut(s) 71
XapI RAATTY 1 cut(s) 579
XmnI GAANNNNTTC 2 cut(s) 83, 607
XspI CTAG 3 cut(s) 95, 684, 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.