Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

13406178 .. 13408117

Gene Structure 1940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017150

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAGTGTATACTCTAGGTTCAGTTCCGACTACGTTTTGGACACCGAAGAATATCTTGGAAGTCGAGCAAATGGAGTTGTAGTTTGCTGCAAGAACCGGTTGGATGAAAAAACGTATGCTATAAAGAAAATCTCAGTATTCGTTGATGAGGATTTCCCATTTGATGAACTCATGAGGGAGGCTGTCATTTTATCCAAGTTCAATAACCCTGCAATTGTCCGATACCATTCGGTATGGATTGAGCCTACTTTTGTTGGCATAACTGGAGATCCTCAAATACCAACGGAAGAGCATCCAGTTGAGACAGACCAACCATGCCTGTACATTCAGCAGGAGCTATGTGACTGCACGGTAGAGCAAAAGATGAAGGCTGGAGCACTTATGCTGGAAGAATGTGCACACATTTTTTTGGAAACCGCGAAAGGCCTGAAACACATTCATGGTCACAATATCATGCATGGAGACATTAAGAAGGCAAATATATTCTTCAGCAACGGCCTGCTGAAAATTGGAGATTTTGGCCTCGCCCAGGAAATAGGCGATGGTACAAATGAGATTAAAACCAGACCTCCATACTCAGCACCTGATGAACTGGTTAATGCAAAAGCTGATGTGTTTAGTTTGGGTATTCTGCTGGTTGAGATGCTACTTAACAGCACTGGAGGACATAAAGCATCTGAGGTAATTCGTCTGCTGACAAAACGAGGAAAAGCAGAGCTTCCTGACAGCTGGCCTGATGGCTTACTAAAGACATGGGTGATGAGGATGCTAAAAAAGGAACCATCACAGAGACCTTCATCATCAAGGATAAGGAAGAAGAAAGTAGAAATAGAGGATGCTATTCTCAAGTTTCATCTGAAAAAGAAGCAGAAGGTACATGCTACTGCCGAAAAGCAGATTGAAGGTATGCAGCGGAAACACAGGAAGCCTAAGAATGTCAAAGGTAAAGTTCAAAGACACAGAAGGCATAGTCTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

327

Amino Acids

37.07

Weight (kDa)

9.02

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	15 - 273	1.4e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	15 - 272	8.2e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	9, 973
AccII	CGCG	1 cut(s)	419
AciI	CCGC	2 cut(s)	417, 913
AclWI	GGATC	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	472
AfaI	GTAC	3 cut(s)	323, 547, 876
AfiI	CCNNNNNNNGG	1 cut(s)	529
AgeI	ACCGGT	1 cut(s)	96
AgsI	TTSAA	3 cut(s)	202, 902, 953
AjnI	CCWGG	1 cut(s)	528
AjuI	GAANNNNNNNTTGG	2 cut(s)	39, 71
AluBI	AGCT	4 cut(s)	337, 608, 718, 729
AluI	AGCT	4 cut(s)	337, 608, 718, 729
Alw21I	GWGCWC	2 cut(s)	379, 400
Alw26I	GTCTC	3 cut(s)	296, 456, 784
Alw44I	GTGCAC	1 cut(s)	396
AlwI	GGATC	1 cut(s)	263
AlwNI	CAGNNNCTG	1 cut(s)	584
AoxI	GGCC	4 cut(s)	424, 496, 520, 731
ApaLI	GTGCAC	1 cut(s)	396
ApeKI	GCWGC	2 cut(s)	87, 910
AsiGI	ACCGGT	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	769
BaeGI	GKGCMC	1 cut(s)	400
Bbv12I	GWGCWC	2 cut(s)	379, 400
BbvI	GCAGC	2 cut(s)	74, 922
BccI	CCATC	3 cut(s)	536, 731, 790
BceAI	ACGGC	1 cut(s)	511
BciT130I	CCWGG	1 cut(s)	530
BcoDI	GTCTC	3 cut(s)	296, 456, 784
BfaI	CTAG	1 cut(s)	15
BisI	GCNGC	2 cut(s)	88, 911
BlsI	GCNGC	2 cut(s)	89, 912
Bme1390I	CCNGG	1 cut(s)	530
BmiI	GGNNCC	1 cut(s)	780
BmrFI	CCNGG	1 cut(s)	530
BmsI	GCATC	5 cut(s)	301, 633, 683, 756, 826
BpmI	CTGGAG	3 cut(s)	285, 393, 681
BpuEI	CTTGAG	1 cut(s)	830
BsaI	GGTCTC	1 cut(s)	784
BsaJI	CCNNGG	1 cut(s)	528
BsaWI	WCCGGW	1 cut(s)	96
BsaXI	ACNNNNNCTCC	4 cut(s)	66, 96, 553, 583
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	4 cut(s)	268, 296, 597, 664
BseBI	CCWGG	1 cut(s)	530
BseDI	CCNNGG	1 cut(s)	528
BseGI	GGATG	4 cut(s)	109, 292, 771, 841
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMII	CTCAG	3 cut(s)	147, 591, 669
BseNI	ACTGG	4 cut(s)	268, 296, 597, 664
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	2 cut(s)	74, 922
BsgI	GTGCAG	1 cut(s)	331
Bsh1236I	CGCG	1 cut(s)	419
BshFI	GGCC	4 cut(s)	426, 498, 522, 733
BshTI	ACCGGT	1 cut(s)	96
BsiHKAI	GWGCWC	2 cut(s)	379, 400
BsiSI	CCGG	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	3 cut(s)	296, 456, 784
BsnI	GGCC	4 cut(s)	426, 498, 522, 733
Bso31I	GGTCTC	1 cut(s)	784
Bsp1286I	GDGCHC	2 cut(s)	379, 400
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	2 cut(s)	417, 913
BspANI	GGCC	4 cut(s)	426, 498, 522, 733
BspCNI	CTCAG	3 cut(s)	146, 590, 670
BspFNI	CGCG	1 cut(s)	419
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	780
BspPI	GGATC	1 cut(s)	263
BspQI	GCTCTTC	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	784
BsrFI	RCCGGY	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	4 cut(s)	268, 296, 597, 664
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	528
BssMI	GATC	1 cut(s)	268
BssNAI	GTATAC	1 cut(s)	10
Bst1107I	GTATAC	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	2 cut(s)	352, 978
Bst6I	CTCTTC	1 cut(s)	282
BstAUI	TGTACA	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	500, 731
BstDEI	CTNAG	4 cut(s)	133, 577, 678, 930
BstENI	CCTNNNNNAGG	1 cut(s)	527
BstF5I	GGATG	4 cut(s)	109, 292, 771, 841
BstFNI	CGCG	1 cut(s)	419
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	3 cut(s)	296, 456, 784
BstMBI	GATC	1 cut(s)	268
BstNI	CCWGG	1 cut(s)	530
BstNSI	RCATGY	1 cut(s)	881
BstSCI	CCNGG	1 cut(s)	528
BstSLI	GKGCMC	1 cut(s)	400
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	2 cut(s)	74, 922
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BstZ17I	GTATAC	1 cut(s)	10
BsuRI	GGCC	4 cut(s)	426, 498, 522, 733
BtgZI	GCGATG	1 cut(s)	555
BtsCI	GGATG	4 cut(s)	109, 292, 771, 841
BtsIMutI	CAGTG	1 cut(s)	657
Cac8I	GCNNGC	2 cut(s)	500, 731
CaiI	CAGNNNCTG	1 cut(s)	584
CciI	TCATGA	1 cut(s)	171
Cfr10I	RCCGGY	1 cut(s)	96
Csp6I	GTAC	3 cut(s)	322, 546, 875
CspAI	ACCGGT	1 cut(s)	96
CviAII	CATG	7 cut(s)	172, 315, 440, 454, 458, 753, 878
CviQI	GTAC	3 cut(s)	322, 546, 875
DdeI	CTNAG	4 cut(s)	133, 577, 678, 930
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco147I	AGGCCT	1 cut(s)	426
Eco31I	GGTCTC	1 cut(s)	784
Eco57I	CTGAAG	1 cut(s)	472
EcoNI	CCTNNNNNAGG	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	528
EcoT22I	ATGCAT	1 cut(s)	459
FaeI	CATG	7 cut(s)	175, 318, 443, 457, 461, 756, 881
FalI	AAGNNNNNCTT	4 cut(s)	39, 71, 702, 734
FatI	CATG	7 cut(s)	171, 314, 439, 453, 457, 752, 877
FblI	GTMKAC	2 cut(s)	9, 973
Fnu4HI	GCNGC	2 cut(s)	88, 911
FokI	GGATG	4 cut(s)	116, 279, 778, 848
Fsp4HI	GCNGC	2 cut(s)	88, 911
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	2 cut(s)	88, 911
GsuI	CTGGAG	3 cut(s)	285, 393, 681
HaeIII	GGCC	4 cut(s)	426, 498, 522, 733
HapII	CCGG	1 cut(s)	97
Hin1II	CATG	7 cut(s)	175, 318, 443, 457, 461, 756, 881
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	1 cut(s)	769
Hpy166II	GTNNAC	3 cut(s)	10, 398, 974
Hpy188I	TCNGA	4 cut(s)	28, 221, 679, 858
Hpy188III	TCNNGA	2 cut(s)	172, 722
Hpy8I	GTNNAC	3 cut(s)	10, 398, 974
HpyAV	CCTTC	6 cut(s)	361, 466, 804, 865, 896, 957
HpyCH4III	ACNGT	2 cut(s)	352, 978
HpyCH4IV	ACGT	2 cut(s)	33, 113
HpyCH4V	TGCA	7 cut(s)	90, 212, 348, 398, 457, 602, 910
HpyF3I	CTNAG	4 cut(s)	133, 577, 678, 930
HpySE526I	ACGT	2 cut(s)	33, 113
Hsp92II	CATG	7 cut(s)	175, 318, 443, 457, 461, 756, 881
Kzo9I	GATC	1 cut(s)	268
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	2 cut(s)	334, 374
Lsp1109I	GCAGC	2 cut(s)	74, 922
LweI	GCATC	5 cut(s)	301, 633, 683, 756, 826
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	2 cut(s)	33, 113
MaeIII	GTNAC	2 cut(s)	341, 443
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	6 cut(s)	59, 299, 401, 478, 826, 829
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	2 cut(s)	379, 400
MluCI	AATT	3 cut(s)	213, 507, 684
MmeI	TCCRAC	2 cut(s)	51, 81
Mph1103I	ATGCAT	1 cut(s)	459
MseI	TTAA	4 cut(s)	468, 558, 597, 651
MslI	CAYNNNNRTG	1 cut(s)	438
MspA1I	CMGCKG	2 cut(s)	729, 913
MspI	CCGG	1 cut(s)	97
MspR9I	CCNGG	1 cut(s)	530
MunI	CAATTG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	530
MvnI	CGCG	1 cut(s)	419
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	7 cut(s)	175, 318, 443, 457, 461, 756, 881
NlaIV	GGNNCC	1 cut(s)	780
NmuCI	GTSAC	2 cut(s)	341, 443
NsiI	ATGCAT	1 cut(s)	459
NspI	RCATGY	1 cut(s)	881
PagI	TCATGA	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	282
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	89, 912
Psp6I	CCWGG	1 cut(s)	528
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	1 cut(s)	780
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	729
RsaI	GTAC	3 cut(s)	323, 547, 876
RsaNI	GTAC	3 cut(s)	322, 546, 875
RseI	CAYNNNNRTG	1 cut(s)	438
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	4 cut(s)	468, 558, 597, 651
SatI	GCNGC	2 cut(s)	88, 911
Sau3AI	GATC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	2 cut(s)	379, 400
SfaNI	GCATC	5 cut(s)	301, 633, 683, 756, 826
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
Sse9I	AATT	3 cut(s)	213, 507, 684
SseBI	AGGCCT	1 cut(s)	426
SsiI	CCGC	2 cut(s)	417, 913
SspMI	CTAG	1 cut(s)	15
StuI	AGGCCT	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	528
TaaI	ACNGT	2 cut(s)	352, 978
TaiI	ACGT	2 cut(s)	36, 116
TaqI	TCGA	1 cut(s)	64
TasI	AATT	3 cut(s)	213, 507, 684
TatI	WGTACW	1 cut(s)	321
Tru1I	TTAA	4 cut(s)	468, 558, 597, 651
Tru9I	TTAA	4 cut(s)	468, 558, 597, 651
TscAI	CASTG	1 cut(s)	664
TseFI	GTSAC	2 cut(s)	341, 443
TseI	GCWGC	2 cut(s)	87, 910
Tsp45I	GTSAC	2 cut(s)	341, 443
TspDTI	ATGAA	7 cut(s)	120, 180, 380, 428, 603, 786, 842
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	664
VneI	GTGCAC	1 cut(s)	396
XagI	CCTNNNNNAGG	1 cut(s)	527
XceI	RCATGY	1 cut(s)	881
XmiI	GTMKAC	2 cut(s)	9, 973
XspI	CTAG	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.