FvH4_1g14282

Protein tyrosine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001461
Physical Location & Seq
Reverse (-)
7934485 .. 7936499
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14282.t1

Sequence Viewer

Length: 471 bp
ATGCCATTTGATAAGTATAGAGCACCTGAGAGGAGCACAAAGGATGCTGATACCAAGGCTGATATCTACAACGCAGGGATTCTTTTGTTCGAAATGCTTCAGCCTTTTACAAGCAATTCAGACAGAGCCAGAGTTCTTCATAACTTGAGGGAGAAAAAAACCTTTCCCAACAAAGCCTGGAACGATAACCCTGTGAAGAAATGGGTGCTGCGAATGATTGATGACACACCTTCAGAGAGGCCCTCAGCAGCCTATCTTCTGCACAACTATGATTTAACTCCTCAGCTTTTGCGCATTATGCTTGGATGCTTGCCAGAACAAGGGGCTTCGAGTAGGAGACTGCGTGAGGAAACAGAGGAGAAGAGTTCGCATGGGAGAGGACTAAGGTATTGGCCGCATATGTTGACTGAATGGATAGTGGAGCAAGCGAAGGAAAATGCTTGCATGCGAAGAGCCAGGGACTTCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

157

Amino Acids

18.31

Weight (kDa)

9.14

Isoelectric Point (pI)

64.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 5 - 88 2e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 293
AciI CCGC 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 392
AcuI CTGAAG 2 cut(s) 83, 216
AfiI CCNNNNNNNGG 1 cut(s) 320
AjnI CCWGG 2 cut(s) 176, 455
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
Alw21I GWGCWC 2 cut(s) 25, 38
Alw26I GTCTC 1 cut(s) 331
AoxI GGCC 2 cut(s) 239, 392
ApeKI GCWGC 2 cut(s) 208, 248
Asp700I GAANNNNTTC 1 cut(s) 96
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 240
AsuII TTCGAA 1 cut(s) 90
Bbv12I GWGCWC 2 cut(s) 25, 38
BbvCI CCTCAGC 2 cut(s) 244, 282
BbvI GCAGC 2 cut(s) 195, 260
BciT130I CCWGG 2 cut(s) 178, 457
BcoDI GTCTC 1 cut(s) 331
BisI GCNGC 3 cut(s) 209, 249, 395
BlsI GCNGC 3 cut(s) 210, 250, 396
Bme1390I CCNGG 2 cut(s) 178, 457
BmgT120I GGNCC 1 cut(s) 240
BmrFI CCNGG 2 cut(s) 178, 457
BmsI GCATC 2 cut(s) 34, 296
BplI GAGNNNNNCTC 2 cut(s) 227, 259
Bpu10I CCTNAGC 2 cut(s) 244, 282
Bpu14I TTCGAA 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 54, 456
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 1 cut(s) 320
BseBI CCWGG 2 cut(s) 178, 457
BseDI CCNNGG 2 cut(s) 54, 456
BseGI GGATG 2 cut(s) 49, 311
BseLI CCNNNNNNNGG 1 cut(s) 320
BseMII CTCAG 3 cut(s) 18, 258, 296
BseRI GAGGAG 3 cut(s) 46, 270, 371
BseXI GCAGC 2 cut(s) 195, 260
BsgI GTGCAG 1 cut(s) 245
BshFI GGCC 2 cut(s) 241, 394
BsiHKAI GWGCWC 2 cut(s) 25, 38
BslI CCNNNNNNNGG 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 331
BsnI GGCC 2 cut(s) 241, 394
Bsp119I TTCGAA 1 cut(s) 90
Bsp1286I GDGCHC 2 cut(s) 25, 38
BspACI CCGC 1 cut(s) 395
BspANI GGCC 2 cut(s) 241, 394
BspCNI CTCAG 3 cut(s) 19, 257, 295
BspQI GCTCTTC 1 cut(s) 445
BspT104I TTCGAA 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 54, 456
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 2 cut(s) 178, 457
Bst6I CTCTTC 2 cut(s) 356, 445
BstBI TTCGAA 1 cut(s) 90
BstC8I GCNNGC 4 cut(s) 311, 426, 442, 446
BstDEI CTNAG 4 cut(s) 27, 244, 282, 383
BstF5I GGATG 2 cut(s) 49, 311
BstHHI GCGC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 331
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstNI CCWGG 2 cut(s) 178, 457
BstNSI RCATGY 1 cut(s) 448
BstSCI CCNGG 2 cut(s) 176, 455
BstV1I GCAGC 2 cut(s) 195, 260
BsuRI GGCC 2 cut(s) 241, 394
BtsCI GGATG 2 cut(s) 49, 311
Cac8I GCNNGC 4 cut(s) 311, 426, 442, 446
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 240
CviAII CATG 2 cut(s) 371, 445
DdeI CTNAG 4 cut(s) 27, 244, 282, 383
EaeI YGGCCR 1 cut(s) 392
Eam1104I CTCTTC 2 cut(s) 356, 445
EarI CTCTTC 2 cut(s) 356, 445
Eco130I CCWWGG 1 cut(s) 54
Eco32I GATATC 1 cut(s) 64
Eco57I CTGAAG 2 cut(s) 83, 216
EcoO109I RGGNCCY 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 176, 455
EcoRV GATATC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 2 cut(s) 374, 448
FaiI YATR 9 cut(s) 18, 141, 270, 299, 372, 399, 401, 446, 469
FatI CATG 2 cut(s) 370, 444
FauNDI CATATG 1 cut(s) 399
Fnu4HI GCNGC 3 cut(s) 209, 249, 395
FokI GGATG 2 cut(s) 56, 318
Fsp4HI GCNGC 3 cut(s) 209, 249, 395
FspI TGCGCA 1 cut(s) 293
GlaI GCGC 1 cut(s) 293
GluI GCNGC 3 cut(s) 209, 249, 395
HaeIII GGCC 2 cut(s) 241, 394
HhaI GCGC 1 cut(s) 294
Hin1II CATG 2 cut(s) 374, 448
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HinfI GANTC 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 2 cut(s) 121, 235
Hpy8I GTNNAC 1 cut(s) 405
HpyAV CCTTC 2 cut(s) 240, 424
HpyCH4V TGCA 2 cut(s) 262, 444
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 4 cut(s) 27, 244, 282, 383
Hsp92II CATG 2 cut(s) 374, 448
HspAI GCGC 1 cut(s) 292
LguI GCTCTTC 1 cut(s) 445
LmnI GCTCC 2 cut(s) 33, 421
LpnPI CCDG 8 cut(s) 39, 60, 142, 163, 190, 204, 327, 442
Lsp1109I GCAGC 2 cut(s) 195, 260
LweI GCATC 2 cut(s) 34, 296
MboII GAAGA 5 cut(s) 128, 208, 248, 373, 462
MhlI GDGCHC 2 cut(s) 25, 38
MluCI AATT 1 cut(s) 115
MnlI CCTC 8 cut(s) 24, 141, 231, 253, 291, 340, 349, 371
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 1 cut(s) 275
MslI CAYNNNNRTG 1 cut(s) 267
MspR9I CCNGG 2 cut(s) 178, 457
MvaI CCWGG 2 cut(s) 178, 457
MwoI GCNNNNNNNGC 1 cut(s) 298
NdeI CATATG 1 cut(s) 399
NlaIII CATG 2 cut(s) 374, 448
NsbI TGCGCA 1 cut(s) 293
NspI RCATGY 1 cut(s) 448
NspV TTCGAA 1 cut(s) 90
PaeI GCATGC 1 cut(s) 448
PciSI GCTCTTC 1 cut(s) 445
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 3 cut(s) 210, 250, 396
Psp6I CCWGG 2 cut(s) 176, 455
PspGI CCWGG 2 cut(s) 176, 455
PspPI GGNCC 1 cut(s) 240
RseI CAYNNNNRTG 1 cut(s) 267
SapI GCTCTTC 1 cut(s) 445
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 3 cut(s) 209, 249, 395
Sau96I GGNCC 1 cut(s) 240
ScrFI CCNGG 2 cut(s) 178, 457
SduI GDGCHC 2 cut(s) 25, 38
SetI ASST 5 cut(s) 28, 164, 232, 288, 389
SfaNI GCATC 2 cut(s) 34, 296
SfuI TTCGAA 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
SphI GCATGC 1 cut(s) 448
Sse9I AATT 1 cut(s) 115
SsiI CCGC 1 cut(s) 395
StyD4I CCNGG 2 cut(s) 176, 455
StyI CCWWGG 1 cut(s) 54
TaqI TCGA 2 cut(s) 90, 329
TasI AATT 1 cut(s) 115
TauI GCSGC 1 cut(s) 397
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TseI GCWGC 2 cut(s) 208, 248
TspDTI ATGAA 1 cut(s) 128
XceI RCATGY 1 cut(s) 448
XmnI GAANNNNTTC 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.