Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

14142275 .. 14146915

Gene Structure 4641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG162600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGGATGCTAAAAAAGGAACCATCACAGAGACCTTCATCATCAAGGATAATGAAGAAGAAAGTAGAAATAGAGGATGCTATTCTCAAGTTTCATCTGAAAAAGAAGCAGAAGGTACATGCCACTGCCGAAAAGCAGATTGAAGGTATGCAGCGCAAACACAGGAAGCCTAAGAATGTCAAAGGGGCTGGCGCATTCGGCGTTGTCGTTCGATGCAAGAACCTGATAGACAACCAAACTTATGCCATAAAGAAAATATCAATTGGTAACAGGGACAATACTGATGGATATGGCAACTATAGAGACCTATTAAGGGAGTCTATCATTTTAGCCACATTTGATGACCCTGCTGTTGTTCGGTATCACTCGACCTGGATGGAGTGCACTTTTGTTGGCACTACTGGAGGTGAACCTGATATTGTGGAAACCAATCCATGTCTTTACATACAACAGCAACTATGTGAGAGCACGTTGGAGCAAAAGATGAGGAGTACCGAACTTTCAAAGGAAGAATGTGCAGTCATTTTCTCACAGGTGGCACGCGGCCTAGCACACATCCACAGTCACAACATAATGCATGGTGATCTTGGCAGAGGAAATATATTCTTGAACAAGAACCAAGCAAAAATTGGAGACTTTGGACTTTCCCGGATCATCGGTGAAGGTGATGATGTAATTCATTTAGGAAACCCCCCACCTCTATACGCCGCACCTGATAAATGTGTCCATGCAAATGCGGACGTGTTCAGTCTGGGGATTCTGCTGGTGCAGATGCTTCTCAACATCAGAACAGATTCAGAAGCACTGAAGGTGTTTCCTGACCTGAAAAAAGAAGAACCAGTGTTTCCTGCCTACTGGCCTAACGGTGTGCTGAAGACTTGGGTGACAAACATGCTGAAAAAAAATCCATCAGAAAGACCATCATCATCAGATATCGTGGAGAACCTACGCAAGATAGAGGATGCTATTCAGGAGTTTCATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

328

Amino Acids

37.0

Weight (kDa)

8.97

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	62 - 314	9.6e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	62 - 316	1.2e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	543
AciI	CCGC	3 cut(s)	543, 708, 737
AclWI	GGATC	1 cut(s)	659
AcuI	CTGAAG	2 cut(s)	827, 893
AfaI	GTAC	2 cut(s)	117, 493
AfiI	CCNNNNNNNGG	1 cut(s)	313
AflIII	ACRYGT	1 cut(s)	741
AgsI	TTSAA	3 cut(s)	143, 504, 610
AjiI	CACGTC	1 cut(s)	742
AjnI	CCWGG	1 cut(s)	371
Alw21I	GWGCWC	2 cut(s)	386, 470
Alw26I	GTCTC	3 cut(s)	25, 297, 627
Alw44I	GTGCAC	1 cut(s)	382
AlwI	GGATC	1 cut(s)	659
AoxI	GGCC	2 cut(s)	544, 857
ApaLI	GTGCAC	1 cut(s)	382
ApeKI	GCWGC	1 cut(s)	151
Asp700I	GAANNNNTTC	1 cut(s)	793
AspLEI	GCGC	2 cut(s)	156, 194
AsuC2I	CCSGG	1 cut(s)	649
AsuHPI	GGTGA	5 cut(s)	419, 593, 671, 677, 895
BaeGI	GKGCMC	1 cut(s)	386
BbsI	GAAGAC	1 cut(s)	881
Bbv12I	GWGCWC	2 cut(s)	386, 470
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	5 cut(s)	31, 278, 370, 916, 928
BciT130I	CCWGG	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	649
BcoDI	GTCTC	3 cut(s)	25, 297, 627
BfaI	CTAG	1 cut(s)	548
BfmI	CTRYAG	1 cut(s)	298
BisI	GCNGC	3 cut(s)	152, 544, 708
BlsI	GCNGC	3 cut(s)	153, 545, 709
Bme1390I	CCNGG	2 cut(s)	373, 649
BmgBI	CACGTC	1 cut(s)	742
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	2 cut(s)	373, 649
BmsI	GCATC	4 cut(s)	67, 203, 762, 952
BpiI	GAAGAC	1 cut(s)	881
BpmI	CTGGAG	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	649
BsaI	GGTCTC	2 cut(s)	25, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	3 cut(s)	406, 839, 860
BseBI	CCWGG	1 cut(s)	373
BseGI	GGATG	5 cut(s)	12, 82, 381, 555, 967
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseNI	ACTGG	3 cut(s)	406, 839, 860
BseRI	GAGGAG	1 cut(s)	502
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	1 cut(s)	163
BsgI	GTGCAG	2 cut(s)	537, 788
Bsh1236I	CGCG	1 cut(s)	543
BshFI	GGCC	2 cut(s)	546, 859
BsiHKAI	GWGCWC	2 cut(s)	386, 470
BsiSI	CCGG	1 cut(s)	649
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	3 cut(s)	25, 297, 627
BsmFI	GGGAC	1 cut(s)	287
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	546, 859
Bso31I	GGTCTC	2 cut(s)	25, 297
Bsp1286I	GDGCHC	2 cut(s)	386, 470
Bsp143I	GATC	2 cut(s)	583, 651
BspACI	CCGC	3 cut(s)	543, 708, 737
BspANI	GGCC	2 cut(s)	546, 859
BspFNI	CGCG	1 cut(s)	543
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	659
BspTNI	GGTCTC	2 cut(s)	25, 297
BsrI	ACTGG	3 cut(s)	406, 839, 860
BssMI	GATC	2 cut(s)	583, 651
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	563, 866
BstC8I	GCNNGC	2 cut(s)	190, 541
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	5 cut(s)	12, 82, 381, 555, 967
BstFNI	CGCG	1 cut(s)	543
BstHHI	GCGC	2 cut(s)	156, 194
BstKTI	GATC	2 cut(s)	586, 654
BstMAI	GTCTC	3 cut(s)	25, 297, 627
BstMBI	GATC	2 cut(s)	583, 651
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNI	CCWGG	1 cut(s)	373
BstNSI	RCATGY	2 cut(s)	122, 895
BstSCI	CCNGG	2 cut(s)	371, 647
BstSFI	CTRYAG	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	386
BstUI	CGCG	1 cut(s)	543
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	881
BsuRI	GGCC	2 cut(s)	546, 859
BtrI	CACGTC	1 cut(s)	742
BtsCI	GGATG	5 cut(s)	12, 82, 381, 555, 967
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	3 cut(s)	123, 803, 846
Cac8I	GCNNGC	2 cut(s)	190, 541
CfoI	GCGC	2 cut(s)	156, 194
Csp6I	GTAC	2 cut(s)	116, 492
CviAII	CATG	5 cut(s)	119, 435, 578, 728, 892
CviJI	RGCY	5 cut(s)	169, 188, 332, 546, 859
CviKI_1	RGCY	5 cut(s)	169, 188, 332, 546, 859
CviQI	GTAC	2 cut(s)	116, 492
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	2 cut(s)	585, 653
DpnII	GATC	2 cut(s)	583, 651
Eco31I	GGTCTC	2 cut(s)	25, 297
Eco32I	GATATC	1 cut(s)	934
Eco57I	CTGAAG	2 cut(s)	827, 893
EcoRII	CCWGG	1 cut(s)	371
EcoRV	GATATC	1 cut(s)	934
EcoT22I	ATGCAT	1 cut(s)	579
FaeI	CATG	5 cut(s)	122, 438, 581, 731, 895
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	5 cut(s)	118, 434, 577, 727, 891
Fnu4HI	GCNGC	3 cut(s)	152, 544, 708
FokI	GGATG	5 cut(s)	19, 89, 388, 542, 974
Fsp4HI	GCNGC	3 cut(s)	152, 544, 708
FspBI	CTAG	1 cut(s)	548
GlaI	GCGC	2 cut(s)	155, 193
GluI	GCNGC	3 cut(s)	152, 544, 708
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	2 cut(s)	546, 859
HapII	CCGG	1 cut(s)	649
HhaI	GCGC	2 cut(s)	156, 194
Hin1II	CATG	5 cut(s)	122, 438, 581, 731, 895
Hin6I	GCGC	2 cut(s)	154, 192
HinP1I	GCGC	2 cut(s)	154, 192
HinfI	GANTC	3 cut(s)	317, 757, 794
HpaII	CCGG	1 cut(s)	649
HphI	GGTGA	5 cut(s)	419, 593, 671, 677, 895
Hpy166II	GTNNAC	2 cut(s)	384, 410
Hpy188I	TCNGA	5 cut(s)	99, 788, 799, 913, 931
Hpy188III	TCNNGA	3 cut(s)	607, 818, 971
Hpy8I	GTNNAC	2 cut(s)	384, 410
HpyAV	CCTTC	5 cut(s)	45, 106, 137, 656, 802
HpyCH4III	ACNGT	2 cut(s)	563, 866
HpyCH4IV	ACGT	2 cut(s)	470, 741
HpyCH4V	TGCA	7 cut(s)	151, 216, 384, 518, 577, 731, 769
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	2 cut(s)	470, 741
Hsp92II	CATG	5 cut(s)	122, 438, 581, 731, 895
HspAI	GCGC	2 cut(s)	154, 192
Kzo9I	GATC	2 cut(s)	583, 651
LmnI	GCTCC	1 cut(s)	475
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	4 cut(s)	67, 203, 762, 952
MaeI	CTAG	1 cut(s)	548
MaeII	ACGT	2 cut(s)	470, 741
MaeIII	GTNAC	3 cut(s)	266, 563, 883
MalI	GATC	2 cut(s)	585, 653
MboI	GATC	2 cut(s)	583, 651
MboII	GAAGA	5 cut(s)	67, 70, 521, 845, 886
MfeI	CAATTG	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	386, 470
MluCI	AATT	3 cut(s)	261, 627, 675
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	453
MnlI	CCTC	6 cut(s)	67, 398, 480, 587, 708, 952
Mph1103I	ATGCAT	1 cut(s)	579
MroXI	GAANNNNTTC	1 cut(s)	793
MseI	TTAA	2 cut(s)	311, 985
MslI	CAYNNNNRTG	1 cut(s)	732
MspI	CCGG	1 cut(s)	649
MspR9I	CCNGG	2 cut(s)	373, 649
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	373
MvnI	CGCG	1 cut(s)	543
MwoI	GCNNNNNNNGC	1 cut(s)	198
NciI	CCSGG	1 cut(s)	649
NdeII	GATC	2 cut(s)	583, 651
NlaIII	CATG	5 cut(s)	122, 438, 581, 731, 895
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	2 cut(s)	563, 883
NsiI	ATGCAT	1 cut(s)	579
NspI	RCATGY	2 cut(s)	122, 895
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	793
PfeI	GAWTC	2 cut(s)	757, 794
PfoI	TCCNGGA	1 cut(s)	647
PkrI	GCNGC	3 cut(s)	153, 545, 709
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	21
RsaI	GTAC	2 cut(s)	117, 493
RsaNI	GTAC	2 cut(s)	116, 492
RseI	CAYNNNNRTG	1 cut(s)	732
SaqAI	TTAA	2 cut(s)	311, 985
SatI	GCNGC	3 cut(s)	152, 544, 708
Sau3AI	GATC	2 cut(s)	583, 651
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	2 cut(s)	373, 649
SduI	GDGCHC	2 cut(s)	386, 470
SfaNI	GCATC	4 cut(s)	67, 203, 762, 952
SfcI	CTRYAG	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	261, 627, 675
SsiI	CCGC	3 cut(s)	543, 708, 737
SspMI	CTAG	1 cut(s)	548
StyD4I	CCNGG	2 cut(s)	371, 647
TaaI	ACNGT	2 cut(s)	563, 866
TaiI	ACGT	2 cut(s)	473, 744
TaqI	TCGA	2 cut(s)	211, 368
TasI	AATT	3 cut(s)	261, 627, 675
TauI	GCSGC	2 cut(s)	546, 710
TfiI	GAWTC	2 cut(s)	757, 794
Tru1I	TTAA	2 cut(s)	311, 985
Tru9I	TTAA	2 cut(s)	311, 985
TscAI	CASTG	3 cut(s)	130, 810, 846
TseFI	GTSAC	2 cut(s)	563, 883
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	2 cut(s)	563, 883
TspDTI	ATGAA	5 cut(s)	27, 68, 83, 668, 968
TspRI	CASTG	3 cut(s)	130, 810, 846
VneI	GTGCAC	1 cut(s)	382
XceI	RCATGY	2 cut(s)	122, 895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	626
XmnI	GAANNNNTTC	1 cut(s)	793
XspI	CTAG	1 cut(s)	548
Zsp2I	ATGCAT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.