Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Reverse (-)

34482318 .. 34483716

Gene Structure 1399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG182000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGATAACGTTGTGCGCTACTATGCGCACGTTAGAGAAACTTCTTAAGGGGAGGACACTGTCAGAAAAAGAATGTTGGGGGTTTTATAAGCAAATTTTGCTAGGATTGGAGCATATTCATAGCAAAAATATCATGCATAGTGACATCTCCCCAAGTAACATGTTCCTGTTTGAAGGGAGAATAAAAATTGGTGATTTTGGGCATGCTCGCTTCATTGGAGAAGATGATGGGATTATAAAAAAAACTGAAGCAAATATATTCTACAAGCCACCTGATAAAGAAGTGAGCTCCAAGGTTGATATCTACAGTAGTGGCCTGGTCTTGTTTGAAATGCTAAATGGCAATATGGACCCAAACAAGAAAATAAGTTCTCTGTTCAGCGTCAGAGCAGGCCAGTTTCCTCAATCTTGGACGAAGTCTTTTCTAATGGCACTCTTTGTTTATACCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

150

Amino Acids

17.12

Weight (kDa)

8.85

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	6 - 116	8.8e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	10 - 123	4.8e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	87, 236
Acc16I	TGCGCA	1 cut(s)	26
AclI	AACGTT	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	267
AflII	CTTAAG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	2 cut(s)	173, 329
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	1 cut(s)	288
AluI	AGCT	1 cut(s)	288
Alw21I	GWGCWC	1 cut(s)	290
AoxI	GGCC	2 cut(s)	313, 391
ApoI	RAATTY	1 cut(s)	93
AspLEI	GCGC	2 cut(s)	17, 27
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	290
BccI	CCATC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	317
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	304
BfrI	CTTAAG	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	317
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	394
BshFI	GGCC	2 cut(s)	315, 393
BsiHKAI	GWGCWC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	315, 393
Bsp1286I	GDGCHC	1 cut(s)	290
BspANI	GGCC	2 cut(s)	315, 393
BspLI	GGNNCC	1 cut(s)	351
BspTI	CTTAAG	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	394
BssECI	CCNNGG	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	60, 308
BstAFI	CTTAAG	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	97
BstC8I	GCNNGC	3 cut(s)	204, 208, 391
BstHHI	GCGC	2 cut(s)	17, 27
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	2 cut(s)	163, 206
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	315, 393
BtsIMutI	CAGTG	1 cut(s)	56
Cac8I	GCNNGC	3 cut(s)	204, 208, 391
CfoI	GCGC	2 cut(s)	17, 27
Cfr13I	GGNCC	1 cut(s)	349
CseI	GACGC	1 cut(s)	370
CviAII	CATG	3 cut(s)	133, 160, 203
CviJI	RGCY	4 cut(s)	268, 288, 315, 393
CviKI_1	RGCY	4 cut(s)	268, 288, 315, 393
Ecl136II	GAGCTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	290
Eco32I	GATATC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	288
Eco57I	CTGAAG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	315
EcoRV	GATATC	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	3 cut(s)	136, 163, 206
FatI	CATG	3 cut(s)	132, 159, 202
FriOI	GRGCYC	1 cut(s)	290
FspAI	RTGCGCAY	1 cut(s)	26
FspBI	CTAG	1 cut(s)	101
FspI	TGCGCA	1 cut(s)	26
GlaI	GCGC	2 cut(s)	16, 26
HaeIII	GGCC	2 cut(s)	315, 393
HgaI	GACGC	1 cut(s)	370
HhaI	GCGC	2 cut(s)	17, 27
Hin1II	CATG	3 cut(s)	136, 163, 206
Hin6I	GCGC	2 cut(s)	15, 25
HinP1I	GCGC	2 cut(s)	15, 25
HphI	GGTGA	1 cut(s)	203
Hpy188I	TCNGA	2 cut(s)	64, 386
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	2 cut(s)	60, 308
HpyCH4IV	ACGT	2 cut(s)	8, 29
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpySE526I	ACGT	2 cut(s)	8, 29
Hsp92II	CATG	3 cut(s)	136, 163, 206
HspAI	GCGC	2 cut(s)	15, 25
LmnI	GCTCC	2 cut(s)	109, 293
LpnPI	CCDG	6 cut(s)	179, 285, 302, 329, 375, 407
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	2 cut(s)	8, 29
MaeIII	GTNAC	2 cut(s)	140, 155
MboII	GAAGA	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	2 cut(s)	93, 186
MnlI	CCTC	2 cut(s)	45, 411
Mph1103I	ATGCAT	1 cut(s)	138
MseI	TTAA	1 cut(s)	45
MspCI	CTTAAG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	97
NlaIII	CATG	3 cut(s)	136, 163, 206
NlaIV	GGNNCC	1 cut(s)	351
NmuCI	GTSAC	1 cut(s)	140
NsbI	TGCGCA	1 cut(s)	26
NsiI	ATGCAT	1 cut(s)	138
NspI	RCATGY	2 cut(s)	163, 206
PaeI	GCATGC	1 cut(s)	206
PciI	ACATGT	1 cut(s)	159
PflFI	GACNNNGTC	2 cut(s)	58, 415
PscI	ACATGT	1 cut(s)	159
PsiI	TTATAA	2 cut(s)	87, 236
Psp124BI	GAGCTC	1 cut(s)	290
Psp1406I	AACGTT	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	349
PsyI	GACNNNGTC	2 cut(s)	58, 415
SacI	GAGCTC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	45
Sau96I	GGNCC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	5 cut(s)	11, 32, 274, 290, 297
SfcI	CTRYAG	1 cut(s)	304
SinI	GGWCC	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	2 cut(s)	93, 186
SspMI	CTAG	1 cut(s)	101
SstI	GAGCTC	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	60, 308
TaiI	ACGT	2 cut(s)	11, 32
TasI	AATT	2 cut(s)	93, 186
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	107, 202
TspRI	CASTG	1 cut(s)	63
Tth111I	GACNNNGTC	2 cut(s)	58, 415
Vha464I	CTTAAG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	1 cut(s)	93
XceI	RCATGY	2 cut(s)	163, 206
XspI	CTAG	1 cut(s)	101
Zsp2I	ATGCAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.