Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Reverse (-)

12867775 .. 12869732

Gene Structure 1958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGATCAAGATGCTGCTGAAGGAATTCCAGATGGCTTTGAAGTGCTTACAGAGATCAAATGTCCATCAAGTGGGAAGACGATCTACTCTAACCTAGTCTTGAGTACTGACAAGCTTATTGGCTGCAGACACCCTCTTGGACCTTGGTATTTGTCCAACTATGAGGAAATTGAAATACTCGGTTCCGGAGCATTCGGGGTTGTGGCAAGGTGCAAAAACAAGTTTGATCAAAAGCACAGTGCTATTAAGAAAATTGCAATTGGCTCAACACCTGATGATTGCTTTGAATCTATTATAAGGGAGGCACGCATTTGGTCTCTGCTTGACCACCGCAATGTAGTCAAGTACCATGGGTGCTGGGTTGAGACGGCATTTTGGGGAGGACACGAAGGTGGTTTCCTCGCTGAAGAGAAAAAGCCTTGTTTGTATCTGAAGCTGGAAGCCTGCGACGGTTCTTTAGCTGCCCAAACAATTAATGATTTGAAGAAGATCTGTGACATAGTTCAAGCTGTATTGAAGGGACTTGTTTATCTTCATTCAAAGGGAATCGTCCATGGAGATATTAGCGCAGCAAACATTTTGATTAGTGATGGAAAAGCCAAAATATGTGATTTTGAACGAGCCAGTCATGGCACTGATCTCGATCAGAAACAGGACATTAAGAAGTTTGGGTTACTTATTGTTGAAATGCTCGATCCAAGTGCATTGCCAGATGCAAGATTACGAAGCAGGTTTCCTAAAGAGTTCAAGGCATTAGCTGAACAACTTGAAGAGATGACAGCCCCCAACCCGGAGACACGACCAACCTCTGCAGAACTTCTGCGGCATAAGAAGAAGTTAATCAAAGCTATAATGGGGATAGAGCGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04138 ko04140 ko04141 ko05160 ko05162 ko05164 ko05168 ko05169 map04138 map04140 map04141 map05160 map05162 map05164 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

290

Amino Acids

32.23

Weight (kDa)

6.76

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	54 - 211	1.5e-27	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	57 - 210	9.7e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	720
AccB7I	CCANNNNNTGG	1 cut(s)	71
AccIII	TCCGGA	1 cut(s)	185
AciI	CCGC	2 cut(s)	331, 823
AclWI	GGATC	2 cut(s)	12, 689
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	3 cut(s)	39, 426, 452
AfaI	GTAC	2 cut(s)	106, 347
AfiI	CCNNNNNNNGG	2 cut(s)	71, 790
AleI	CACNNNNGTG	1 cut(s)	390
AluBI	AGCT	6 cut(s)	115, 436, 461, 509, 758, 848
AluI	AGCT	6 cut(s)	115, 436, 461, 509, 758, 848
Alw26I	GTCTC	3 cut(s)	321, 359, 788
AlwI	GGATC	2 cut(s)	12, 689
Aor13HI	TCCGGA	1 cut(s)	185
ApeKI	GCWGC	4 cut(s)	14, 123, 461, 569
ApoI	RAATTY	1 cut(s)	24
AseI	ATTAAT	1 cut(s)	474
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	569
AspS9I	GGNCC	1 cut(s)	140
AsuC2I	CCSGG	1 cut(s)	791
AvaII	GGWCC	1 cut(s)	140
BarI	GAAGNNNNNNTAC	2 cut(s)	68, 100
BbsI	GAAGAC	1 cut(s)	83
BbvI	GCAGC	3 cut(s)	110, 448, 581
BccI	CCATC	3 cut(s)	26, 73, 584
BceAI	ACGGC	1 cut(s)	384
BcgI	CGANNNNNNTGC	4 cut(s)	622, 656, 683, 717
BclI	TGATCA	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	791
BcoDI	GTCTC	3 cut(s)	321, 359, 788
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	2 cut(s)	124, 810
BfuAI	ACCTGC	1 cut(s)	720
BglII	AGATCT	1 cut(s)	489
BisI	GCNGC	5 cut(s)	15, 124, 462, 570, 824
BlsI	GCNGC	5 cut(s)	16, 125, 463, 571, 825
BmcAI	AGTACT	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	791
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	791
BmsI	GCATC	1 cut(s)	703
BpiI	GAAGAC	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	791
BsaBI	GATNNNNATC	1 cut(s)	642
BsaI	GGTCTC	1 cut(s)	321
BsaJI	CCNNGG	3 cut(s)	143, 349, 553
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 790
Bse1I	ACTGG	1 cut(s)	624
Bse3DI	GCAATG	2 cut(s)	340, 704
Bse8I	GATNNNNATC	1 cut(s)	642
BseAI	TCCGGA	1 cut(s)	185
BseDI	CCNNGG	3 cut(s)	143, 349, 553
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	2 cut(s)	71, 790
BseMI	GCAATG	2 cut(s)	340, 704
BseNI	ACTGG	1 cut(s)	624
BseXI	GCAGC	3 cut(s)	110, 448, 581
BseYI	CCCAGC	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	186, 791
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	2 cut(s)	71, 790
BsmAI	GTCTC	3 cut(s)	321, 359, 788
BsmBI	CGTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	534
BsmI	GAATGC	1 cut(s)	191
Bso31I	GGTCTC	1 cut(s)	321
Bsp13I	TCCGGA	1 cut(s)	185
Bsp143I	GATC	8 cut(s)	4, 54, 81, 226, 489, 637, 643, 694
Bsp19I	CCATGG	2 cut(s)	349, 553
BspACI	CCGC	2 cut(s)	331, 823
BspEI	TCCGGA	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	2 cut(s)	128, 814
BspMI	ACCTGC	1 cut(s)	720
BspPI	GGATC	2 cut(s)	12, 689
BspTNI	GGTCTC	1 cut(s)	321
BsrDI	GCAATG	2 cut(s)	340, 704
BsrI	ACTGG	1 cut(s)	624
BssECI	CCNNGG	3 cut(s)	143, 349, 553
BssMI	GATC	8 cut(s)	4, 54, 81, 226, 489, 637, 643, 694
BssT1I	CCWWGG	3 cut(s)	143, 349, 553
Bst4CI	ACNGT	2 cut(s)	239, 452
Bst6I	CTCTTC	2 cut(s)	402, 765
BstC8I	GCNNGC	2 cut(s)	307, 445
BstDSI	CCRYGG	2 cut(s)	349, 553
BstHHI	GCGC	1 cut(s)	569
BstKTI	GATC	8 cut(s)	7, 57, 84, 229, 492, 640, 646, 697
BstMAI	GTCTC	3 cut(s)	321, 359, 788
BstMBI	GATC	8 cut(s)	4, 54, 81, 226, 489, 637, 643, 694
BstSCI	CCNGG	1 cut(s)	789
BstSFI	CTRYAG	2 cut(s)	124, 810
BstV1I	GCAGC	3 cut(s)	110, 448, 581
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
BtgI	CCRYGG	2 cut(s)	349, 553
BtsIMutI	CAGTG	2 cut(s)	244, 633
BveI	ACCTGC	1 cut(s)	720
Cac8I	GCNNGC	2 cut(s)	307, 445
CfoI	GCGC	1 cut(s)	569
Cfr13I	GGNCC	1 cut(s)	140
CseI	GACGC	1 cut(s)	854
Csp6I	GTAC	2 cut(s)	105, 346
CviAII	CATG	3 cut(s)	350, 554, 629
CviQI	GTAC	2 cut(s)	105, 346
DpnI	GATC	8 cut(s)	6, 56, 83, 228, 491, 639, 645, 696
DpnII	GATC	8 cut(s)	4, 54, 81, 226, 489, 637, 643, 694
Eam1104I	CTCTTC	2 cut(s)	402, 765
EarI	CTCTTC	2 cut(s)	402, 765
Eco130I	CCWWGG	3 cut(s)	143, 349, 553
Eco31I	GGTCTC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	140
Eco57I	CTGAAG	3 cut(s)	39, 426, 452
EcoRI	GAATTC	1 cut(s)	24
EcoT14I	CCWWGG	3 cut(s)	143, 349, 553
ErhI	CCWWGG	3 cut(s)	143, 349, 553
Esp3I	CGTCTC	1 cut(s)	359
FaeI	CATG	3 cut(s)	353, 557, 632
FaiI	YATR	9 cut(s)	162, 296, 351, 500, 555, 607, 630, 828, 851
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	3 cut(s)	349, 553, 628
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	5 cut(s)	15, 124, 462, 570, 824
Fsp4HI	GCNGC	5 cut(s)	15, 124, 462, 570, 824
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	568
GluI	GCNGC	5 cut(s)	15, 124, 462, 570, 824
GsaI	CCCAGC	1 cut(s)	361
HapII	CCGG	2 cut(s)	186, 791
HgaI	GACGC	1 cut(s)	854
HhaI	GCGC	1 cut(s)	569
Hin1II	CATG	3 cut(s)	353, 557, 632
Hin6I	GCGC	1 cut(s)	567
HinP1I	GCGC	1 cut(s)	567
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	2 cut(s)	287, 546
HpaII	CCGG	2 cut(s)	186, 791
Hpy188I	TCNGA	2 cut(s)	432, 648
Hpy188III	TCNNGA	5 cut(s)	8, 29, 100, 186, 641
Hpy99I	CGWCG	2 cut(s)	452, 870
HpyAV	CCTTC	3 cut(s)	14, 383, 511
HpyCH4III	ACNGT	2 cut(s)	239, 452
HpyCH4V	TGCA	6 cut(s)	126, 213, 257, 704, 716, 812
Hsp92II	CATG	3 cut(s)	353, 557, 632
HspAI	GCGC	1 cut(s)	567
Kpn2I	TCCGGA	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	8 cut(s)	4, 54, 81, 226, 489, 637, 643, 694
LmnI	GCTCC	1 cut(s)	188
Lsp1109I	GCAGC	3 cut(s)	110, 448, 581
LweI	GCATC	1 cut(s)	703
MaeI	CTAG	1 cut(s)	95
MaeIII	GTNAC	2 cut(s)	494, 672
MalI	GATC	8 cut(s)	6, 56, 83, 228, 491, 639, 645, 696
MboI	GATC	8 cut(s)	4, 54, 81, 226, 489, 637, 643, 694
MboII	GAAGA	7 cut(s)	88, 419, 496, 499, 524, 782, 844
MfeI	CAATTG	1 cut(s)	258
MflI	RGATCY	1 cut(s)	489
MluCI	AATT	5 cut(s)	24, 168, 252, 258, 471
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	6 cut(s)	144, 157, 295, 374, 410, 817
MroI	TCCGGA	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	4 cut(s)	246, 474, 660, 839
MslI	CAYNNNNRTG	2 cut(s)	333, 390
MspI	CCGG	2 cut(s)	186, 791
MspR9I	CCNGG	1 cut(s)	791
MunI	CAATTG	1 cut(s)	258
Mva1269I	GAATGC	1 cut(s)	191
NciI	CCSGG	1 cut(s)	791
NcoI	CCATGG	2 cut(s)	349, 553
NdeII	GATC	8 cut(s)	4, 54, 81, 226, 489, 637, 643, 694
NlaIII	CATG	3 cut(s)	353, 557, 632
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	494
OliI	CACNNNNGTG	1 cut(s)	390
PctI	GAATGC	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	287, 546
PflMI	CCANNNNNTGG	1 cut(s)	71
PkrI	GCNGC	5 cut(s)	16, 125, 463, 571, 825
PshBI	ATTAAT	1 cut(s)	474
PsiI	TTATAA	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	140
PstI	CTGCAG	2 cut(s)	128, 814
PsuI	RGATCY	1 cut(s)	489
RsaI	GTAC	2 cut(s)	106, 347
RsaNI	GTAC	2 cut(s)	105, 346
RseI	CAYNNNNRTG	2 cut(s)	333, 390
SaqAI	TTAA	4 cut(s)	246, 474, 660, 839
SatI	GCNGC	5 cut(s)	15, 124, 462, 570, 824
Sau3AI	GATC	8 cut(s)	4, 54, 81, 226, 489, 637, 643, 694
Sau96I	GGNCC	1 cut(s)	140
ScaI	AGTACT	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	791
SfaNI	GCATC	1 cut(s)	703
SfcI	CTRYAG	2 cut(s)	124, 810
SinI	GGWCC	1 cut(s)	140
SmiMI	CAYNNNNRTG	2 cut(s)	333, 390
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	5 cut(s)	24, 168, 252, 258, 471
SsiI	CCGC	2 cut(s)	331, 823
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	789
StyI	CCWWGG	3 cut(s)	143, 349, 553
TaaI	ACNGT	2 cut(s)	239, 452
TaqI	TCGA	3 cut(s)	642, 693, 868
TasI	AATT	5 cut(s)	24, 168, 252, 258, 471
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	1 cut(s)	826
TfiI	GAWTC	2 cut(s)	287, 546
Tru1I	TTAA	4 cut(s)	246, 474, 660, 839
Tru9I	TTAA	4 cut(s)	246, 474, 660, 839
TscAI	CASTG	2 cut(s)	244, 640
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	4 cut(s)	14, 123, 461, 569
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	1 cut(s)	524
TspRI	CASTG	2 cut(s)	244, 640
Van91I	CCANNNNNTGG	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	140
VspI	ATTAAT	1 cut(s)	474
XapI	RAATTY	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	1 cut(s)	95
ZrmI	AGTACT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.