Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Reverse (-)

78706269 .. 78708783

Gene Structure 2515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00140490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAAGTCGAAAATTCACAGATTTTATGTCTCCCTGCTGAAATCAAATGTCTAGAGTCTGATGTATTAATTCACAGCTACCAAATGTCTACAGTGGATGAGAATGTATACTCTAGGTTCAGTTCCGACTACGATTTGGAAACCGAAGAATATCTTGGAAGTGGAGCAAATGGAGTGGTAGTTTGCTGCAAGAACCGGCTGGATGAAAAAACGTACGCTATAAAGAAAATCTCAGTATTCGTTGATGAGGATTTCCCATTTGATGAACTCATGAGGGAGGCTGTCATTTTATCCAAGTTCAATAACCCTGCAATTGTCCGATACCATTCGGTATGGATTGAGCCTACTTTTGTTGGCATAACTGGAGATCCTCAAATACCAACGGAAGAGCATCCAGTTGAAACAGACCAACCATGCCTATACATTCAGCAGGAGCTATGTGACTGCACGGTAGAGCAAAAGATGAAGGCTGGAACACTTACGCTGGAAGATTGTGCACACATTTTCTTGGAAACCGCAAAAGGCCTGAAACACATTCATGGTCACAATATCATGCATGGAGACATTAAGAAGGCAAATATATTCTTCAGCAATGGCCAGCTGAAAATTGGAGATTTTGGCCTCGCCCAGGAAATAGGCGATGGTACAAATGAGATTAAAACCAGACCTCCATACTCAGCACCTGATGAACTGGTTAATGCAAAAGCTGATGTGTTTAGTTTGGGTATTCTGCTGGTTGAGATGCTACTCAACAGTACTGGAGGACATAAAGCATCTGAGGTAATTCATATGCTGACAAAACGAGGAAAAGCAGAGCTTCCTGACAGCTGGCCTGATGGCCTACTAAAGACATGGGTGATGAGGATGCTAAAAAAGGAACCATCACAGCGACCTTCATCATCAAGGATAAGGAAGAAGAAAGTAGAAATAGAGGGTGCTATTCTCAAGTTTCATCTGAAAAAGAAGCAGAAGGTACATGATACTGCCGAAAAGCAGATTGAAGGTATGCAGCGCAAACACAGAAAGCCTAAGAATGTCAAAGGTAAAGTTCAAAGACACAGAAGGTATAGTCTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

359

Amino Acids

40.76

Weight (kDa)

6.92

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	47 - 306	2.6e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	47 - 305	1.7e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	89, 108, 1072
AciI	CCGC	1 cut(s)	516
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	595
AcsI	RAATTY	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	571
AfaI	GTAC	4 cut(s)	215, 646, 757, 975
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgsI	TTSAA	4 cut(s)	301, 401, 1001, 1052
AjnI	CCWGG	1 cut(s)	627
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
AluBI	AGCT	6 cut(s)	78, 436, 601, 707, 817, 828
AluI	AGCT	6 cut(s)	78, 436, 601, 707, 817, 828
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	2 cut(s)	35, 555
Alw44I	GTGCAC	1 cut(s)	495
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	5 cut(s)	523, 595, 619, 830, 838
ApaLI	GTGCAC	1 cut(s)	495
ApeKI	GCWGC	2 cut(s)	186, 1009
ApoI	RAATTY	1 cut(s)	13
AseI	ATTAAT	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	1014
AsuHPI	GGTGA	1 cut(s)	868
BaeGI	GKGCMC	1 cut(s)	499
BalI	TGGCCA	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	2 cut(s)	173, 1021
BccI	CCATC	3 cut(s)	635, 830, 889
BciT130I	CCWGG	1 cut(s)	629
BcoDI	GTCTC	2 cut(s)	35, 555
BfaI	CTAG	2 cut(s)	53, 114
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	2 cut(s)	187, 1010
BlsI	GCNGC	2 cut(s)	188, 1011
BmcAI	AGTACT	1 cut(s)	757
Bme1390I	CCNGG	1 cut(s)	629
BmiI	GGNNCC	1 cut(s)	879
BmrFI	CCNGG	1 cut(s)	629
BmsI	GCATC	4 cut(s)	400, 732, 782, 855
BpmI	CTGGAG	2 cut(s)	384, 780
BpuEI	CTTGAG	1 cut(s)	929
BsaJI	CCNNGG	1 cut(s)	627
BsaXI	ACNNNNNCTCC	4 cut(s)	165, 195, 652, 682
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	4 cut(s)	367, 395, 696, 763
Bse3DI	GCAATG	1 cut(s)	598
BseBI	CCWGG	1 cut(s)	629
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	4 cut(s)	103, 208, 391, 870
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMI	GCAATG	1 cut(s)	598
BseMII	CTCAG	3 cut(s)	246, 690, 768
BseNI	ACTGG	4 cut(s)	367, 395, 696, 763
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	2 cut(s)	173, 1021
BsgI	GTGCAG	1 cut(s)	430
BshFI	GGCC	5 cut(s)	525, 597, 621, 832, 840
BsiHKAI	GWGCWC	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	196
BsiWI	CGTACG	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	2 cut(s)	35, 555
BsnI	GGCC	5 cut(s)	525, 597, 621, 832, 840
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	1 cut(s)	516
BspANI	GGCC	5 cut(s)	525, 597, 621, 832, 840
BspCNI	CTCAG	3 cut(s)	245, 689, 769
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	879
BspPI	GGATC	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	598
BsrFI	RCCGGY	1 cut(s)	195
BsrI	ACTGG	4 cut(s)	367, 395, 696, 763
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	1 cut(s)	367
BssNAI	GTATAC	1 cut(s)	109
Bst1107I	GTATAC	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	629
Bst4CI	ACNGT	4 cut(s)	94, 451, 755, 1077
Bst6I	CTCTTC	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	599, 830
BstDEI	CTNAG	4 cut(s)	232, 676, 777, 1029
BstENI	CCTNNNNNAGG	1 cut(s)	626
BstF5I	GGATG	4 cut(s)	103, 208, 391, 870
BstHHI	GCGC	1 cut(s)	1014
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	2 cut(s)	35, 555
BstMBI	GATC	1 cut(s)	367
BstNI	CCWGG	1 cut(s)	629
BstSCI	CCNGG	1 cut(s)	627
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	2 cut(s)	173, 1021
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BstZ17I	GTATAC	1 cut(s)	109
BsuRI	GGCC	5 cut(s)	525, 597, 621, 832, 840
BtgZI	GCGATG	1 cut(s)	654
BtsCI	GGATG	4 cut(s)	103, 208, 391, 870
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	599, 830
CaiI	CAGNNNCTG	1 cut(s)	683
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	1 cut(s)	1014
Cfr10I	RCCGGY	1 cut(s)	195
Csp6I	GTAC	4 cut(s)	214, 645, 756, 974
CspCI	CAANNNNNGTGG	2 cut(s)	156, 191
CviAII	CATG	7 cut(s)	271, 414, 539, 553, 557, 852, 977
CviQI	GTAC	4 cut(s)	214, 645, 756, 974
DdeI	CTNAG	4 cut(s)	232, 676, 777, 1029
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	595
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco147I	AGGCCT	1 cut(s)	525
Eco57I	CTGAAG	1 cut(s)	571
EcoNI	CCTNNNNNAGG	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	627
EcoT22I	ATGCAT	1 cut(s)	558
FaeI	CATG	7 cut(s)	274, 417, 542, 556, 560, 855, 980
FalI	AAGNNNNNCTT	4 cut(s)	138, 170, 801, 833
FatI	CATG	7 cut(s)	270, 413, 538, 552, 556, 851, 976
FauNDI	CATATG	1 cut(s)	789
FblI	GTMKAC	3 cut(s)	89, 108, 1072
Fnu4HI	GCNGC	2 cut(s)	187, 1010
FokI	GGATG	4 cut(s)	110, 215, 378, 877
Fsp4HI	GCNGC	2 cut(s)	187, 1010
FspBI	CTAG	2 cut(s)	53, 114
GlaI	GCGC	1 cut(s)	1013
GluI	GCNGC	2 cut(s)	187, 1010
GsuI	CTGGAG	2 cut(s)	384, 780
HaeIII	GGCC	5 cut(s)	525, 597, 621, 832, 840
HapII	CCGG	1 cut(s)	196
HhaI	GCGC	1 cut(s)	1014
Hin1II	CATG	7 cut(s)	274, 417, 542, 556, 560, 855, 980
Hin6I	GCGC	1 cut(s)	1012
HinP1I	GCGC	1 cut(s)	1012
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	1 cut(s)	868
Hpy166II	GTNNAC	4 cut(s)	90, 109, 497, 1073
Hpy188I	TCNGA	5 cut(s)	61, 127, 320, 778, 957
Hpy188III	TCNNGA	3 cut(s)	53, 271, 821
Hpy8I	GTNNAC	4 cut(s)	90, 109, 497, 1073
HpyAV	CCTTC	6 cut(s)	460, 565, 903, 964, 995, 1056
HpyCH4III	ACNGT	4 cut(s)	94, 451, 755, 1077
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	7 cut(s)	189, 311, 447, 497, 556, 701, 1009
HpyF3I	CTNAG	4 cut(s)	232, 676, 777, 1029
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	7 cut(s)	274, 417, 542, 556, 560, 855, 980
HspAI	GCGC	1 cut(s)	1012
Kzo9I	GATC	1 cut(s)	367
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	2 cut(s)	164, 433
Lsp1109I	GCAGC	2 cut(s)	173, 1021
LweI	GCATC	4 cut(s)	400, 732, 782, 855
MaeI	CTAG	2 cut(s)	53, 114
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	2 cut(s)	440, 542
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	6 cut(s)	158, 398, 500, 577, 925, 928
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	499
MlsI	TGGCCA	1 cut(s)	597
MluCI	AATT	5 cut(s)	13, 69, 312, 606, 783
MluNI	TGGCCA	1 cut(s)	597
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	150
Mox20I	TGGCCA	1 cut(s)	597
Mph1103I	ATGCAT	1 cut(s)	558
MscI	TGGCCA	1 cut(s)	597
MseI	TTAA	4 cut(s)	68, 567, 657, 696
MslI	CAYNNNNRTG	1 cut(s)	537
Msp20I	TGGCCA	1 cut(s)	597
MspA1I	CMGCKG	2 cut(s)	601, 828
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	629
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	629
NdeI	CATATG	1 cut(s)	789
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	7 cut(s)	274, 417, 542, 556, 560, 855, 980
NlaIV	GGNNCC	1 cut(s)	879
NmuCI	GTSAC	2 cut(s)	440, 542
NsiI	ATGCAT	1 cut(s)	558
PagI	TCATGA	1 cut(s)	270
PceI	AGGCCT	1 cut(s)	525
PciSI	GCTCTTC	1 cut(s)	381
Pfl23II	CGTACG	1 cut(s)	213
PkrI	GCNGC	2 cut(s)	188, 1011
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PshBI	ATTAAT	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	627
PspLI	CGTACG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	879
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	367
PvuII	CAGCTG	2 cut(s)	601, 828
RsaI	GTAC	4 cut(s)	215, 646, 757, 975
RsaNI	GTAC	4 cut(s)	214, 645, 756, 974
RseI	CAYNNNNRTG	1 cut(s)	537
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	4 cut(s)	68, 567, 657, 696
SatI	GCNGC	2 cut(s)	187, 1010
Sau3AI	GATC	1 cut(s)	367
ScaI	AGTACT	1 cut(s)	757
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	629
SduI	GDGCHC	1 cut(s)	499
SfaNI	GCATC	4 cut(s)	400, 732, 782, 855
SfcI	CTRYAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	537
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
Sse9I	AATT	5 cut(s)	13, 69, 312, 606, 783
SseBI	AGGCCT	1 cut(s)	525
SsiI	CCGC	1 cut(s)	516
SspMI	CTAG	2 cut(s)	53, 114
StuI	AGGCCT	1 cut(s)	525
StyD4I	CCNGG	1 cut(s)	627
TaaI	ACNGT	4 cut(s)	94, 451, 755, 1077
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	9
TasI	AATT	5 cut(s)	13, 69, 312, 606, 783
TatI	WGTACW	1 cut(s)	755
Tru1I	TTAA	4 cut(s)	68, 567, 657, 696
Tru9I	TTAA	4 cut(s)	68, 567, 657, 696
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	2 cut(s)	440, 542
TseI	GCWGC	2 cut(s)	186, 1009
Tsp45I	GTSAC	2 cut(s)	440, 542
TspDTI	ATGAA	8 cut(s)	219, 279, 479, 527, 702, 776, 885, 941
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	99
VneI	GTGCAC	1 cut(s)	495
VspI	ATTAAT	1 cut(s)	68
XagI	CCTNNNNNAGG	1 cut(s)	626
XapI	RAATTY	1 cut(s)	13
XbaI	TCTAGA	1 cut(s)	52
XcmI	CCANNNNNNNNNTGG	1 cut(s)	605
XmiI	GTMKAC	3 cut(s)	89, 108, 1072
XspI	CTAG	2 cut(s)	53, 114
ZrmI	AGTACT	1 cut(s)	757
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.