Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

14240803 .. 14247002

Gene Structure 6200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG163000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGCTACTCAACAGTACTGGAGGACATAAAGCATCTGAGGTAAATCGTATGCTGATAAGACGAGGAAAAGTGGAGCTTCCTGACAGCTGGCCTCATGGCTTACTAAAGACATGGGTGATGAGGATGCTAAAAAAGGAACCATCACAGAGACCTTCATCATCAAGGATAAGGAACAAGAGAGTAGAAATAGAGGGTGCTATTCTCAAGTTTCGTCTAAAAAAGAAACAGAAGGTACATGCTACTGCAGAAAAGCAGATTGAAGGTATGCAGCGCAAACAGAATGTCAAAGATGTGCCGCCGGGAATTATATGTCCTGACACTGGAGTCACTATCCAGACCTACCAGGTGTCTAATGTTGATGACAGAACCTACTCCAAGTTTAGCTCTGAGTATGATGTGGCAGCAGAAGAGTTTATTGGGGCTGGCGCATTCGGCGTTGTCGTTCGATGCAAGAACCTGATAGACAACCAAACTTATGCCATAAAGAAAATATCAATTGGTAACAGGGACAATACTGATGGATATGGCAACTATAGAGACCTATTAAGGGAGTCTATCATTTTAGCCACATTTGATGACCCTGCTGTTGTTCGGTATCACTCGACCTGGATGGAGTGCACTTTTGTTGGCACTACTGGAGGTGAACCTGATATTGTGGAAACCAATCCATGTCTTTACATACAACAGCAACTATGTGAGAGCACGTTGGAGCAAAAGATGAGGAGTACCGAACTTTCAAAGGAAGAATGTGCAGTCATTTTCTCACAGGTGGCACGCGGCCTAGCACACATCCACAGTCACAACATAATGCATGGTGATCTTGGCAGAGGAAATATATTCTTGAACAAGAACCAAGCAAAAATTGGAGACTTTGGACTTTCCCGGATCATAGGTGAAGGTGATGATGTAATTCATTTAGGAGATCCCCCACCTCTATACGCCGCAGCTGATAAATGTGTCCATGCAAATGCGGACGTGTTCAGTCTGGGGATTCTGCTGGTGCAGATGCTTCTCAACATCAGAACAGATTCAGAAGCACTGAAGGTGTTTCCTGACCTGAAAAAAGAAGAACCAGTGTTTCCTGCCTACTGGCCTAACGGTGTGCTGAAGACTTGGGTGACAAACATGCTGAAAAAAAATCCATCAGAAAGACCATCATCATCAGATATCGTGGAGAACCTACGCAAGATAGAGGATGCTATTCAGGAGTTTCATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

406

Amino Acids

45.62

Weight (kDa)

8.06

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	135 - 394	6.3e-20	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	136 - 392	1.5e-32	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	323
AccII	CGCG	1 cut(s)	777
AciI	CCGC	4 cut(s)	296, 777, 942, 971
AclWI	GGATC	2 cut(s)	893, 917
AcuI	CTGAAG	2 cut(s)	1061, 1127
AfaI	GTAC	3 cut(s)	16, 234, 727
AfiI	CCNNNNNNNGG	2 cut(s)	320, 547
AflIII	ACRYGT	1 cut(s)	975
AgsI	TTSAA	3 cut(s)	260, 738, 844
AjiI	CACGTC	1 cut(s)	976
AjnI	CCWGG	2 cut(s)	342, 605
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	4 cut(s)	76, 87, 384, 947
AluI	AGCT	4 cut(s)	76, 87, 384, 947
Alw21I	GWGCWC	2 cut(s)	620, 704
Alw26I	GTCTC	3 cut(s)	142, 531, 861
Alw44I	GTGCAC	1 cut(s)	616
AlwI	GGATC	2 cut(s)	893, 917
AoxI	GGCC	3 cut(s)	89, 778, 1091
ApaLI	GTGCAC	1 cut(s)	616
ApeKI	GCWGC	3 cut(s)	268, 401, 944
ArsI	GACNNNNNNTTYG	2 cut(s)	267, 299
Asp700I	GAANNNNTTC	1 cut(s)	1027
AspLEI	GCGC	2 cut(s)	273, 428
AsuC2I	CCSGG	2 cut(s)	300, 883
AsuHPI	GGTGA	6 cut(s)	127, 653, 827, 905, 911, 1129
BaeGI	GKGCMC	1 cut(s)	620
BbsI	GAAGAC	1 cut(s)	1115
Bbv12I	GWGCWC	2 cut(s)	620, 704
BbvI	GCAGC	3 cut(s)	280, 413, 956
BccI	CCATC	5 cut(s)	148, 512, 604, 1150, 1162
BciT130I	CCWGG	2 cut(s)	344, 607
BcnI	CCSGG	2 cut(s)	300, 883
BcoDI	GTCTC	3 cut(s)	142, 531, 861
BfaI	CTAG	1 cut(s)	782
BfmI	CTRYAG	2 cut(s)	243, 532
BisI	GCNGC	6 cut(s)	269, 296, 402, 778, 942, 945
BlsI	GCNGC	6 cut(s)	270, 297, 403, 779, 943, 946
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	4 cut(s)	300, 344, 607, 883
BmgBI	CACGTC	1 cut(s)	976
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	4 cut(s)	300, 344, 607, 883
BmsI	GCATC	5 cut(s)	41, 114, 437, 996, 1186
BpiI	GAAGAC	1 cut(s)	1115
BpmI	CTGGAG	3 cut(s)	39, 342, 657
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	2 cut(s)	300, 883
BsaI	GGTCTC	2 cut(s)	142, 531
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 547
Bse1I	ACTGG	5 cut(s)	22, 325, 640, 1073, 1094
BseBI	CCWGG	2 cut(s)	344, 607
BseGI	GGATG	4 cut(s)	129, 615, 789, 1201
BseLI	CCNNNNNNNGG	2 cut(s)	320, 547
BseMII	CTCAG	2 cut(s)	27, 378
BseNI	ACTGG	5 cut(s)	22, 325, 640, 1073, 1094
BseRI	GAGGAG	1 cut(s)	736
BseSI	GKGCMC	1 cut(s)	620
BseXI	GCAGC	3 cut(s)	280, 413, 956
BsgI	GTGCAG	2 cut(s)	771, 1022
Bsh1236I	CGCG	1 cut(s)	777
BshFI	GGCC	3 cut(s)	91, 780, 1093
BsiHKAI	GWGCWC	2 cut(s)	620, 704
BsiSI	CCGG	2 cut(s)	299, 883
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	2 cut(s)	320, 547
BsmAI	GTCTC	3 cut(s)	142, 531, 861
BsmFI	GGGAC	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	3 cut(s)	91, 780, 1093
Bso31I	GGTCTC	2 cut(s)	142, 531
Bsp1286I	GDGCHC	2 cut(s)	620, 704
Bsp143I	GATC	3 cut(s)	817, 885, 922
BspACI	CCGC	4 cut(s)	296, 777, 942, 971
BspANI	GGCC	3 cut(s)	91, 780, 1093
BspCNI	CTCAG	2 cut(s)	28, 379
BspFNI	CGCG	1 cut(s)	777
BspLI	GGNNCC	1 cut(s)	138
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	2 cut(s)	893, 917
BspTNI	GGTCTC	2 cut(s)	142, 531
BsrI	ACTGG	5 cut(s)	22, 325, 640, 1073, 1094
BssMI	GATC	3 cut(s)	817, 885, 922
Bst2UI	CCWGG	2 cut(s)	344, 607
Bst4CI	ACNGT	3 cut(s)	14, 797, 1100
Bst6I	CTCTTC	1 cut(s)	402
BstC8I	GCNNGC	3 cut(s)	89, 424, 775
BstDEI	CTNAG	2 cut(s)	36, 387
BstF5I	GGATG	4 cut(s)	129, 615, 789, 1201
BstFNI	CGCG	1 cut(s)	777
BstHHI	GCGC	2 cut(s)	273, 428
BstKTI	GATC	3 cut(s)	820, 888, 925
BstMAI	GTCTC	3 cut(s)	142, 531, 861
BstMBI	GATC	3 cut(s)	817, 885, 922
BstMWI	GCNNNNNNNGC	1 cut(s)	432
BstNI	CCWGG	2 cut(s)	344, 607
BstNSI	RCATGY	2 cut(s)	239, 1129
BstSCI	CCNGG	4 cut(s)	298, 342, 605, 881
BstSFI	CTRYAG	2 cut(s)	243, 532
BstSLI	GKGCMC	1 cut(s)	620
BstUI	CGCG	1 cut(s)	777
BstV1I	GCAGC	3 cut(s)	280, 413, 956
BstV2I	GAAGAC	1 cut(s)	1115
BstX2I	RGATCY	1 cut(s)	922
BstYI	RGATCY	1 cut(s)	922
BsuRI	GGCC	3 cut(s)	91, 780, 1093
BtrI	CACGTC	1 cut(s)	976
BtsCI	GGATG	4 cut(s)	129, 615, 789, 1201
BtsIMutI	CAGTG	3 cut(s)	318, 1037, 1080
Cac8I	GCNNGC	3 cut(s)	89, 424, 775
CfoI	GCGC	2 cut(s)	273, 428
CsiI	ACCWGGT	1 cut(s)	342
Csp6I	GTAC	3 cut(s)	15, 233, 726
CviAII	CATG	7 cut(s)	95, 111, 236, 669, 812, 962, 1126
CviQI	GTAC	3 cut(s)	15, 233, 726
DdeI	CTNAG	2 cut(s)	36, 387
DpnI	GATC	3 cut(s)	819, 887, 924
DpnII	GATC	3 cut(s)	817, 885, 922
DrdI	GACNNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco31I	GGTCTC	2 cut(s)	142, 531
Eco32I	GATATC	1 cut(s)	1168
Eco57I	CTGAAG	2 cut(s)	1061, 1127
EcoRII	CCWGG	2 cut(s)	342, 605
EcoRV	GATATC	1 cut(s)	1168
EcoT22I	ATGCAT	1 cut(s)	813
FaeI	CATG	7 cut(s)	98, 114, 239, 672, 815, 965, 1129
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	7 cut(s)	94, 110, 235, 668, 811, 961, 1125
Fnu4HI	GCNGC	6 cut(s)	269, 296, 402, 778, 942, 945
FokI	GGATG	4 cut(s)	136, 622, 776, 1208
Fsp4HI	GCNGC	6 cut(s)	269, 296, 402, 778, 942, 945
FspBI	CTAG	1 cut(s)	782
GlaI	GCGC	2 cut(s)	272, 427
GluI	GCNGC	6 cut(s)	269, 296, 402, 778, 942, 945
GsuI	CTGGAG	3 cut(s)	39, 342, 657
HaeIII	GGCC	3 cut(s)	91, 780, 1093
HapII	CCGG	2 cut(s)	299, 883
HhaI	GCGC	2 cut(s)	273, 428
Hin1II	CATG	7 cut(s)	98, 114, 239, 672, 815, 965, 1129
Hin6I	GCGC	2 cut(s)	271, 426
HinP1I	GCGC	2 cut(s)	271, 426
HinfI	GANTC	4 cut(s)	324, 551, 991, 1028
HpaII	CCGG	2 cut(s)	299, 883
HphI	GGTGA	6 cut(s)	127, 653, 827, 905, 911, 1129
Hpy166II	GTNNAC	2 cut(s)	618, 644
Hpy188I	TCNGA	6 cut(s)	37, 388, 1022, 1033, 1147, 1165
Hpy188III	TCNNGA	6 cut(s)	80, 314, 334, 841, 1052, 1205
Hpy8I	GTNNAC	2 cut(s)	618, 644
HpyAV	CCTTC	5 cut(s)	162, 223, 254, 890, 1036
HpyCH4III	ACNGT	3 cut(s)	14, 797, 1100
HpyCH4IV	ACGT	2 cut(s)	704, 975
HpyCH4V	TGCA	8 cut(s)	245, 268, 450, 618, 752, 811, 965, 1003
HpyF10VI	GCNNNNNNNGC	1 cut(s)	432
HpyF3I	CTNAG	2 cut(s)	36, 387
HpySE526I	ACGT	2 cut(s)	704, 975
Hsp92II	CATG	7 cut(s)	98, 114, 239, 672, 815, 965, 1129
HspAI	GCGC	2 cut(s)	271, 426
Kzo9I	GATC	3 cut(s)	817, 885, 922
LmnI	GCTCC	2 cut(s)	73, 709
Lsp1109I	GCAGC	3 cut(s)	280, 413, 956
LweI	GCATC	5 cut(s)	41, 114, 437, 996, 1186
MabI	ACCWGGT	1 cut(s)	342
MaeI	CTAG	1 cut(s)	782
MaeII	ACGT	2 cut(s)	704, 975
MaeIII	GTNAC	4 cut(s)	325, 500, 797, 1117
MalI	GATC	3 cut(s)	819, 887, 924
MboI	GATC	3 cut(s)	817, 885, 922
MboII	GAAGA	4 cut(s)	419, 755, 1079, 1120
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	1 cut(s)	922
MhlI	GDGCHC	2 cut(s)	620, 704
MluCI	AATT	4 cut(s)	303, 495, 861, 909
MlyI	GAGTC	2 cut(s)	333, 560
MmeI	TCCRAC	1 cut(s)	687
Mph1103I	ATGCAT	1 cut(s)	813
MroXI	GAANNNNTTC	1 cut(s)	1027
MseI	TTAA	2 cut(s)	545, 1219
MslI	CAYNNNNRTG	1 cut(s)	966
MspA1I	CMGCKG	2 cut(s)	87, 947
MspI	CCGG	2 cut(s)	299, 883
MspR9I	CCNGG	4 cut(s)	300, 344, 607, 883
MunI	CAATTG	1 cut(s)	495
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	2 cut(s)	344, 607
MvnI	CGCG	1 cut(s)	777
MwoI	GCNNNNNNNGC	1 cut(s)	432
NciI	CCSGG	2 cut(s)	300, 883
NdeII	GATC	3 cut(s)	817, 885, 922
NlaIII	CATG	7 cut(s)	98, 114, 239, 672, 815, 965, 1129
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	3 cut(s)	325, 797, 1117
NsiI	ATGCAT	1 cut(s)	813
NspI	RCATGY	2 cut(s)	239, 1129
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PctI	GAATGC	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	1027
PfeI	GAWTC	2 cut(s)	991, 1028
PfoI	TCCNGGA	1 cut(s)	881
PkrI	GCNGC	6 cut(s)	270, 297, 403, 779, 943, 946
PleI	GAGTC	2 cut(s)	332, 559
PpsI	GAGTC	2 cut(s)	332, 559
Psp6I	CCWGG	2 cut(s)	342, 605
PspGI	CCWGG	2 cut(s)	342, 605
PspN4I	GGNNCC	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	922
PvuII	CAGCTG	2 cut(s)	87, 947
RsaI	GTAC	3 cut(s)	16, 234, 727
RsaNI	GTAC	3 cut(s)	15, 233, 726
RseI	CAYNNNNRTG	1 cut(s)	966
SaqAI	TTAA	2 cut(s)	545, 1219
SatI	GCNGC	6 cut(s)	269, 296, 402, 778, 942, 945
Sau3AI	GATC	3 cut(s)	817, 885, 922
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	2 cut(s)	333, 560
ScrFI	CCNGG	4 cut(s)	300, 344, 607, 883
SduI	GDGCHC	2 cut(s)	620, 704
SexAI	ACCWGGT	1 cut(s)	342
SfaNI	GCATC	5 cut(s)	41, 114, 437, 996, 1186
SfcI	CTRYAG	2 cut(s)	243, 532
SmiMI	CAYNNNNRTG	1 cut(s)	966
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	4 cut(s)	303, 495, 861, 909
SsiI	CCGC	4 cut(s)	296, 777, 942, 971
SspMI	CTAG	1 cut(s)	782
StyD4I	CCNGG	4 cut(s)	298, 342, 605, 881
TaaI	ACNGT	3 cut(s)	14, 797, 1100
TaiI	ACGT	2 cut(s)	707, 978
TaqI	TCGA	2 cut(s)	445, 602
TasI	AATT	4 cut(s)	303, 495, 861, 909
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	3 cut(s)	298, 780, 944
TfiI	GAWTC	2 cut(s)	991, 1028
Tru1I	TTAA	2 cut(s)	545, 1219
Tru9I	TTAA	2 cut(s)	545, 1219
TscAI	CASTG	3 cut(s)	325, 1044, 1080
TseFI	GTSAC	3 cut(s)	325, 797, 1117
TseI	GCWGC	3 cut(s)	268, 401, 944
Tsp45I	GTSAC	3 cut(s)	325, 797, 1117
TspDTI	ATGAA	3 cut(s)	144, 902, 1202
TspRI	CASTG	3 cut(s)	325, 1044, 1080
VneI	GTGCAC	1 cut(s)	616
XceI	RCATGY	2 cut(s)	239, 1129
XcmI	CCANNNNNNNNNTGG	1 cut(s)	860
XmnI	GAANNNNTTC	1 cut(s)	1027
XspI	CTAG	1 cut(s)	782
ZrmI	AGTACT	1 cut(s)	16
Zsp2I	ATGCAT	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.