Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

13949994 .. 13952553

Gene Structure 2560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47690

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTCTACAGTGGATGAGAATGTATACTCTAGGTTCAGTTCCGACTACGATTTGGACACCGAAGAATATCTTGGAAGTGGAGCAAATGGAGTTGTAGTTTGCTGCAAGAACCGGTTGGATGAAAAAACGTATGCTATAAAGAAAATCTCAGTATTCGTTGATGAGGATTTCCCATTTGATGAACTCATGAGGGAGGCTGTCATTTTATCCAAGTTCAATAACCCTGCAATTGTCCGATACCATTCGGTATGGATTGAACCTACTTTTGTTGGCATAACTGGAGATCCTCAAATACCAACGGAAGAGCATCCAGTTGAGACAGACCAACCATGCCTGTACATTCAGCAGGAGCTATGTGACTGCACGGTAGAGCAAAAGATGAAGGCTGGAGCACTTACGCCGGAAGAATGTGCACACATTTTCTTGGAAACCGCAAAAGGCCTGAAACACATTCATGGTCACAATATCATGCATGGAGACATTAAGAAGGCAAATATATTCTTCAGCAACGGCCTGCTGAAAATTGGAGATTTTGGCCTCGCCCAGGAAATAGGCGATGGTACAAATGAGATTAAAACCAAACCTCCATACTCAGCACCTGATGAACTGGTTAATGCAAAAGCTGATGTGTTTAGTTTGGGTATTCTGCTGGTTGAGATGCTACTTAACAGTACTGGAGGACATAAAGCATCTGAGGTAATTCGTATGCTGACAAAACGAGGAAAAGCAGAGCTTCCTGACAGCTGGCCTGATGGCTTACTAAAGACATGGGTGATGAGGATGCTAAAAAAGGAACCATCACAGAGACCTTCATCATCAAGGATAATGAAGAAGAAAGTAGAAATAGAGGATGCTATTCTCAAGTTTCATCTGAAAAAGAAGCAGAAGGTACATGCCACTGCCGAAAAGCAGATTGAAGGTATGCAGCACAAACACAGGAAGCCTAAGAATGTCAAAGGTAAAGTTCAAAGACACAGAAGGCATAGTCTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

331

Amino Acids

37.45

Weight (kDa)

8.1

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	20 - 279	1.3e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	20 - 277	7.3e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	5, 24, 988
AciI	CCGC	1 cut(s)	432
AclWI	GGATC	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	487
AfaI	GTAC	4 cut(s)	338, 562, 673, 891
AfiI	CCNNNNNNNGG	1 cut(s)	544
AgeI	ACCGGT	1 cut(s)	111
AgsI	TTSAA	4 cut(s)	217, 257, 917, 968
AjnI	CCWGG	1 cut(s)	543
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	4 cut(s)	352, 623, 733, 744
AluI	AGCT	4 cut(s)	352, 623, 733, 744
Alw21I	GWGCWC	2 cut(s)	394, 415
Alw26I	GTCTC	3 cut(s)	311, 471, 799
Alw44I	GTGCAC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	278
AlwNI	CAGNNNCTG	1 cut(s)	599
AoxI	GGCC	4 cut(s)	439, 511, 535, 746
ApaLI	GTGCAC	1 cut(s)	411
ApeKI	GCWGC	2 cut(s)	102, 925
AsiGI	ACCGGT	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	784
BaeGI	GKGCMC	1 cut(s)	415
Bbv12I	GWGCWC	2 cut(s)	394, 415
BbvI	GCAGC	2 cut(s)	89, 937
BccI	CCATC	3 cut(s)	551, 746, 805
BceAI	ACGGC	1 cut(s)	526
BciT130I	CCWGG	1 cut(s)	545
BcoDI	GTCTC	3 cut(s)	311, 471, 799
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	2 cut(s)	103, 926
BlsI	GCNGC	2 cut(s)	104, 927
BmcAI	AGTACT	1 cut(s)	673
Bme1390I	CCNGG	1 cut(s)	545
BmiI	GGNNCC	1 cut(s)	795
BmrFI	CCNGG	1 cut(s)	545
BmsI	GCATC	5 cut(s)	316, 648, 698, 771, 841
BpmI	CTGGAG	3 cut(s)	300, 408, 696
BpuEI	CTTGAG	1 cut(s)	845
BsaI	GGTCTC	1 cut(s)	799
BsaJI	CCNNGG	1 cut(s)	543
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 568, 598
Bsc4I	CCNNNNNNNGG	1 cut(s)	544
Bse118I	RCCGGY	1 cut(s)	111
Bse1I	ACTGG	4 cut(s)	283, 311, 612, 679
BseBI	CCWGG	1 cut(s)	545
BseDI	CCNNGG	1 cut(s)	543
BseGI	GGATG	5 cut(s)	19, 124, 307, 786, 856
BseLI	CCNNNNNNNGG	1 cut(s)	544
BseMII	CTCAG	3 cut(s)	162, 606, 684
BseNI	ACTGG	4 cut(s)	283, 311, 612, 679
BseSI	GKGCMC	1 cut(s)	415
BseXI	GCAGC	2 cut(s)	89, 937
BsgI	GTGCAG	1 cut(s)	346
BshFI	GGCC	4 cut(s)	441, 513, 537, 748
BshTI	ACCGGT	1 cut(s)	111
BsiHKAI	GWGCWC	2 cut(s)	394, 415
BsiSI	CCGG	2 cut(s)	112, 401
BslI	CCNNNNNNNGG	1 cut(s)	544
BsmAI	GTCTC	3 cut(s)	311, 471, 799
BsnI	GGCC	4 cut(s)	441, 513, 537, 748
Bso31I	GGTCTC	1 cut(s)	799
Bsp1286I	GDGCHC	2 cut(s)	394, 415
Bsp1407I	TGTACA	1 cut(s)	336
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	1 cut(s)	432
BspANI	GGCC	4 cut(s)	441, 513, 537, 748
BspCNI	CTCAG	3 cut(s)	161, 605, 685
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	795
BspPI	GGATC	1 cut(s)	278
BspQI	GCTCTTC	1 cut(s)	297
BspTNI	GGTCTC	1 cut(s)	799
BsrFI	RCCGGY	1 cut(s)	111
BsrGI	TGTACA	1 cut(s)	336
BsrI	ACTGG	4 cut(s)	283, 311, 612, 679
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	543
BssMI	GATC	1 cut(s)	283
BssNAI	GTATAC	1 cut(s)	25
Bst1107I	GTATAC	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	545
Bst4CI	ACNGT	4 cut(s)	10, 367, 671, 993
Bst6I	CTCTTC	1 cut(s)	297
BstAUI	TGTACA	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	515, 746
BstDEI	CTNAG	4 cut(s)	148, 592, 693, 945
BstENI	CCTNNNNNAGG	1 cut(s)	542
BstF5I	GGATG	5 cut(s)	19, 124, 307, 786, 856
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	3 cut(s)	311, 471, 799
BstMBI	GATC	1 cut(s)	283
BstNI	CCWGG	1 cut(s)	545
BstNSI	RCATGY	1 cut(s)	896
BstSCI	CCNGG	1 cut(s)	543
BstSFI	CTRYAG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	415
BstV1I	GCAGC	2 cut(s)	89, 937
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BstZ17I	GTATAC	1 cut(s)	25
BsuRI	GGCC	4 cut(s)	441, 513, 537, 748
BtgZI	GCGATG	1 cut(s)	570
BtsCI	GGATG	5 cut(s)	19, 124, 307, 786, 856
BtsI	GCAGTG	1 cut(s)	897
BtsIMutI	CAGTG	2 cut(s)	15, 897
Cac8I	GCNNGC	2 cut(s)	515, 746
CaiI	CAGNNNCTG	1 cut(s)	599
CciI	TCATGA	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	111
Csp6I	GTAC	4 cut(s)	337, 561, 672, 890
CspAI	ACCGGT	1 cut(s)	111
CviAII	CATG	7 cut(s)	187, 330, 455, 469, 473, 768, 893
CviQI	GTAC	4 cut(s)	337, 561, 672, 890
DdeI	CTNAG	4 cut(s)	148, 592, 693, 945
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco147I	AGGCCT	1 cut(s)	441
Eco31I	GGTCTC	1 cut(s)	799
Eco57I	CTGAAG	1 cut(s)	487
EcoNI	CCTNNNNNAGG	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	543
EcoT22I	ATGCAT	1 cut(s)	474
FaeI	CATG	7 cut(s)	190, 333, 458, 472, 476, 771, 896
FalI	AAGNNNNNCTT	4 cut(s)	54, 86, 717, 749
FatI	CATG	7 cut(s)	186, 329, 454, 468, 472, 767, 892
FblI	GTMKAC	3 cut(s)	5, 24, 988
Fnu4HI	GCNGC	2 cut(s)	103, 926
FokI	GGATG	5 cut(s)	26, 131, 294, 793, 863
Fsp4HI	GCNGC	2 cut(s)	103, 926
FspBI	CTAG	1 cut(s)	30
GluI	GCNGC	2 cut(s)	103, 926
GsuI	CTGGAG	3 cut(s)	300, 408, 696
HaeIII	GGCC	4 cut(s)	441, 513, 537, 748
HapII	CCGG	2 cut(s)	112, 401
Hin1II	CATG	7 cut(s)	190, 333, 458, 472, 476, 771, 896
HpaII	CCGG	2 cut(s)	112, 401
HphI	GGTGA	1 cut(s)	784
Hpy166II	GTNNAC	4 cut(s)	6, 25, 413, 989
Hpy188I	TCNGA	4 cut(s)	43, 236, 694, 873
Hpy188III	TCNNGA	2 cut(s)	187, 737
Hpy8I	GTNNAC	4 cut(s)	6, 25, 413, 989
HpyAV	CCTTC	6 cut(s)	376, 481, 819, 880, 911, 972
HpyCH4III	ACNGT	4 cut(s)	10, 367, 671, 993
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	7 cut(s)	105, 227, 363, 413, 472, 617, 925
HpyF3I	CTNAG	4 cut(s)	148, 592, 693, 945
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	7 cut(s)	190, 333, 458, 472, 476, 771, 896
Kzo9I	GATC	1 cut(s)	283
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	3 cut(s)	80, 349, 389
Lsp1109I	GCAGC	2 cut(s)	89, 937
LweI	GCATC	5 cut(s)	316, 648, 698, 771, 841
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	2 cut(s)	356, 458
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	6 cut(s)	74, 314, 416, 493, 841, 844
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	2 cut(s)	394, 415
MluCI	AATT	3 cut(s)	228, 522, 699
MmeI	TCCRAC	2 cut(s)	66, 96
Mph1103I	ATGCAT	1 cut(s)	474
MseI	TTAA	4 cut(s)	483, 573, 612, 666
MslI	CAYNNNNRTG	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	744
MspI	CCGG	2 cut(s)	112, 401
MspR9I	CCNGG	1 cut(s)	545
MunI	CAATTG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	545
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	7 cut(s)	190, 333, 458, 472, 476, 771, 896
NlaIV	GGNNCC	1 cut(s)	795
NmuCI	GTSAC	2 cut(s)	356, 458
NsiI	ATGCAT	1 cut(s)	474
NspI	RCATGY	1 cut(s)	896
PagI	TCATGA	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	441
PciSI	GCTCTTC	1 cut(s)	297
PinAI	ACCGGT	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	104, 927
Psp6I	CCWGG	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	543
PspN4I	GGNNCC	1 cut(s)	795
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	744
RsaI	GTAC	4 cut(s)	338, 562, 673, 891
RsaNI	GTAC	4 cut(s)	337, 561, 672, 890
RseI	CAYNNNNRTG	1 cut(s)	453
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	4 cut(s)	483, 573, 612, 666
SatI	GCNGC	2 cut(s)	103, 926
Sau3AI	GATC	1 cut(s)	283
ScaI	AGTACT	1 cut(s)	673
ScrFI	CCNGG	1 cut(s)	545
SduI	GDGCHC	2 cut(s)	394, 415
SfaNI	GCATC	5 cut(s)	316, 648, 698, 771, 841
SfcI	CTRYAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	860
SmoI	CTYRAG	1 cut(s)	860
Sse9I	AATT	3 cut(s)	228, 522, 699
SseBI	AGGCCT	1 cut(s)	441
SsiI	CCGC	1 cut(s)	432
SspMI	CTAG	1 cut(s)	30
StuI	AGGCCT	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	543
TaaI	ACNGT	4 cut(s)	10, 367, 671, 993
TaiI	ACGT	1 cut(s)	131
TasI	AATT	3 cut(s)	228, 522, 699
TatI	WGTACW	2 cut(s)	336, 671
Tru1I	TTAA	4 cut(s)	483, 573, 612, 666
Tru9I	TTAA	4 cut(s)	483, 573, 612, 666
TscAI	CASTG	2 cut(s)	15, 904
TseFI	GTSAC	2 cut(s)	356, 458
TseI	GCWGC	2 cut(s)	102, 925
Tsp45I	GTSAC	2 cut(s)	356, 458
TspDTI	ATGAA	8 cut(s)	135, 195, 395, 443, 618, 801, 842, 857
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	15, 904
VneI	GTGCAC	1 cut(s)	411
XagI	CCTNNNNNAGG	1 cut(s)	542
XceI	RCATGY	1 cut(s)	896
XmiI	GTMKAC	3 cut(s)	5, 24, 988
XspI	CTAG	1 cut(s)	30
ZrmI	AGTACT	1 cut(s)	673
Zsp2I	ATGCAT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.