Rh2DG161700

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001461
Physical Location & Seq
Forward (+)
13852052 .. 13856945
4894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG161700.1

Sequence Viewer

Length: 717 bp
ATGTCCGCTCAGAATGTCAATTTGAAATTTTGCAACAATATATATTCTTGTAGAATTGTTGGATTGATGAACAGAATTTTATTTGCACCTACGTACCTTGATGAAGACATCTTCATTCAGCTCGACCATGGAGATGATCTCCCTGCTGAAATCAAATGTCTAGAGTCTGATGTAGTAATTCACAGCTACCAAATGTCTACAGTGGATGAGAATGTATACTCTAGGTTCAGTTCCGACTACGATTTGGACACCGAAGAATATCTTGGAAGTGGAGCAAATGGAGTTGTAGTTTGCTGCAAGAATCGGTTGGATGAAAAAACGTATGCTATAAAGAAAATCTCAGTATTCGTTGATGAGGATTTCCCATTTGATGAACTCATGAGGGAGGCTGTCATTTTATCCAAGTTCAATAACCCTGCAATTGTACGATACCATTCGGTATGGATTGAGCCTACTTTTGTTGGCATAACTGGAGATCCTCAAATACCAACGGAAGAGCATCCAGTTGAAACAGACCAACCATGCCTGTACATTCAGCAGGAGCTATGTGACTGGTTAGCAATGGGCCTTGTCAAAACATTGCTCGGTAATTCCGAGTTAGAGGCGAAAAGAGTACCCCATCGTAAAAACTTTGAAAATGAAACTACACTATCCTCCATTTCTCCCTACCACTCTAAGAGAAAGGAGGGAGAGAATGATATCATTTCAAGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

238

Amino Acids

27.16

Weight (kDa)

4.63

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 84 - 153 6.1e-09 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 8
AccI GTMKAC 2 cut(s) 197, 216
AciI CCGC 1 cut(s) 6
AclWI GGATC 1 cut(s) 470
AcsI RAATTY 2 cut(s) 26, 75
AfaI GTAC 4 cut(s) 95, 426, 530, 615
AgsI TTSAA 5 cut(s) 25, 409, 509, 635, 708
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AluBI AGCT 3 cut(s) 121, 186, 544
AluI AGCT 3 cut(s) 121, 186, 544
AlwI GGATC 1 cut(s) 470
AoxI GGCC 1 cut(s) 565
ApeKI GCWGC 1 cut(s) 294
ApoI RAATTY 2 cut(s) 26, 75
AspS9I GGNCC 1 cut(s) 565
BaeI ACNNNNGTAYC 2 cut(s) 77, 110
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 281
BccI CCATC 1 cut(s) 627
BfaI CTAG 2 cut(s) 161, 222
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 1 cut(s) 295
BlsI GCNGC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 565
BmsI GCATC 1 cut(s) 508
BpiI GAAGAC 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 123, 155
BpmI CTGGAG 1 cut(s) 492
BsaAI YACGTR 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 127
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bse1I ACTGG 3 cut(s) 475, 503, 557
Bse3DI GCAATG 2 cut(s) 567, 578
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 3 cut(s) 211, 316, 499
BseMI GCAATG 2 cut(s) 567, 578
BseMII CTCAG 2 cut(s) 23, 354
BseNI ACTGG 3 cut(s) 475, 503, 557
BseXI GCAGC 1 cut(s) 281
BshFI GGCC 1 cut(s) 567
BsnI GGCC 1 cut(s) 567
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 2 cut(s) 136, 475
Bsp19I CCATGG 1 cut(s) 127
BspACI CCGC 1 cut(s) 6
BspANI GGCC 1 cut(s) 567
BspCNI CTCAG 2 cut(s) 22, 353
BspHI TCATGA 1 cut(s) 378
BspPI GGATC 1 cut(s) 470
BspQI GCTCTTC 1 cut(s) 489
BsrBI CCGCTC 1 cut(s) 8
BsrDI GCAATG 2 cut(s) 567, 578
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 3 cut(s) 475, 503, 557
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 2 cut(s) 136, 475
BssNAI GTATAC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 127
Bst1107I GTATAC 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 489
BstAUI TGTACA 1 cut(s) 528
BstBAI YACGTR 1 cut(s) 93
BstDEI CTNAG 3 cut(s) 9, 340, 675
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 3 cut(s) 211, 316, 499
BstKTI GATC 2 cut(s) 139, 478
BstMBI GATC 2 cut(s) 136, 475
BstSFI CTRYAG 1 cut(s) 198
BstSNI TACGTA 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BstZ17I GTATAC 1 cut(s) 217
BsuRI GGCC 1 cut(s) 567
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 3 cut(s) 211, 316, 499
BtsIMutI CAGTG 1 cut(s) 207
CciI TCATGA 1 cut(s) 378
Cfr13I GGNCC 1 cut(s) 565
Csp6I GTAC 4 cut(s) 94, 425, 529, 614
CviAII CATG 3 cut(s) 128, 379, 522
CviJI RGCY 6 cut(s) 121, 186, 389, 451, 544, 567
CviKI_1 RGCY 6 cut(s) 121, 186, 389, 451, 544, 567
CviQI GTAC 4 cut(s) 94, 425, 529, 614
DdeI CTNAG 3 cut(s) 9, 340, 675
DpnI GATC 2 cut(s) 138, 477
DpnII GATC 2 cut(s) 136, 475
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Eco105I TACGTA 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 127
Eco32I GATATC 1 cut(s) 700
EcoRV GATATC 1 cut(s) 700
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 3 cut(s) 131, 382, 525
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FatI CATG 3 cut(s) 127, 378, 521
FblI GTMKAC 2 cut(s) 197, 216
Fnu4HI GCNGC 1 cut(s) 295
FokI GGATG 3 cut(s) 218, 323, 486
Fsp4HI GCNGC 1 cut(s) 295
FspBI CTAG 2 cut(s) 161, 222
GluI GCNGC 1 cut(s) 295
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 1 cut(s) 567
Hin1II CATG 3 cut(s) 131, 382, 525
HinfI GANTC 2 cut(s) 164, 301
Hpy166II GTNNAC 2 cut(s) 198, 217
Hpy188I TCNGA 4 cut(s) 12, 169, 235, 595
Hpy188III TCNNGA 2 cut(s) 161, 379
Hpy8I GTNNAC 2 cut(s) 198, 217
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 2 cut(s) 92, 320
HpyCH4V TGCA 4 cut(s) 33, 86, 297, 419
HpyF3I CTNAG 3 cut(s) 9, 340, 675
HpySE526I ACGT 2 cut(s) 92, 320
Hsp92II CATG 3 cut(s) 131, 382, 525
Kzo9I GATC 2 cut(s) 136, 475
LguI GCTCTTC 1 cut(s) 489
LmnI GCTCC 2 cut(s) 272, 541
LpnPI CCDG 7 cut(s) 156, 429, 456, 516, 524, 538, 539
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 1 cut(s) 508
MaeI CTAG 2 cut(s) 161, 222
MaeII ACGT 2 cut(s) 92, 320
MaeIII GTNAC 1 cut(s) 548
MalI GATC 2 cut(s) 138, 477
MbiI CCGCTC 1 cut(s) 8
MboI GATC 2 cut(s) 136, 475
MboII GAAGA 4 cut(s) 103, 116, 266, 506
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 1 cut(s) 475
MluCI AATT 7 cut(s) 19, 26, 54, 75, 177, 420, 589
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 3 cut(s) 40, 258, 288
MnlI CCTC 7 cut(s) 349, 375, 379, 489, 595, 664, 679
MslI CAYNNNNRTG 1 cut(s) 132
MunI CAATTG 1 cut(s) 420
NcoI CCATGG 1 cut(s) 127
NdeII GATC 2 cut(s) 136, 475
NlaIII CATG 3 cut(s) 131, 382, 525
NmuCI GTSAC 1 cut(s) 548
PagI TCATGA 1 cut(s) 378
PciSI GCTCTTC 1 cut(s) 489
PcsI WCGNNNNNNNCGW 1 cut(s) 591
PfeI GAWTC 1 cut(s) 301
PkrI GCNGC 1 cut(s) 296
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Ppu21I YACGTR 1 cut(s) 93
PspPI GGNCC 1 cut(s) 565
PsuI RGATCY 1 cut(s) 475
RsaI GTAC 4 cut(s) 95, 426, 530, 615
RsaNI GTAC 4 cut(s) 94, 425, 529, 614
RseI CAYNNNNRTG 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 489
SatI GCNGC 1 cut(s) 295
Sau3AI GATC 2 cut(s) 136, 475
Sau96I GGNCC 1 cut(s) 565
SchI GAGTC 1 cut(s) 173
SetI ASST 8 cut(s) 91, 95, 99, 123, 188, 227, 323, 546
SfaNI GCATC 1 cut(s) 508
SfcI CTRYAG 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 132
SnaBI TACGTA 1 cut(s) 93
Sse9I AATT 7 cut(s) 19, 26, 54, 75, 177, 420, 589
SsiI CCGC 1 cut(s) 6
SspMI CTAG 2 cut(s) 161, 222
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 2 cut(s) 95, 323
TaqI TCGA 1 cut(s) 123
TasI AATT 7 cut(s) 19, 26, 54, 75, 177, 420, 589
TatI WGTACW 1 cut(s) 528
TfiI GAWTC 1 cut(s) 301
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 1 cut(s) 294
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 6 cut(s) 83, 103, 117, 327, 387, 654
TspGWI ACGGA 1 cut(s) 506
TspRI CASTG 1 cut(s) 207
XapI RAATTY 2 cut(s) 26, 75
XbaI TCTAGA 1 cut(s) 160
XmiI GTMKAC 2 cut(s) 197, 216
XspI CTAG 2 cut(s) 161, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.