Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

14248614 .. 14251020

Gene Structure 2407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG161600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAAGTCGTGAATCCTATTGCAATTCCATATGTGCCGCCGGGAATTATATGTCCTGACACTGGAGTCACTATCCAGACCTACCAGGTGTCTAATGTTGATGACAGAACCTACTCCAAGTTTAGCTCTGAGTATGATGTGGCAGCAGAAGAGTTTATTGGGGCTGGCGCATTCGGCGTGGTCGTTCGATGCAAGAACCTGATAGACAACCAAACTTATGCCATAAAGAAAATATCAATTGGCAACAGGGACAATACTGATGGATATGGCAACTATAGAGACCTATTAAGGGAGTCTATCATTTTAGCCACATTTGATCATCCTGCTGTTGTTCGGTATCACTCGACCTGGATGGAGTGCACTTTTGTTGGCACTACTGGAGGTGAACCTGATATTGTGGAAACCAATCCATGTCTTTACATACAACAGCAACTATGTGAGAGCACGTTGGAGCAAAAGATGAGGAGTGCCGAACTTTCAAAGGAAGAATGTGCATATATTTTCTCACAGGTGGCACGCGGCCTAGCACACATCCACAGTCACAACATAATGCATGGTGATCTTGGCAGAGGAAATATATTCTTGAACAAGAACCAAGCAAAAATTGGAGACTTTGGACTCTCCCGGATCATAGGTGAAGGTGATGATCTAATTCATTTAGGAAATCCCCCACCTCCATACGCTGCAGCTGATAAATGTGTCAATGCAAAAGCGGATGTCTACAGTCTGGGGATTCTGCTGGTGCAGATGTTTCTCAACATCAGAACAGATTCAGAAGCATCAAAGGTGTTTCCTGACCTGAAAAAAGAAGAACCAGTGTTTCCTGCCTACTGGCCTAACGGTGTGCTGAAGACTTGGGTGACAAACATGCTGAAAAAAAATCCATCAGAAAGACCATCATCATCAGATATCGTGGAGAACCTACGCAAGATAGAGGATGCTATTCAGGAGTTTGATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

320

Amino Acids

35.61

Weight (kDa)

5.08

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	49 - 308	1.5e-23	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	50 - 306	6e-35	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	720
AccII	CGCG	1 cut(s)	519
AciI	CCGC	3 cut(s)	38, 519, 713
AclWI	GGATC	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	869
AfiI	CCNNNNNNNGG	2 cut(s)	62, 289
AgsI	TTSAA	2 cut(s)	480, 586
AjnI	CCWGG	2 cut(s)	84, 347
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	2 cut(s)	126, 689
AluI	AGCT	2 cut(s)	126, 689
Alw21I	GWGCWC	2 cut(s)	362, 446
Alw26I	GTCTC	2 cut(s)	273, 603
Alw44I	GTGCAC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	635
AoxI	GGCC	2 cut(s)	520, 833
ApaLI	GTGCAC	1 cut(s)	358
ApeKI	GCWGC	3 cut(s)	143, 683, 686
Asp700I	GAANNNNTTC	1 cut(s)	769
AspLEI	GCGC	1 cut(s)	170
AsuC2I	CCSGG	2 cut(s)	42, 625
AsuHPI	GGTGA	5 cut(s)	395, 569, 647, 653, 871
BaeGI	GKGCMC	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	857
Bbv12I	GWGCWC	2 cut(s)	362, 446
BbvI	GCAGC	3 cut(s)	155, 670, 698
BccI	CCATC	4 cut(s)	254, 346, 892, 904
BciT130I	CCWGG	2 cut(s)	86, 349
BclI	TGATCA	1 cut(s)	316
BcnI	CCSGG	2 cut(s)	42, 625
BcoDI	GTCTC	2 cut(s)	273, 603
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	3 cut(s)	274, 684, 721
BisI	GCNGC	5 cut(s)	38, 144, 520, 684, 687
BlsI	GCNGC	5 cut(s)	39, 145, 521, 685, 688
Bme1390I	CCNGG	4 cut(s)	42, 86, 349, 625
BmrFI	CCNGG	4 cut(s)	42, 86, 349, 625
BmsI	GCATC	3 cut(s)	179, 788, 928
BpiI	GAAGAC	1 cut(s)	857
BpmI	CTGGAG	2 cut(s)	84, 399
BpuMI	CCSGG	2 cut(s)	42, 625
BsaI	GGTCTC	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 289
Bse1I	ACTGG	4 cut(s)	67, 382, 815, 836
BseBI	CCWGG	2 cut(s)	86, 349
BseGI	GGATG	5 cut(s)	319, 357, 531, 721, 943
BseLI	CCNNNNNNNGG	2 cut(s)	62, 289
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	4 cut(s)	67, 382, 815, 836
BseRI	GAGGAG	1 cut(s)	478
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	155, 670, 698
BsgI	GTGCAG	1 cut(s)	764
Bsh1236I	CGCG	1 cut(s)	519
BshFI	GGCC	2 cut(s)	522, 835
BsiHKAI	GWGCWC	2 cut(s)	362, 446
BsiSI	CCGG	2 cut(s)	41, 625
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	2 cut(s)	62, 289
BsmAI	GTCTC	2 cut(s)	273, 603
BsmFI	GGGAC	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	522, 835
Bso31I	GGTCTC	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	362, 446
Bsp143I	GATC	4 cut(s)	316, 559, 627, 646
BspACI	CCGC	3 cut(s)	38, 519, 713
BspANI	GGCC	2 cut(s)	522, 835
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	519
BspMAI	CTGCAG	1 cut(s)	688
BspPI	GGATC	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	273
BsrI	ACTGG	4 cut(s)	67, 382, 815, 836
BssMI	GATC	4 cut(s)	316, 559, 627, 646
Bst2UI	CCWGG	2 cut(s)	86, 349
Bst4CI	ACNGT	3 cut(s)	539, 725, 842
Bst6I	CTCTTC	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	166, 517
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	5 cut(s)	319, 357, 531, 721, 943
BstFNI	CGCG	1 cut(s)	519
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	4 cut(s)	319, 562, 630, 649
BstMAI	GTCTC	2 cut(s)	273, 603
BstMBI	GATC	4 cut(s)	316, 559, 627, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNI	CCWGG	2 cut(s)	86, 349
BstNSI	RCATGY	1 cut(s)	871
BstSCI	CCNGG	4 cut(s)	40, 84, 347, 623
BstSFI	CTRYAG	3 cut(s)	274, 684, 721
BstSLI	GKGCMC	1 cut(s)	362
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	3 cut(s)	155, 670, 698
BstV2I	GAAGAC	1 cut(s)	857
BsuRI	GGCC	2 cut(s)	522, 835
BtsCI	GGATG	5 cut(s)	319, 357, 531, 721, 943
BtsIMutI	CAGTG	2 cut(s)	60, 822
Cac8I	GCNNGC	2 cut(s)	166, 517
CfoI	GCGC	1 cut(s)	170
CsiI	ACCWGGT	1 cut(s)	84
CviAII	CATG	3 cut(s)	411, 554, 868
CviJI	RGCY	6 cut(s)	126, 164, 308, 522, 689, 835
CviKI_1	RGCY	6 cut(s)	126, 164, 308, 522, 689, 835
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	4 cut(s)	318, 561, 629, 648
DpnII	GATC	4 cut(s)	316, 559, 627, 646
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	273
Eco32I	GATATC	1 cut(s)	910
Eco57I	CTGAAG	1 cut(s)	869
EcoRII	CCWGG	2 cut(s)	84, 347
EcoRV	GATATC	1 cut(s)	910
EcoT22I	ATGCAT	1 cut(s)	555
FaeI	CATG	3 cut(s)	414, 557, 871
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	3 cut(s)	410, 553, 867
FauNDI	CATATG	1 cut(s)	31
FbaI	TGATCA	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	720
Fnu4HI	GCNGC	5 cut(s)	38, 144, 520, 684, 687
FokI	GGATG	5 cut(s)	306, 364, 518, 728, 950
Fsp4HI	GCNGC	5 cut(s)	38, 144, 520, 684, 687
FspBI	CTAG	1 cut(s)	524
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	5 cut(s)	38, 144, 520, 684, 687
GsuI	CTGGAG	2 cut(s)	84, 399
HaeIII	GGCC	2 cut(s)	522, 835
HapII	CCGG	2 cut(s)	41, 625
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	3 cut(s)	414, 557, 871
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HinfI	GANTC	7 cut(s)	13, 66, 293, 618, 733, 770, 956
HpaII	CCGG	2 cut(s)	41, 625
HphI	GGTGA	5 cut(s)	395, 569, 647, 653, 871
Hpy166II	GTNNAC	3 cut(s)	360, 386, 721
Hpy188I	TCNGA	5 cut(s)	130, 764, 775, 889, 907
Hpy188III	TCNNGA	6 cut(s)	10, 56, 76, 583, 794, 947
Hpy8I	GTNNAC	3 cut(s)	360, 386, 721
HpyAV	CCTTC	1 cut(s)	632
HpyCH4III	ACNGT	3 cut(s)	539, 725, 842
HpyCH4IV	ACGT	1 cut(s)	446
HpyCH4V	TGCA	8 cut(s)	23, 192, 360, 494, 553, 686, 707, 745
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	1 cut(s)	446
Hsp92II	CATG	3 cut(s)	414, 557, 871
HspAI	GCGC	1 cut(s)	168
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	316, 559, 627, 646
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	3 cut(s)	155, 670, 698
LweI	GCATC	3 cut(s)	179, 788, 928
MabI	ACCWGGT	1 cut(s)	84
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	1 cut(s)	446
MaeIII	GTNAC	3 cut(s)	67, 539, 859
MalI	GATC	4 cut(s)	318, 561, 629, 648
MboI	GATC	4 cut(s)	316, 559, 627, 646
MboII	GAAGA	4 cut(s)	161, 497, 821, 862
MfeI	CAATTG	1 cut(s)	237
MhlI	GDGCHC	2 cut(s)	362, 446
MluCI	AATT	5 cut(s)	24, 45, 237, 603, 651
MlyI	GAGTC	3 cut(s)	75, 302, 612
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	5 cut(s)	374, 456, 563, 684, 928
Mph1103I	ATGCAT	1 cut(s)	555
MroXI	GAANNNNTTC	1 cut(s)	769
MseI	TTAA	2 cut(s)	287, 961
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	2 cut(s)	41, 625
MspR9I	CCNGG	4 cut(s)	42, 86, 349, 625
MunI	CAATTG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	2 cut(s)	86, 349
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	1 cut(s)	174
NciI	CCSGG	2 cut(s)	42, 625
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	4 cut(s)	316, 559, 627, 646
NlaIII	CATG	3 cut(s)	414, 557, 871
NmuCI	GTSAC	3 cut(s)	67, 539, 859
NsiI	ATGCAT	1 cut(s)	555
NspI	RCATGY	1 cut(s)	871
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	769
PfeI	GAWTC	4 cut(s)	13, 733, 770, 956
PfoI	TCCNGGA	1 cut(s)	623
PkrI	GCNGC	5 cut(s)	39, 145, 521, 685, 688
PleI	GAGTC	3 cut(s)	74, 301, 612
PpsI	GAGTC	3 cut(s)	74, 301, 612
Psp6I	CCWGG	2 cut(s)	84, 347
PspGI	CCWGG	2 cut(s)	84, 347
PstI	CTGCAG	1 cut(s)	688
PvuII	CAGCTG	1 cut(s)	689
SaqAI	TTAA	2 cut(s)	287, 961
SatI	GCNGC	5 cut(s)	38, 144, 520, 684, 687
Sau3AI	GATC	4 cut(s)	316, 559, 627, 646
SchI	GAGTC	3 cut(s)	75, 302, 612
ScrFI	CCNGG	4 cut(s)	42, 86, 349, 625
SduI	GDGCHC	2 cut(s)	362, 446
SexAI	ACCWGGT	1 cut(s)	84
SfaNI	GCATC	3 cut(s)	179, 788, 928
SfcI	CTRYAG	3 cut(s)	274, 684, 721
Sse9I	AATT	5 cut(s)	24, 45, 237, 603, 651
SsiI	CCGC	3 cut(s)	38, 519, 713
SspMI	CTAG	1 cut(s)	524
StyD4I	CCNGG	4 cut(s)	40, 84, 347, 623
TaaI	ACNGT	3 cut(s)	539, 725, 842
TaiI	ACGT	1 cut(s)	449
TaqI	TCGA	2 cut(s)	187, 344
TasI	AATT	5 cut(s)	24, 45, 237, 603, 651
TauI	GCSGC	2 cut(s)	40, 522
TfiI	GAWTC	4 cut(s)	13, 733, 770, 956
Tru1I	TTAA	2 cut(s)	287, 961
Tru9I	TTAA	2 cut(s)	287, 961
TscAI	CASTG	2 cut(s)	67, 822
TseFI	GTSAC	3 cut(s)	67, 539, 859
TseI	GCWGC	3 cut(s)	143, 683, 686
Tsp45I	GTSAC	3 cut(s)	67, 539, 859
TspDTI	ATGAA	1 cut(s)	644
TspRI	CASTG	2 cut(s)	67, 822
VneI	GTGCAC	1 cut(s)	358
XceI	RCATGY	1 cut(s)	871
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	720
XmnI	GAANNNNTTC	1 cut(s)	769
XspI	CTAG	1 cut(s)	524
Zsp2I	ATGCAT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.