Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033667.1

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Reverse (-)

636 .. 1310

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033667.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgcagtgctgggttgagacggcattttggggaggacacgaaggtggtttcatcgctgaagagaaaaagccttgtttgtatctgaagctggaagcctgcgacagttctttagctgcccaaacaattaatgatttgaagaagatctgtgacatagtacaagctgtattgaagggacttgtttatcttcattcaaagggaatcgtccatggagatattagcgcaggaaacattttgattagtgatggaaaagccaaaatatgtgattttggacgagccagtcatggcactgatctcgatcagaaacaggacattaagaagtttgggttacttattgttgaaatgctcgatccaagtgcattgccagatgcaagattaagaagcaggtttcctaaagagttcaaggcattagctgaacaacttgaagagatgacagcccccaacccggagacacgaccaacctctgcagaacttctgcggcataagaagaagttaatcaaagctataatgaggatagagcgtcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04138 ko04140 ko04141 ko05160 ko05162 ko05164 ko05168 ko05169 map04138 map04140 map04141 map05160 map05162 map05164 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

174

Amino Acids

19.43

Weight (kDa)

8.56

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	276
Acc36I	ACCTGC	1 cut(s)	372
AciI	CCGC	1 cut(s)	475
AclWI	GGATC	1 cut(s)	341
AcuI	CTGAAG	2 cut(s)	78, 104
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	442
AgsI	TTSAA	6 cut(s)	136, 169, 192, 338, 400, 422
AleI	CACNNNNGTG	1 cut(s)	42
AluBI	AGCT	5 cut(s)	88, 113, 161, 410, 500
AluI	AGCT	5 cut(s)	88, 113, 161, 410, 500
Alw26I	GTCTC	2 cut(s)	11, 440
AlwI	GGATC	1 cut(s)	341
ApeKI	GCWGC	1 cut(s)	113
AseI	ATTAAT	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	443
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	1 cut(s)	36
BcgI	CGANNNNNNTGC	4 cut(s)	274, 308, 335, 369
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	2 cut(s)	11, 440
BfmI	CTRYAG	1 cut(s)	462
BfuAI	ACCTGC	1 cut(s)	372
BglII	AGATCT	1 cut(s)	141
BisI	GCNGC	2 cut(s)	114, 476
BlsI	GCNGC	2 cut(s)	115, 477
Bme1390I	CCNGG	1 cut(s)	443
BmrFI	CCNGG	1 cut(s)	443
BmsI	GCATC	1 cut(s)	355
BpuMI	CCSGG	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse1I	ACTGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	356
Bse8I	GATNNNNATC	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMI	GCAATG	1 cut(s)	356
BseNI	ACTGG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	100
BseYI	CCCAGC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	2 cut(s)	11, 440
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	186
Bsp143I	GATC	4 cut(s)	141, 289, 295, 346
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	1 cut(s)	475
BspMAI	CTGCAG	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	372
BspPI	GGATC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	4 cut(s)	141, 289, 295, 346
BssT1I	CCWWGG	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	2 cut(s)	54, 417
BstC8I	GCNNGC	1 cut(s)	97
BstDSI	CCRYGG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	4 cut(s)	144, 292, 298, 349
BstMAI	GTCTC	2 cut(s)	11, 440
BstMBI	GATC	4 cut(s)	141, 289, 295, 346
BstSCI	CCNGG	1 cut(s)	441
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	205
BtgZI	GCGATG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	2 cut(s)	11, 285
BveI	ACCTGC	1 cut(s)	372
Cac8I	GCNNGC	1 cut(s)	97
CfoI	GCGC	1 cut(s)	221
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	2 cut(s)	206, 281
CviQI	GTAC	1 cut(s)	155
DpnI	GATC	4 cut(s)	143, 291, 297, 348
DpnII	GATC	4 cut(s)	141, 289, 295, 346
DrdI	GACNNNNNNGTC	1 cut(s)	276
DseDI	GACNNNNNNGTC	1 cut(s)	276
Eam1104I	CTCTTC	2 cut(s)	54, 417
EarI	CTCTTC	2 cut(s)	54, 417
Eco130I	CCWWGG	1 cut(s)	205
Eco57I	CTGAAG	2 cut(s)	78, 104
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	2 cut(s)	209, 284
FaiI	YATR	6 cut(s)	152, 207, 259, 282, 480, 503
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	2 cut(s)	205, 280
Fnu4HI	GCNGC	2 cut(s)	114, 476
Fsp4HI	GCNGC	2 cut(s)	114, 476
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	2 cut(s)	114, 476
GsaI	CCCAGC	1 cut(s)	13
HapII	CCGG	1 cut(s)	443
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	209, 284
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	1 cut(s)	198
HpaII	CCGG	1 cut(s)	443
Hpy188I	TCNGA	2 cut(s)	84, 300
Hpy188III	TCNNGA	1 cut(s)	293
Hpy99I	CGWCG	1 cut(s)	522
HpyAV	CCTTC	2 cut(s)	35, 163
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	4 cut(s)	4, 356, 368, 464
Hsp92II	CATG	2 cut(s)	209, 284
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	4 cut(s)	141, 289, 295, 346
LpnPI	CCDG	8 cut(s)	74, 109, 207, 289, 290, 367, 375, 456
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	1 cut(s)	355
MaeIII	GTNAC	2 cut(s)	146, 324
MalI	GATC	4 cut(s)	143, 291, 297, 348
MboI	GATC	4 cut(s)	141, 289, 295, 346
MboII	GAAGA	6 cut(s)	71, 148, 151, 176, 434, 496
MflI	RGATCY	1 cut(s)	141
MluCI	AATT	1 cut(s)	123
MnlI	CCTC	3 cut(s)	26, 469, 501
MseI	TTAA	4 cut(s)	126, 312, 374, 491
MslI	CAYNNNNRTG	1 cut(s)	42
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	443
NciI	CCSGG	1 cut(s)	443
NcoI	CCATGG	1 cut(s)	205
NdeII	GATC	4 cut(s)	141, 289, 295, 346
NlaIII	CATG	2 cut(s)	209, 284
NmuCI	GTSAC	1 cut(s)	146
OliI	CACNNNNGTG	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	198
PkrI	GCNGC	2 cut(s)	115, 477
PshBI	ATTAAT	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	141
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	4 cut(s)	126, 312, 374, 491
SatI	GCNGC	2 cut(s)	114, 476
Sau3AI	GATC	4 cut(s)	141, 289, 295, 346
ScrFI	CCNGG	1 cut(s)	443
SetI	ASST	8 cut(s)	46, 90, 115, 163, 386, 412, 461, 502
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	42
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	475
StyD4I	CCNGG	1 cut(s)	441
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	3 cut(s)	294, 345, 520
TasI	AATT	1 cut(s)	123
TatI	WGTACW	1 cut(s)	154
TauI	GCSGC	1 cut(s)	478
TfiI	GAWTC	1 cut(s)	198
Tru1I	TTAA	4 cut(s)	126, 312, 374, 491
Tru9I	TTAA	4 cut(s)	126, 312, 374, 491
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	2 cut(s)	40, 176
TspRI	CASTG	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.