Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

14038160 .. 14065609

Gene Structure 27450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG162000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGAAGTCGAAAATTCACAGATTTTAAATCTCCCTGCTGAAATCAAATGTCTAGAGTCTGATGTAGTAATTCACAGCTACCAAATGTCTACAGTGGATGAGAATGTATACTCTAGGTTCAGTTCCGACTACGATTTGGACACCGAAGAATATCTTGGAAGTGGAGCAAATGGAGTTGTAGTTTGCTGCAAGAACCGGTTGGATGAAAAAACGTATGCTATAAAGAAAATCTCAGTATTCGTTGATGAGGATTTCCCATTTGATGAACTCATGAGGGAGGCTGTCATTTTATCCAAGTTCAATAACCCTGCAATTGTCCGATACCATTCGGTATGGATTGAGCCTACTTTTGTTGGCATAACTGGAGATCCTCAAATACCAACGGAAGAGCATCCAGTTGAGACAGACCAACCATGCCTGTACATTCAGCAGGAGCTATGTGACTGCACGGTAGAGCAAAAGATGAAGGCTGGAGCACTTACGCCGGAAGAATGTGCACACATTTTCTTGGAAACCGCAAAAGGCCTGAAACACATTCATGGTCACAATATCATGCATGGAGACATTAAGAAGGCAAATATATTCTTCAGCAACGGCCTGCTGAAAATTGGAGATTTTGGCCTCGCCCAGGAAATAGGCGATGGTACAAATGAGATTAAAACCAGACCTCCATACTCAGCACCTGATGAACTGGTTAATGCAAAAGCTGATGTGTTTAGTTTGGGTATTCTGCTGGTTGAGATGCTACTTAACAGTACTGGAGGACATAAAGCATCTGAGGTAATTTGTATGCTGACAAAACGAGGAAAAGCAGAGCTTCCTGACAGCTGGCCTGATGGCTTACTAAAGACATGGGTGATGAGGATGCTAAAAAAGGAACCATCACAGAGACCTTCATCATCAAGGATAATGAAGAAGAAAGTAGAAATAGAGGATGCTATTCTCAAGTTTCATCTGAAAAAGAAGCAGAAGGTACATGCCACTGCCGAAAAGCAGATTGAAGGTATGCAGCGCAAACACAGGAAGCCTAAGAATGTCAAAGCAACGATAGATATATATGCATGCACCCAAGCTTCTCCAAATTCTAATAGAATGATGAAGCAGAGGTGTAAACTGGATCATCAATTTTATCGAGCTCATATATGCTTCATGGAACCACTCAAGCATATCATGCTAGGCACAAAGTATGTGTACAGGTCATGTCTGGAAAAAGCCATTAGACATGTTGTGCCATGTATTTTGAAACCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

417

Amino Acids

47.35

Weight (kDa)

7.57

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	48 - 307	4.8e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	48 - 305	4.7e-23	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	89, 108
AciI	CCGC	1 cut(s)	516
AclWI	GGATC	2 cut(s)	362, 1125
AcsI	RAATTY	2 cut(s)	13, 1081
AcuI	CTGAAG	1 cut(s)	571
AfaI	GTAC	5 cut(s)	422, 646, 757, 975, 1193
AfiI	CCNNNNNNNGG	1 cut(s)	628
AflIII	ACRYGT	1 cut(s)	1222
AgeI	ACCGGT	1 cut(s)	195
AgsI	TTSAA	3 cut(s)	301, 1001, 1243
AjnI	CCWGG	1 cut(s)	627
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
AluBI	AGCT	7 cut(s)	78, 436, 707, 817, 828, 1073, 1136
AluI	AGCT	7 cut(s)	78, 436, 707, 817, 828, 1073, 1136
Alw21I	GWGCWC	3 cut(s)	478, 499, 1138
Alw26I	GTCTC	3 cut(s)	395, 555, 883
Alw44I	GTGCAC	1 cut(s)	495
AlwI	GGATC	2 cut(s)	362, 1125
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	4 cut(s)	523, 595, 619, 830
ApaLI	GTGCAC	1 cut(s)	495
ApeKI	GCWGC	2 cut(s)	186, 1009
ApoI	RAATTY	2 cut(s)	13, 1081
AsiGI	ACCGGT	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	1014
AsuHPI	GGTGA	1 cut(s)	868
BaeGI	GKGCMC	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	1138
Bbv12I	GWGCWC	3 cut(s)	478, 499, 1138
BbvI	GCAGC	2 cut(s)	173, 1021
BccI	CCATC	3 cut(s)	635, 830, 889
BceAI	ACGGC	1 cut(s)	610
BciT130I	CCWGG	1 cut(s)	629
BcoDI	GTCTC	3 cut(s)	395, 555, 883
BfaI	CTAG	3 cut(s)	53, 114, 1175
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	2 cut(s)	187, 1010
BlsI	GCNGC	2 cut(s)	188, 1011
BmcAI	AGTACT	1 cut(s)	757
Bme1390I	CCNGG	1 cut(s)	629
BmiI	GGNNCC	2 cut(s)	879, 1155
BmrFI	CCNGG	1 cut(s)	629
BmsI	GCATC	5 cut(s)	400, 732, 782, 855, 925
BpmI	CTGGAG	3 cut(s)	384, 492, 780
BpuEI	CTTGAG	2 cut(s)	929, 1145
BsaI	GGTCTC	1 cut(s)	883
BsaJI	CCNNGG	1 cut(s)	627
BsaWI	WCCGGW	1 cut(s)	195
BsaXI	ACNNNNNCTCC	4 cut(s)	165, 195, 652, 682
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	5 cut(s)	367, 395, 696, 763, 1119
BseBI	CCWGG	1 cut(s)	629
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	5 cut(s)	103, 208, 391, 870, 940
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMII	CTCAG	3 cut(s)	246, 690, 768
BseNI	ACTGG	5 cut(s)	367, 395, 696, 763, 1119
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	2 cut(s)	173, 1021
BsgI	GTGCAG	1 cut(s)	430
BshFI	GGCC	4 cut(s)	525, 597, 621, 832
BshTI	ACCGGT	1 cut(s)	195
BsiHKAI	GWGCWC	3 cut(s)	478, 499, 1138
BsiSI	CCGG	2 cut(s)	196, 485
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	3 cut(s)	395, 555, 883
BsnI	GGCC	4 cut(s)	525, 597, 621, 832
Bso31I	GGTCTC	1 cut(s)	883
Bsp1286I	GDGCHC	3 cut(s)	478, 499, 1138
Bsp1407I	TGTACA	2 cut(s)	420, 1191
Bsp143I	GATC	2 cut(s)	367, 1117
BspACI	CCGC	1 cut(s)	516
BspANI	GGCC	4 cut(s)	525, 597, 621, 832
BspCNI	CTCAG	3 cut(s)	245, 689, 769
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	879, 1155
BspPI	GGATC	2 cut(s)	362, 1125
BspQI	GCTCTTC	1 cut(s)	381
BspTNI	GGTCTC	1 cut(s)	883
BsrFI	RCCGGY	1 cut(s)	195
BsrGI	TGTACA	2 cut(s)	420, 1191
BsrI	ACTGG	5 cut(s)	367, 395, 696, 763, 1119
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	2 cut(s)	367, 1117
BssNAI	GTATAC	1 cut(s)	109
Bst1107I	GTATAC	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	629
Bst4CI	ACNGT	3 cut(s)	94, 451, 755
Bst6I	CTCTTC	1 cut(s)	381
BstAPI	GCANNNNNTGC	1 cut(s)	1171
BstAUI	TGTACA	2 cut(s)	420, 1191
BstC8I	GCNNGC	3 cut(s)	599, 830, 1063
BstDEI	CTNAG	4 cut(s)	232, 676, 777, 1029
BstENI	CCTNNNNNAGG	1 cut(s)	626
BstF5I	GGATG	5 cut(s)	103, 208, 391, 870, 940
BstHHI	GCGC	1 cut(s)	1014
BstKTI	GATC	2 cut(s)	370, 1120
BstMAI	GTCTC	3 cut(s)	395, 555, 883
BstMBI	GATC	2 cut(s)	367, 1117
BstMWI	GCNNNNNNNGC	1 cut(s)	1171
BstNI	CCWGG	1 cut(s)	629
BstNSI	RCATGY	3 cut(s)	980, 1065, 1226
BstSCI	CCNGG	1 cut(s)	627
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	2 cut(s)	173, 1021
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BstZ17I	GTATAC	1 cut(s)	109
BsuRI	GGCC	4 cut(s)	525, 597, 621, 832
BtgZI	GCGATG	1 cut(s)	654
BtsCI	GGATG	5 cut(s)	103, 208, 391, 870, 940
BtsI	GCAGTG	1 cut(s)	981
BtsIMutI	CAGTG	2 cut(s)	99, 981
Cac8I	GCNNGC	3 cut(s)	599, 830, 1063
CaiI	CAGNNNCTG	1 cut(s)	683
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	1 cut(s)	1014
Cfr10I	RCCGGY	1 cut(s)	195
Csp6I	GTAC	5 cut(s)	421, 645, 756, 974, 1192
CspAI	ACCGGT	1 cut(s)	195
CviQI	GTAC	5 cut(s)	421, 645, 756, 974, 1192
DdeI	CTNAG	4 cut(s)	232, 676, 777, 1029
DpnI	GATC	2 cut(s)	369, 1119
DpnII	GATC	2 cut(s)	367, 1117
DraI	TTTAAA	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Ecl136II	GAGCTC	1 cut(s)	1136
Eco147I	AGGCCT	1 cut(s)	525
Eco24I	GRGCYC	1 cut(s)	1138
Eco31I	GGTCTC	1 cut(s)	883
Eco53kI	GAGCTC	1 cut(s)	1136
Eco57I	CTGAAG	1 cut(s)	571
EcoICRI	GAGCTC	1 cut(s)	1136
EcoNI	CCTNNNNNAGG	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	627
EcoT22I	ATGCAT	2 cut(s)	558, 1063
EcoT38I	GRGCYC	1 cut(s)	1138
FalI	AAGNNNNNCTT	4 cut(s)	138, 170, 801, 833
FblI	GTMKAC	2 cut(s)	89, 108
Fnu4HI	GCNGC	2 cut(s)	187, 1010
FokI	GGATG	5 cut(s)	110, 215, 378, 877, 947
FriOI	GRGCYC	1 cut(s)	1138
Fsp4HI	GCNGC	2 cut(s)	187, 1010
FspBI	CTAG	3 cut(s)	53, 114, 1175
GlaI	GCGC	1 cut(s)	1013
GluI	GCNGC	2 cut(s)	187, 1010
GsuI	CTGGAG	3 cut(s)	384, 492, 780
HaeIII	GGCC	4 cut(s)	525, 597, 621, 832
HapII	CCGG	2 cut(s)	196, 485
HhaI	GCGC	1 cut(s)	1014
Hin6I	GCGC	1 cut(s)	1012
HinP1I	GCGC	1 cut(s)	1012
HindIII	AAGCTT	1 cut(s)	1071
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	2 cut(s)	196, 485
HphI	GGTGA	1 cut(s)	868
Hpy166II	GTNNAC	5 cut(s)	90, 109, 497, 1112, 1192
Hpy188I	TCNGA	5 cut(s)	61, 127, 320, 778, 957
Hpy188III	TCNNGA	4 cut(s)	53, 271, 821, 1205
Hpy8I	GTNNAC	5 cut(s)	90, 109, 497, 1112, 1192
HpyAV	CCTTC	5 cut(s)	460, 565, 903, 964, 995
HpyCH4III	ACNGT	3 cut(s)	94, 451, 755
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	9 cut(s)	189, 311, 447, 497, 556, 701, 1009, 1061, 1065
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1171
HpyF3I	CTNAG	4 cut(s)	232, 676, 777, 1029
HpySE526I	ACGT	1 cut(s)	212
HspAI	GCGC	1 cut(s)	1012
Kzo9I	GATC	2 cut(s)	367, 1117
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	3 cut(s)	164, 433, 473
Lsp1109I	GCAGC	2 cut(s)	173, 1021
LweI	GCATC	5 cut(s)	400, 732, 782, 855, 925
MaeI	CTAG	3 cut(s)	53, 114, 1175
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	2 cut(s)	440, 542
MalI	GATC	2 cut(s)	369, 1119
MboI	GATC	2 cut(s)	367, 1117
MboII	GAAGA	6 cut(s)	158, 398, 500, 577, 925, 928
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	3 cut(s)	478, 499, 1138
MluCI	AATT	7 cut(s)	13, 69, 312, 606, 783, 1081, 1124
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	2 cut(s)	150, 180
Mph1103I	ATGCAT	2 cut(s)	558, 1063
MseI	TTAA	5 cut(s)	26, 567, 657, 696, 750
MslI	CAYNNNNRTG	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	828
MspI	CCGG	2 cut(s)	196, 485
MspR9I	CCNGG	1 cut(s)	629
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	629
MwoI	GCNNNNNNNGC	1 cut(s)	1171
NdeII	GATC	2 cut(s)	367, 1117
NlaIV	GGNNCC	2 cut(s)	879, 1155
NmuCI	GTSAC	2 cut(s)	440, 542
NsiI	ATGCAT	2 cut(s)	558, 1063
NspI	RCATGY	3 cut(s)	980, 1065, 1226
PaeI	GCATGC	1 cut(s)	1065
PagI	TCATGA	1 cut(s)	270
PceI	AGGCCT	1 cut(s)	525
PciI	ACATGT	1 cut(s)	1222
PciSI	GCTCTTC	1 cut(s)	381
PinAI	ACCGGT	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	188, 1011
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PscI	ACATGT	1 cut(s)	1222
Psp124BI	GAGCTC	1 cut(s)	1138
Psp6I	CCWGG	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	627
PspN4I	GGNNCC	2 cut(s)	879, 1155
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	828
RsaI	GTAC	5 cut(s)	422, 646, 757, 975, 1193
RsaNI	GTAC	5 cut(s)	421, 645, 756, 974, 1192
RseI	CAYNNNNRTG	1 cut(s)	537
SacI	GAGCTC	1 cut(s)	1138
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	5 cut(s)	26, 567, 657, 696, 750
SatI	GCNGC	2 cut(s)	187, 1010
Sau3AI	GATC	2 cut(s)	367, 1117
ScaI	AGTACT	1 cut(s)	757
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	629
SduI	GDGCHC	3 cut(s)	478, 499, 1138
SfaNI	GCATC	5 cut(s)	400, 732, 782, 855, 925
SfcI	CTRYAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	537
SmlI	CTYRAG	2 cut(s)	944, 1160
SmoI	CTYRAG	2 cut(s)	944, 1160
SphI	GCATGC	1 cut(s)	1065
Sse9I	AATT	7 cut(s)	13, 69, 312, 606, 783, 1081, 1124
SseBI	AGGCCT	1 cut(s)	525
SsiI	CCGC	1 cut(s)	516
SspMI	CTAG	3 cut(s)	53, 114, 1175
SstI	GAGCTC	1 cut(s)	1138
StuI	AGGCCT	1 cut(s)	525
StyD4I	CCNGG	1 cut(s)	627
TaaI	ACNGT	3 cut(s)	94, 451, 755
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	9, 1132
TasI	AATT	7 cut(s)	13, 69, 312, 606, 783, 1081, 1124
TatI	WGTACW	3 cut(s)	420, 755, 1191
Tru1I	TTAA	5 cut(s)	26, 567, 657, 696, 750
Tru9I	TTAA	5 cut(s)	26, 567, 657, 696, 750
TscAI	CASTG	2 cut(s)	99, 988
TseFI	GTSAC	2 cut(s)	440, 542
TseI	GCWGC	2 cut(s)	186, 1009
Tsp45I	GTSAC	2 cut(s)	440, 542
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	2 cut(s)	99, 988
VneI	GTGCAC	1 cut(s)	495
XagI	CCTNNNNNAGG	1 cut(s)	626
XapI	RAATTY	2 cut(s)	13, 1081
XbaI	TCTAGA	1 cut(s)	52
XceI	RCATGY	3 cut(s)	980, 1065, 1226
XmiI	GTMKAC	2 cut(s)	89, 108
XspI	CTAG	3 cut(s)	53, 114, 1175
ZrmI	AGTACT	1 cut(s)	757
Zsp2I	ATGCAT	2 cut(s)	558, 1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.