Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

12511999 .. 12516507

Gene Structure 4509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGTATTTAATGATTAAGGAGAAAATAGTTACCTCTATTAGACTGGTTATGGTTGGCTGCGGATCTGAAGCGGGAAAAAGTGGAACCCATCATCATCATCTTGGAGAGTCAATCGTCAAGAGAGTTTTTGGTGCTCATCAAAGAATTGGGTCTTCAAGCGATGCCTTCTCTGAACAAGGAGTTTCTCATTTGTTGTTCTGGGCGATCATGGGGCGTCCCTATGGGCCAGTTTTCCTCAGGAGCTCAGTGGAAGAATCGGAGCAAGCCACAATGGAAGTCGTGAATCCTATTGCAATTCCATATGTGCCGCCGGGAATTATATGTCCTGACACTGGAGTCACTATCCAGACCTACCAGGTGTCTAATGTTGATGAGAGAACCTACTCCAAGTTTAGCTCTGAGTATGATGTGGCAGCAGAAGAGTTTATTGGGGCTGGCGCATTCGGCGTTGTCGTTCGATGCAAGAACCTGATAGACAACCAAACTTATGCCATAAAGAAAATATCAATTGGTAACAGGGGCAATACTGATGGATATGGCAACTATAGAGACCTATTAAGGGAGTCTATCATTTTAGCCACATTTGATCATCCTGCTGTTGTTCGGTATCACTCGACCTGGATGGAGTGCACTTTTGTTGGCACTACTGGAGGTGAACCTGATATTGTGGAAACCAATCCATGTCTTTACATACAACAGCAACTATGTGAGAGCACGTTGGAGCAAAAGATGAGGAGTACCGAACTTTCAAAGGAAGAATGTGCAGTCATTTTCTCACAGGTGGCACACGGCCTAGCACACATCCACAGTCACAACATAATGCATGGTGATCTTGGCAGAGGAAATATATTCTTGAACAAGAACCAAGCAAAAATTGGAGACTTTGGACTTTCCCGGATCATAGGTGAAGGTGATGATGTAATTCATTTAGGAAACCCCCCACCTCTATACGCCGCACCTGATAAATGTGTCCATGCAAATGCGGACGTGTTCAGTCTGGGGATTCTGCTGGTGCAGATGCTTCTCAACATCAGAACAGATTCAGAAGCACTGAAGGTGTTTCCTGACCTGAAAAAAGAAGAACCAGTGTTTCCTGCCTACTGGCCTAACGGTGTGCTGAAGACTTGGGTGACAAACATGCTGAAAGAAAATCCATCAGAAAGACCATCATCATCAGATATCGTGGAGAACCTACACGAGATAGAGGATGCTATTTGGGAGTTTGATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

410

Amino Acids

45.44

Weight (kDa)

5.38

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	139 - 398	2.6e-21	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	140 - 396	2.4e-34	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	335
AciI	CCGC	5 cut(s)	60, 71, 308, 954, 983
AclWI	GGATC	2 cut(s)	70, 905
AcuI	CTGAAG	3 cut(s)	87, 1073, 1139
AcyI	GRCGYC	1 cut(s)	214
AfaI	GTAC	1 cut(s)	739
AfiI	CCNNNNNNNGG	2 cut(s)	332, 559
AflIII	ACRYGT	1 cut(s)	987
AgsI	TTSAA	3 cut(s)	156, 750, 856
AjiI	CACGTC	1 cut(s)	988
AjnI	CCWGG	2 cut(s)	354, 617
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AluBI	AGCT	2 cut(s)	243, 396
AluI	AGCT	2 cut(s)	243, 396
Alw21I	GWGCWC	4 cut(s)	136, 245, 632, 716
Alw26I	GTCTC	2 cut(s)	543, 873
Alw44I	GTGCAC	1 cut(s)	628
AlwI	GGATC	2 cut(s)	70, 905
AoxI	GGCC	3 cut(s)	224, 790, 1103
ApaLI	GTGCAC	1 cut(s)	628
ApeKI	GCWGC	2 cut(s)	57, 413
Asp700I	GAANNNNTTC	1 cut(s)	1039
AspLEI	GCGC	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	2 cut(s)	312, 895
AsuHPI	GGTGA	5 cut(s)	665, 839, 917, 923, 1141
AxyI	CCTNAGG	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	632
BanII	GRGCYC	1 cut(s)	245
BauI	CACGAG	1 cut(s)	1196
BbsI	GAAGAC	2 cut(s)	144, 1127
Bbv12I	GWGCWC	4 cut(s)	136, 245, 632, 716
BbvI	GCAGC	2 cut(s)	44, 425
BccI	CCATC	5 cut(s)	96, 524, 616, 1162, 1174
BceAI	ACGGC	1 cut(s)	805
BciT130I	CCWGG	2 cut(s)	356, 619
BclI	TGATCA	1 cut(s)	586
BcnI	CCSGG	2 cut(s)	312, 895
BcoDI	GTCTC	2 cut(s)	543, 873
BfaI	CTAG	1 cut(s)	794
BfmI	CTRYAG	1 cut(s)	544
BisI	GCNGC	4 cut(s)	58, 308, 414, 954
BlsI	GCNGC	4 cut(s)	59, 309, 415, 955
Bme1390I	CCNGG	4 cut(s)	312, 356, 619, 895
BmgBI	CACGTC	1 cut(s)	988
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	4 cut(s)	312, 356, 619, 895
BmsI	GCATC	4 cut(s)	151, 449, 1008, 1198
BpiI	GAAGAC	2 cut(s)	144, 1127
BpmI	CTGGAG	2 cut(s)	354, 669
BpuMI	CCSGG	2 cut(s)	312, 895
BsaHI	GRCGYC	1 cut(s)	214
BsaI	GGTCTC	1 cut(s)	543
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 559
Bse1I	ACTGG	6 cut(s)	48, 227, 337, 652, 1085, 1106
Bse21I	CCTNAGG	1 cut(s)	236
BseBI	CCWGG	2 cut(s)	356, 619
BseGI	GGATG	4 cut(s)	589, 627, 801, 1213
BseLI	CCNNNNNNNGG	2 cut(s)	332, 559
BseMII	CTCAG	3 cut(s)	250, 258, 390
BseNI	ACTGG	6 cut(s)	48, 227, 337, 652, 1085, 1106
BseRI	GAGGAG	1 cut(s)	748
BseSI	GKGCMC	1 cut(s)	632
BseXI	GCAGC	2 cut(s)	44, 425
BsgI	GTGCAG	2 cut(s)	783, 1034
BshFI	GGCC	3 cut(s)	226, 792, 1105
BsiHKAI	GWGCWC	4 cut(s)	136, 245, 632, 716
BsiSI	CCGG	2 cut(s)	311, 895
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	2 cut(s)	332, 559
BsmAI	GTCTC	2 cut(s)	543, 873
BsmFI	GGGAC	1 cut(s)	201
BsmI	GAATGC	1 cut(s)	440
BsnI	GGCC	3 cut(s)	226, 792, 1105
Bso31I	GGTCTC	1 cut(s)	543
Bsp1286I	GDGCHC	4 cut(s)	136, 245, 632, 716
Bsp143I	GATC	5 cut(s)	62, 204, 586, 829, 897
BspACI	CCGC	5 cut(s)	60, 71, 308, 954, 983
BspANI	GGCC	3 cut(s)	226, 792, 1105
BspCNI	CTCAG	3 cut(s)	249, 257, 391
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	2 cut(s)	70, 905
BspTNI	GGTCTC	1 cut(s)	543
BsrI	ACTGG	6 cut(s)	48, 227, 337, 652, 1085, 1106
BssMI	GATC	5 cut(s)	62, 204, 586, 829, 897
BssNI	GRCGYC	1 cut(s)	214
BssSI	CACGAG	1 cut(s)	1196
Bst2BI	CACGAG	1 cut(s)	1196
Bst2UI	CCWGG	2 cut(s)	356, 619
Bst4CI	ACNGT	2 cut(s)	809, 1112
Bst6I	CTCTTC	1 cut(s)	414
BstACI	GRCGYC	1 cut(s)	214
BstC8I	GCNNGC	2 cut(s)	264, 436
BstDEI	CTNAG	3 cut(s)	236, 244, 399
BstF5I	GGATG	4 cut(s)	589, 627, 801, 1213
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	5 cut(s)	65, 207, 589, 832, 900
BstMAI	GTCTC	2 cut(s)	543, 873
BstMBI	GATC	5 cut(s)	62, 204, 586, 829, 897
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstNI	CCWGG	2 cut(s)	356, 619
BstNSI	RCATGY	1 cut(s)	1141
BstSCI	CCNGG	4 cut(s)	310, 354, 617, 893
BstSFI	CTRYAG	1 cut(s)	544
BstSLI	GKGCMC	1 cut(s)	632
BstV1I	GCAGC	2 cut(s)	44, 425
BstV2I	GAAGAC	2 cut(s)	144, 1127
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
Bsu36I	CCTNAGG	1 cut(s)	236
BsuRI	GGCC	3 cut(s)	226, 792, 1105
BtgZI	GCGATG	1 cut(s)	174
BtrI	CACGTC	1 cut(s)	988
BtsCI	GGATG	4 cut(s)	589, 627, 801, 1213
BtsIMutI	CAGTG	4 cut(s)	252, 330, 1049, 1092
Cac8I	GCNNGC	2 cut(s)	264, 436
CfoI	GCGC	1 cut(s)	440
Cfr13I	GGNCC	1 cut(s)	224
CseI	GACGC	1 cut(s)	203
CsiI	ACCWGGT	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	738
CviAII	CATG	5 cut(s)	208, 681, 824, 974, 1138
CviJI	RGCY	9 cut(s)	57, 226, 243, 266, 396, 434, 578, 792, 1105
CviKI_1	RGCY	9 cut(s)	57, 226, 243, 266, 396, 434, 578, 792, 1105
CviQI	GTAC	1 cut(s)	738
DdeI	CTNAG	3 cut(s)	236, 244, 399
DpnI	GATC	5 cut(s)	64, 206, 588, 831, 899
DpnII	GATC	5 cut(s)	62, 204, 586, 829, 897
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Ecl136II	GAGCTC	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	245
Eco31I	GGTCTC	1 cut(s)	543
Eco32I	GATATC	1 cut(s)	1180
Eco53kI	GAGCTC	1 cut(s)	243
Eco57I	CTGAAG	3 cut(s)	87, 1073, 1139
Eco81I	CCTNAGG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	243
EcoRII	CCWGG	2 cut(s)	354, 617
EcoRV	GATATC	1 cut(s)	1180
EcoT22I	ATGCAT	1 cut(s)	825
EcoT38I	GRGCYC	1 cut(s)	245
FaeI	CATG	5 cut(s)	211, 684, 827, 977, 1141
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	5 cut(s)	207, 680, 823, 973, 1137
FauI	CCCGC	1 cut(s)	64
FauNDI	CATATG	1 cut(s)	301
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	4 cut(s)	58, 308, 414, 954
FokI	GGATG	4 cut(s)	576, 634, 788, 1220
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	4 cut(s)	58, 308, 414, 954
FspBI	CTAG	1 cut(s)	794
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	4 cut(s)	58, 308, 414, 954
GsuI	CTGGAG	2 cut(s)	354, 669
HaeIII	GGCC	3 cut(s)	226, 792, 1105
HapII	CCGG	2 cut(s)	311, 895
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	440
Hin1I	GRCGYC	1 cut(s)	214
Hin1II	CATG	5 cut(s)	211, 684, 827, 977, 1141
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HinfI	GANTC	8 cut(s)	107, 254, 283, 336, 563, 1003, 1040, 1226
HpaII	CCGG	2 cut(s)	311, 895
HphI	GGTGA	5 cut(s)	665, 839, 917, 923, 1141
Hpy166II	GTNNAC	2 cut(s)	630, 656
Hpy188I	TCNGA	8 cut(s)	67, 172, 259, 400, 1034, 1045, 1159, 1177
Hpy188III	TCNNGA	7 cut(s)	118, 238, 280, 326, 346, 853, 1064
Hpy8I	GTNNAC	2 cut(s)	630, 656
HpyAV	CCTTC	3 cut(s)	175, 902, 1048
HpyCH4III	ACNGT	2 cut(s)	809, 1112
HpyCH4IV	ACGT	2 cut(s)	716, 987
HpyCH4V	TGCA	7 cut(s)	293, 462, 630, 764, 823, 977, 1015
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	3 cut(s)	236, 244, 399
HpySE526I	ACGT	2 cut(s)	716, 987
Hsp92I	GRCGYC	1 cut(s)	214
Hsp92II	CATG	5 cut(s)	211, 684, 827, 977, 1141
HspAI	GCGC	1 cut(s)	438
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	5 cut(s)	62, 204, 586, 829, 897
LmnI	GCTCC	3 cut(s)	240, 259, 721
Lsp1109I	GCAGC	2 cut(s)	44, 425
LweI	GCATC	4 cut(s)	151, 449, 1008, 1198
MabI	ACCWGGT	1 cut(s)	354
MaeI	CTAG	1 cut(s)	794
MaeII	ACGT	2 cut(s)	716, 987
MaeIII	GTNAC	5 cut(s)	28, 337, 512, 809, 1129
MalI	GATC	5 cut(s)	64, 206, 588, 831, 899
MboI	GATC	5 cut(s)	62, 204, 586, 829, 897
MboII	GAAGA	6 cut(s)	144, 263, 431, 767, 1091, 1132
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	62
MhlI	GDGCHC	4 cut(s)	136, 245, 632, 716
MluCI	AATT	6 cut(s)	144, 294, 315, 507, 873, 921
MlyI	GAGTC	3 cut(s)	116, 345, 572
MmeI	TCCRAC	1 cut(s)	699
MnlI	CCTC	7 cut(s)	43, 245, 644, 726, 833, 954, 1198
Mph1103I	ATGCAT	1 cut(s)	825
MroXI	GAANNNNTTC	1 cut(s)	1039
MseI	TTAA	4 cut(s)	8, 15, 557, 1231
MslI	CAYNNNNRTG	1 cut(s)	978
MspI	CCGG	2 cut(s)	311, 895
MspR9I	CCNGG	4 cut(s)	312, 356, 619, 895
MunI	CAATTG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	440
MvaI	CCWGG	2 cut(s)	356, 619
MwoI	GCNNNNNNNGC	1 cut(s)	444
NciI	CCSGG	2 cut(s)	312, 895
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	5 cut(s)	62, 204, 586, 829, 897
NlaIII	CATG	5 cut(s)	211, 684, 827, 977, 1141
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	3 cut(s)	337, 809, 1129
NsiI	ATGCAT	1 cut(s)	825
NspI	RCATGY	1 cut(s)	1141
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PctI	GAATGC	1 cut(s)	440
PdmI	GAANNNNTTC	1 cut(s)	1039
PfeI	GAWTC	5 cut(s)	254, 283, 1003, 1040, 1226
PfoI	TCCNGGA	1 cut(s)	893
PkrI	GCNGC	4 cut(s)	59, 309, 415, 955
PleI	GAGTC	3 cut(s)	115, 344, 571
PpsI	GAGTC	3 cut(s)	115, 344, 571
Psp124BI	GAGCTC	1 cut(s)	245
Psp6I	CCWGG	2 cut(s)	354, 617
PspGI	CCWGG	2 cut(s)	354, 617
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	62
RsaI	GTAC	1 cut(s)	739
RsaNI	GTAC	1 cut(s)	738
RseI	CAYNNNNRTG	1 cut(s)	978
SacI	GAGCTC	1 cut(s)	245
SaqAI	TTAA	4 cut(s)	8, 15, 557, 1231
SatI	GCNGC	4 cut(s)	58, 308, 414, 954
Sau3AI	GATC	5 cut(s)	62, 204, 586, 829, 897
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	3 cut(s)	116, 345, 572
ScrFI	CCNGG	4 cut(s)	312, 356, 619, 895
SduI	GDGCHC	4 cut(s)	136, 245, 632, 716
SexAI	ACCWGGT	1 cut(s)	354
SfaNI	GCATC	4 cut(s)	151, 449, 1008, 1198
SfcI	CTRYAG	1 cut(s)	544
SmiMI	CAYNNNNRTG	1 cut(s)	978
Sse9I	AATT	6 cut(s)	144, 294, 315, 507, 873, 921
SsiI	CCGC	5 cut(s)	60, 71, 308, 954, 983
SspMI	CTAG	1 cut(s)	794
SstI	GAGCTC	1 cut(s)	245
StyD4I	CCNGG	4 cut(s)	310, 354, 617, 893
TaaI	ACNGT	2 cut(s)	809, 1112
TaiI	ACGT	2 cut(s)	719, 990
TaqI	TCGA	2 cut(s)	457, 614
TasI	AATT	6 cut(s)	144, 294, 315, 507, 873, 921
TauI	GCSGC	2 cut(s)	310, 956
TfiI	GAWTC	5 cut(s)	254, 283, 1003, 1040, 1226
Tru1I	TTAA	4 cut(s)	8, 15, 557, 1231
Tru9I	TTAA	4 cut(s)	8, 15, 557, 1231
TscAI	CASTG	4 cut(s)	252, 337, 1056, 1092
TseFI	GTSAC	3 cut(s)	337, 809, 1129
TseI	GCWGC	2 cut(s)	57, 413
Tsp45I	GTSAC	3 cut(s)	337, 809, 1129
TspDTI	ATGAA	1 cut(s)	914
TspRI	CASTG	4 cut(s)	252, 337, 1056, 1092
VneI	GTGCAC	1 cut(s)	628
XceI	RCATGY	1 cut(s)	1141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	872
XmnI	GAANNNNTTC	1 cut(s)	1039
XspI	CTAG	1 cut(s)	794
Zsp2I	ATGCAT	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.