Rh2CG163400

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001461
Physical Location & Seq
Forward (+)
14459076 .. 14460833
1758 bp
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UTR
Exon/CDS
Intron
Rh2CG163400.1

Sequence Viewer

Length: 426 bp
ATGCACGGAGATATCACCAAGGCGAACATTCTCTTCTGCAATGGTGAAGCCAAAATCTCTGATTTTGGACTTGCCCGTACAATTGGGGCAAAGAATGATGAGGTTTACATGAAGGCGTTCCAACCTTATAGAGCACCTGAGAGGAAGACTGCTGATGCAGATGTCAAGGCTGATATATACAGCTTGGGAACCCTTTTATTCGAGATGCTACAGCCCTTTACAACAGATAGCCACAGAGGTGTTGTTCTTACTGCCTTGAGGGATACGAAAATCTTTCCGAAAGGCTGGACTGATAACCCAGTAAGGACATGGGTGCTGGGAATGATAAATAATGCCCCATCAGAAAGACCCTCAGCATCAGATCTTCTGCACCACCGCGAAAGGATTAAGGCCGATATTCTAAGGTCTGAGGCAATGCCCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

141

Amino Acids

15.8

Weight (kDa)

7.89

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 125 1.2e-15 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 1 - 123 1.1e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 378
AciI CCGC 1 cut(s) 376
AfaI GTAC 1 cut(s) 79
AleI CACNNNNGTG 1 cut(s) 237
AluBI AGCT 1 cut(s) 183
AluI AGCT 1 cut(s) 183
Alw21I GWGCWC 1 cut(s) 136
AoxI GGCC 1 cut(s) 390
Asp700I GAANNNNTTC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 7, 56
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 136
BbvCI CCTCAGC 1 cut(s) 352
BccI CCATC 1 cut(s) 346
BciVI GTATCC 1 cut(s) 256
BfmI CTRYAG 1 cut(s) 209
BfuI GTATCC 1 cut(s) 256
BglII AGATCT 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 190
BmrI ACTGGG 2 cut(s) 293, 414
BmsI GCATC 3 cut(s) 145, 195, 365
BmuI ACTGGG 2 cut(s) 293, 414
BpiI GAAGAC 1 cut(s) 152
Bpu10I CCTNAGC 1 cut(s) 352
BpuEI CTTGAG 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 18
Bse1I ACTGG 2 cut(s) 299, 420
Bse3DI GCAATG 2 cut(s) 46, 420
BseDI CCNNGG 1 cut(s) 18
BseMI GCAATG 2 cut(s) 46, 420
BseMII CTCAG 3 cut(s) 129, 366, 399
BseNI ACTGG 2 cut(s) 299, 420
BseYI CCCAGC 1 cut(s) 316
BsgI GTGCAG 1 cut(s) 353
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 1 cut(s) 392
BsiHKAI GWGCWC 1 cut(s) 136
BsnI GGCC 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 361
BspACI CCGC 1 cut(s) 376
BspANI GGCC 1 cut(s) 392
BspCNI CTCAG 3 cut(s) 130, 365, 400
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 190
BsrDI GCAATG 2 cut(s) 46, 420
BsrI ACTGG 2 cut(s) 299, 420
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 1 cut(s) 361
BssT1I CCWWGG 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 38
BstDEI CTNAG 4 cut(s) 138, 352, 401, 408
BstFNI CGCG 1 cut(s) 378
BstKTI GATC 1 cut(s) 364
BstMBI GATC 1 cut(s) 361
BstSFI CTRYAG 1 cut(s) 209
BstUI CGCG 1 cut(s) 378
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BsuI GTATCC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 392
Csp6I GTAC 1 cut(s) 78
CviAII CATG 2 cut(s) 109, 309
CviJI RGCY 7 cut(s) 50, 170, 183, 214, 231, 285, 392
CviKI_1 RGCY 7 cut(s) 50, 170, 183, 214, 231, 285, 392
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 4 cut(s) 138, 352, 401, 408
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 18
Eco32I GATATC 1 cut(s) 13
EcoRV GATATC 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 2 cut(s) 112, 312
FaiI YATR 5 cut(s) 110, 129, 176, 178, 310
FatI CATG 2 cut(s) 108, 308
GsaI CCCAGC 1 cut(s) 320
HaeIII GGCC 1 cut(s) 392
Hin1II CATG 2 cut(s) 112, 312
HphI GGTGA 2 cut(s) 7, 56
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 5 cut(s) 61, 279, 343, 361, 409
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 106
HpyCH4V TGCA 4 cut(s) 4, 39, 158, 370
HpyF3I CTNAG 4 cut(s) 138, 352, 401, 408
Hsp92II CATG 2 cut(s) 112, 312
Kzo9I GATC 1 cut(s) 361
LpnPI CCDG 4 cut(s) 150, 271, 302, 312
LweI GCATC 3 cut(s) 145, 195, 365
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 3 cut(s) 25, 157, 356
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 6 cut(s) 94, 135, 230, 252, 361, 403
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 2 cut(s) 387, 424
MslI CAYNNNNRTG 1 cut(s) 237
MunI CAATTG 1 cut(s) 81
MvnI CGCG 1 cut(s) 378
NdeII GATC 1 cut(s) 361
NlaIII CATG 2 cut(s) 112, 312
NlaIV GGNNCC 1 cut(s) 190
OliI CACNNNNGTG 1 cut(s) 237
PdmI GAANNNNTTC 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 2 cut(s) 387, 424
Sau3AI GATC 1 cut(s) 361
SduI GDGCHC 1 cut(s) 136
SetI ASST 6 cut(s) 105, 127, 139, 185, 241, 407
SfaNI GCATC 3 cut(s) 145, 195, 365
SfcI CTRYAG 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
Sse9I AATT 1 cut(s) 81
SsiI CCGC 1 cut(s) 376
StyI CCWWGG 1 cut(s) 18
TaqI TCGA 1 cut(s) 201
TasI AATT 1 cut(s) 81
Tru1I TTAA 2 cut(s) 387, 424
Tru9I TTAA 2 cut(s) 387, 424
TspDTI ATGAA 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 306
XmnI GAANNNNTTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.