Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

14422192 .. 14424533

Gene Structure 2342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG163100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAGTTTCCAGCTGCAGATGCTGATGACAATCCTCAAGACAACGGGCCTCAGATGATGGGTCAGATTAGGTGTCCGATAACAGGAATTGTCATCAATACATATTTGGCACCACCTGGTGATAACCAGCTGCCCTCGTTTTTCTTGTCGCATTTTACGGAGCACAGAGTACTTGGTTCGGGAGGATATGCAACCGTAGTACAATGCACAAACAAGTTTGATGAGCAGGTCTATGCCATCAAGAAAATTCCCATTGGAGAAGTGATTGAAGATAATCCCGAGTCACAAGCTTTCAGCTATGCATCTCTTGTGAGGGAGGCGAGAGTATGGTCCCAGCTTAATCACCGGAATATCGTCCGATACTATGAGTCTTGGACTGAAAACAAGTACTGCGGTTTGCTTGATGAAGATTGGGATGGGGACCCAATAGAAACAGAAAATCCATGCTTGTACATTCAATTGGAACTATGTGACAGTTCCTTGGAACGCAAGCTGCAGCCAAATGAACAATGCATGAACAATTGGACCACCAGAGAAGAGTGTGCACAGATTTTTGAAAAAATTGTGAAAGGTCTGAACCACATTCATGGCAAAGGGATAATGCACGGAGATATCACCAAGGCGAACATTCTCTTCTGCAATGGTGAAGCCAAAATCTCTGATTTTGGACTTGCCCGAACAACTGGGGCAAAGAATGATGAGGTTGACATGAAGGCGTTCCGACCTTATAGAGCACCTGAGAGGAAGACTGCTGATGCAGATGTCAAGGCTGATATATACAGCTTGGGAATCCTTTTATTTGAGATGCTACAGCCCTTTACAACAGATAGCCACAGAGGTGTTGTTCTTACTGCCTTGAGGGATACGAAAATCTTTCCGAAAGGCTGGACTGATAACCCAGTAAGGACATGGGTGCTGGGAATGATAAATGATGCCCCATCAGAAAGACCCTCAGCATCAGATCTTCTGCAGCACCGCGAAAGGATTAAGGCTGATATTCTAAGGTCTGAGGCAATGCCCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

341

Amino Acids

38.58

Weight (kDa)

5.08

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	52 - 325	2.2e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	55 - 323	1.2e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	217
AccB1I	GGYRCC	1 cut(s)	109
AccII	CGCG	1 cut(s)	978
AciI	CCGC	2 cut(s)	393, 976
AcsI	RAATTY	1 cut(s)	246
AdeI	CACNNNGTG	1 cut(s)	119
AfaI	GTAC	4 cut(s)	171, 201, 389, 452
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	3 cut(s)	269, 458, 557
AjnI	CCWGG	1 cut(s)	115
AleI	CACNNNNGTG	1 cut(s)	837
AluBI	AGCT	7 cut(s)	14, 130, 290, 297, 337, 493, 783
AluI	AGCT	7 cut(s)	14, 130, 290, 297, 337, 493, 783
Alw21I	GWGCWC	3 cut(s)	165, 547, 736
Alw44I	GTGCAC	1 cut(s)	543
AlwNI	CAGNNNCTG	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	1 cut(s)	47
ApaLI	GTGCAC	1 cut(s)	543
ApeKI	GCWGC	5 cut(s)	14, 130, 493, 496, 970
ApoI	RAATTY	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	716
AspS9I	GGNCC	4 cut(s)	47, 330, 421, 525
AsuHPI	GGTGA	4 cut(s)	131, 335, 607, 656
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	3 cut(s)	330, 421, 525
BaeGI	GKGCMC	1 cut(s)	547
BanI	GGYRCC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	752
Bbv12I	GWGCWC	3 cut(s)	165, 547, 736
BbvCI	CCTCAGC	1 cut(s)	952
BbvI	GCAGC	4 cut(s)	117, 480, 508, 982
BccI	CCATC	4 cut(s)	52, 245, 410, 946
BciT130I	CCWGG	1 cut(s)	117
BciVI	GTATCC	1 cut(s)	856
BfmI	CTRYAG	4 cut(s)	15, 494, 809, 968
BfuAI	ACCTGC	1 cut(s)	217
BfuI	GTATCC	1 cut(s)	856
BglII	AGATCT	1 cut(s)	961
BisI	GCNGC	5 cut(s)	15, 131, 494, 497, 971
BlsI	GCNGC	5 cut(s)	16, 132, 495, 498, 972
BmcAI	AGTACT	2 cut(s)	171, 389
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	3 cut(s)	330, 421, 525
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	4 cut(s)	47, 330, 421, 525
BmiI	GGNNCC	4 cut(s)	111, 332, 422, 423
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	3 cut(s)	693, 893, 1014
BmsI	GCATC	6 cut(s)	10, 311, 745, 795, 922, 965
BmuI	ACTGGG	3 cut(s)	693, 893, 1014
BpiI	GAAGAC	1 cut(s)	752
Bpu10I	CCTNAGC	1 cut(s)	952
BpuEI	CTTGAG	2 cut(s)	21, 877
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	480, 618
BsaWI	WCCGGW	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	3 cut(s)	688, 899, 1020
Bse3DI	GCAATG	2 cut(s)	646, 1020
Bse8I	GATNNNNATC	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	480, 618
BseGI	GGATG	1 cut(s)	421
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMI	GCAATG	2 cut(s)	646, 1020
BseMII	CTCAG	4 cut(s)	65, 729, 966, 999
BseNI	ACTGG	3 cut(s)	688, 899, 1020
BseSI	GKGCMC	1 cut(s)	547
BseXI	GCAGC	4 cut(s)	117, 480, 508, 982
BseYI	CCCAGC	2 cut(s)	333, 916
Bsh1236I	CGCG	1 cut(s)	978
BshFI	GGCC	1 cut(s)	49
BshNI	GGYRCC	1 cut(s)	109
BsiHKAI	GWGCWC	3 cut(s)	165, 547, 736
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	346
BslFI	GGGAC	2 cut(s)	316, 434
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmFI	GGGAC	2 cut(s)	316, 434
BsnI	GGCC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	3 cut(s)	165, 547, 736
Bsp1407I	TGTACA	1 cut(s)	450
Bsp143I	GATC	1 cut(s)	961
BspACI	CCGC	2 cut(s)	393, 976
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	4 cut(s)	64, 730, 965, 1000
BspFNI	CGCG	1 cut(s)	978
BspLI	GGNNCC	4 cut(s)	111, 332, 422, 423
BspMAI	CTGCAG	3 cut(s)	19, 498, 972
BspMI	ACCTGC	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	109
BsrDI	GCAATG	2 cut(s)	646, 1020
BsrGI	TGTACA	1 cut(s)	450
BsrI	ACTGG	3 cut(s)	688, 899, 1020
BssECI	CCNNGG	2 cut(s)	480, 618
BssMI	GATC	1 cut(s)	961
BssT1I	CCWWGG	2 cut(s)	480, 618
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	196, 476
Bst6I	CTCTTC	2 cut(s)	531, 638
BstAUI	TGTACA	1 cut(s)	450
BstC8I	GCNNGC	1 cut(s)	491
BstDEI	CTNAG	5 cut(s)	51, 738, 952, 1001, 1008
BstF5I	GGATG	1 cut(s)	421
BstFNI	CGCG	1 cut(s)	978
BstKTI	GATC	1 cut(s)	964
BstMBI	GATC	1 cut(s)	961
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	4 cut(s)	15, 494, 809, 968
BstSLI	GKGCMC	1 cut(s)	547
BstUI	CGCG	1 cut(s)	978
BstV1I	GCAGC	4 cut(s)	117, 480, 508, 982
BstV2I	GAAGAC	1 cut(s)	752
BstX2I	RGATCY	1 cut(s)	961
BstXI	CCANNNNNNTGG	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	961
BsuI	GTATCC	1 cut(s)	856
BsuRI	GGCC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	421
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	491
CaiI	CAGNNNCTG	1 cut(s)	23
Cfr13I	GGNCC	4 cut(s)	47, 330, 421, 525
CsiI	ACCWGGT	1 cut(s)	115
Csp6I	GTAC	4 cut(s)	170, 200, 388, 451
CviAII	CATG	5 cut(s)	444, 514, 587, 709, 909
CviQI	GTAC	4 cut(s)	170, 200, 388, 451
DdeI	CTNAG	5 cut(s)	51, 738, 952, 1001, 1008
DpnI	GATC	1 cut(s)	963
DpnII	GATC	1 cut(s)	961
DraIII	CACNNNGTG	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	531, 638
EarI	CTCTTC	2 cut(s)	531, 638
Eco130I	CCWWGG	2 cut(s)	480, 618
Eco32I	GATATC	1 cut(s)	613
Eco47I	GGWCC	3 cut(s)	330, 421, 525
Eco88I	CYCGRG	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	613
EcoT14I	CCWWGG	2 cut(s)	480, 618
EcoT22I	ATGCAT	2 cut(s)	304, 515
ErhI	CCWWGG	2 cut(s)	480, 618
FaeI	CATG	5 cut(s)	447, 517, 590, 712, 912
FaqI	GGGAC	2 cut(s)	316, 434
FatI	CATG	5 cut(s)	443, 513, 586, 708, 908
Fnu4HI	GCNGC	5 cut(s)	15, 131, 494, 497, 971
FokI	GGATG	1 cut(s)	428
Fsp4HI	GCNGC	5 cut(s)	15, 131, 494, 497, 971
GluI	GCNGC	5 cut(s)	15, 131, 494, 497, 971
GsaI	CCCAGC	2 cut(s)	337, 920
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	1 cut(s)	346
Hin1II	CATG	5 cut(s)	447, 517, 590, 712, 912
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	3 cut(s)	281, 368, 789
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	4 cut(s)	131, 335, 607, 656
Hpy166II	GTNNAC	2 cut(s)	545, 706
Hpy188III	TCNNGA	4 cut(s)	38, 180, 241, 278
Hpy8I	GTNNAC	2 cut(s)	545, 706
HpyAV	CCTTC	1 cut(s)	706
HpyCH4III	ACNGT	2 cut(s)	196, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	5 cut(s)	51, 738, 952, 1001, 1008
Hsp92II	CATG	5 cut(s)	447, 517, 590, 712, 912
KflI	GGGWCCC	1 cut(s)	421
Kzo9I	GATC	1 cut(s)	961
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	4 cut(s)	117, 480, 508, 982
LweI	GCATC	6 cut(s)	10, 311, 745, 795, 922, 965
MabI	ACCWGGT	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	282, 470
MalI	GATC	1 cut(s)	963
MboI	GATC	1 cut(s)	961
MboII	GAAGA	6 cut(s)	281, 419, 548, 625, 757, 956
MfeI	CAATTG	2 cut(s)	458, 520
MflI	RGATCY	1 cut(s)	961
MhlI	GDGCHC	3 cut(s)	165, 547, 736
MluCI	AATT	5 cut(s)	87, 246, 458, 520, 561
MlyI	GAGTC	2 cut(s)	290, 377
MmeI	TCCRAC	1 cut(s)	745
Mph1103I	ATGCAT	2 cut(s)	304, 515
MroXI	GAANNNNTTC	1 cut(s)	716
MseI	TTAA	3 cut(s)	339, 987, 1024
MslI	CAYNNNNRTG	2 cut(s)	585, 837
MspA1I	CMGCKG	2 cut(s)	14, 130
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	1 cut(s)	117
MunI	CAATTG	2 cut(s)	458, 520
MvaI	CCWGG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	978
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	1 cut(s)	961
NlaIII	CATG	5 cut(s)	447, 517, 590, 712, 912
NlaIV	GGNNCC	4 cut(s)	111, 332, 422, 423
NmuCI	GTSAC	2 cut(s)	282, 470
NsiI	ATGCAT	2 cut(s)	304, 515
OliI	CACNNNNGTG	1 cut(s)	837
PdmI	GAANNNNTTC	1 cut(s)	716
PfeI	GAWTC	1 cut(s)	789
PkrI	GCNGC	5 cut(s)	16, 132, 495, 498, 972
PleI	GAGTC	2 cut(s)	289, 376
PpsI	GAGTC	2 cut(s)	289, 376
PpuMI	RGGWCCY	1 cut(s)	421
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	115
PspFI	CCCAGC	2 cut(s)	333, 916
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	4 cut(s)	111, 332, 422, 423
PspPI	GGNCC	4 cut(s)	47, 330, 421, 525
PspPPI	RGGWCCY	1 cut(s)	421
PstI	CTGCAG	3 cut(s)	19, 498, 972
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	961
PvuII	CAGCTG	2 cut(s)	14, 130
RsaI	GTAC	4 cut(s)	171, 201, 389, 452
RsaNI	GTAC	4 cut(s)	170, 200, 388, 451
RseI	CAYNNNNRTG	2 cut(s)	585, 837
SaqAI	TTAA	3 cut(s)	339, 987, 1024
SatI	GCNGC	5 cut(s)	15, 131, 494, 497, 971
Sau3AI	GATC	1 cut(s)	961
Sau96I	GGNCC	4 cut(s)	47, 330, 421, 525
ScaI	AGTACT	2 cut(s)	171, 389
SchI	GAGTC	2 cut(s)	290, 377
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	3 cut(s)	165, 547, 736
SexAI	ACCWGGT	1 cut(s)	115
SfaNI	GCATC	6 cut(s)	10, 311, 745, 795, 922, 965
SfcI	CTRYAG	4 cut(s)	15, 494, 809, 968
SinI	GGWCC	3 cut(s)	330, 421, 525
SmiMI	CAYNNNNRTG	2 cut(s)	585, 837
SmlI	CTYRAG	2 cut(s)	36, 856
SmoI	CTYRAG	2 cut(s)	36, 856
Sse9I	AATT	5 cut(s)	87, 246, 458, 520, 561
SsiI	CCGC	2 cut(s)	393, 976
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	2 cut(s)	480, 618
TaaI	ACNGT	2 cut(s)	196, 476
TasI	AATT	5 cut(s)	87, 246, 458, 520, 561
TatI	WGTACW	4 cut(s)	169, 199, 387, 450
TfiI	GAWTC	1 cut(s)	789
Tru1I	TTAA	3 cut(s)	339, 987, 1024
Tru9I	TTAA	3 cut(s)	339, 987, 1024
TseFI	GTSAC	2 cut(s)	282, 470
TseI	GCWGC	5 cut(s)	14, 130, 493, 496, 970
Tsp45I	GTSAC	2 cut(s)	282, 470
TspDTI	ATGAA	5 cut(s)	420, 519, 530, 575, 725
TspGWI	ACGGA	2 cut(s)	173, 621
VneI	GTGCAC	1 cut(s)	543
VpaK11BI	GGWCC	3 cut(s)	330, 421, 525
XapI	RAATTY	1 cut(s)	246
XcmI	CCANNNNNNNNNTGG	1 cut(s)	906
XmnI	GAANNNNTTC	1 cut(s)	716
ZrmI	AGTACT	2 cut(s)	171, 389
Zsp2I	ATGCAT	2 cut(s)	304, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.