Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

13602741 .. 13605310

Gene Structure 2570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017166

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGTTTCCAGCTGCAGATGCTGATGACAATCCTCAAGACAACGGGCCTCAGATGATGGGTCAGATTAGGTGTCCGATAACTGGAATTGTTATCAACACATATTTGGCACCACCTGGTGATAACCAGGACTATGCCATCAAGAAAATTCCCATTGGGGAAGTGATTGAAGATAATCCCGAGTCACAACCTTTCAGCTATGCATCTCTTGTAAGGGAGGCGAGAGTATGGTCCCGGCTTAATCACCGGAATATCGTCCGATACCATGAGTCTTGGACTGAAAACAAGTACTGCGGTTTGCTTGATGAAGATTGGGATGGGGACCCAATAGAAACAGAAAATCCATGCTTGTACATTCAATTGGAACTATGTGACAGTTCCTTGGGACACAAGCTGCAGCCAAACGAACAATGGATGAACAATTGGACCACCAGAGAAGAGTGTGCACAGATTTTTGAAGAACTTGTGGAAGGTCTGAACTACATTCATGGCAAAGGGATAATGCACGGAGATATCACCAAGGCGAACATTCTCCTCTGCAAGGGTAAAGCCAAAATCTCTGATTTTGGACTAGCCCGAACAATTGGGGCAAAGAATGATGAGGTTTACATGAACGCGTTCCGACCTTATAGAGCACCTGAGAGGAAGACTGCTGATGCAGATGTCAAGGCTGATATATACAGCTTGGGAATCCTTTTATTCGAGATGCTACAGCCCTTTAAAACAGATAGCCACAGAGGTGTTGTTCTTACTGCCTTGAGGGATGCGAAAATCTTTCCGAAAGGCTGGACTGATAACCCAGTAAGGACATGGGTGCTGAGAATGATAAATAATGCCCCATCAGAAAGACCCTCAGCATCAGATCTTCTGCACCACCGCAAAAGGATTAAGGCCGATATTCTAAGGTCTGAGGCAATGCCCAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

310

Amino Acids

35.2

Weight (kDa)

5.38

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	41 - 292	4.2e-34	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	66 - 290	1.7e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	109
AccII	CGCG	1 cut(s)	617
AciI	CCGC	2 cut(s)	294, 877
AcsI	RAATTY	1 cut(s)	147
AdeI	CACNNNGTG	1 cut(s)	119
AfaI	GTAC	2 cut(s)	290, 353
AfiI	CCNNNNNNNGG	2 cut(s)	83, 541
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	3 cut(s)	170, 359, 458
AjnI	CCWGG	2 cut(s)	115, 126
AleI	CACNNNNGTG	1 cut(s)	738
AluBI	AGCT	4 cut(s)	14, 198, 394, 684
AluI	AGCT	4 cut(s)	14, 198, 394, 684
Alw21I	GWGCWC	2 cut(s)	448, 637
Alw44I	GTGCAC	1 cut(s)	444
AlwNI	CAGNNNCTG	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	179
AoxI	GGCC	2 cut(s)	47, 891
ApaLI	GTGCAC	1 cut(s)	444
ApeKI	GCWGC	3 cut(s)	14, 394, 397
ApoI	RAATTY	1 cut(s)	147
Asp700I	GAANNNNTTC	1 cut(s)	617
AspS9I	GGNCC	4 cut(s)	47, 231, 322, 426
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	3 cut(s)	131, 236, 508
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	3 cut(s)	231, 322, 426
BaeGI	GKGCMC	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	653
Bbv12I	GWGCWC	2 cut(s)	448, 637
BbvCI	CCTCAGC	1 cut(s)	853
BbvI	GCAGC	2 cut(s)	381, 409
BccI	CCATC	4 cut(s)	52, 146, 311, 847
BciT130I	CCWGG	2 cut(s)	117, 128
BcnI	CCSGG	1 cut(s)	235
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	3 cut(s)	15, 395, 710
BglII	AGATCT	1 cut(s)	862
BisI	GCNGC	3 cut(s)	15, 395, 398
BlsI	GCNGC	3 cut(s)	16, 396, 399
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	3 cut(s)	117, 128, 235
Bme18I	GGWCC	3 cut(s)	231, 322, 426
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	4 cut(s)	47, 231, 322, 426
BmiI	GGNNCC	4 cut(s)	111, 233, 323, 324
BmrFI	CCNGG	3 cut(s)	117, 128, 235
BmrI	ACTGGG	2 cut(s)	794, 915
BmsI	GCATC	6 cut(s)	10, 212, 646, 696, 754, 866
BmuI	ACTGGG	2 cut(s)	794, 915
BpiI	GAAGAC	1 cut(s)	653
Bpu10I	CCTNAGC	1 cut(s)	853
BpuEI	CTTGAG	2 cut(s)	21, 778
BpuMI	CCSGG	1 cut(s)	235
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	381, 519
BsaWI	WCCGGW	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 541
Bse1I	ACTGG	3 cut(s)	88, 800, 921
Bse3DI	GCAATG	1 cut(s)	921
Bse8I	GATNNNNATC	1 cut(s)	30
BseBI	CCWGG	2 cut(s)	117, 128
BseDI	CCNNGG	2 cut(s)	381, 519
BseGI	GGATG	3 cut(s)	322, 420, 769
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	2 cut(s)	83, 541
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	5 cut(s)	65, 630, 809, 867, 900
BseNI	ACTGG	3 cut(s)	88, 800, 921
BseRI	GAGGAG	1 cut(s)	524
BseSI	GKGCMC	1 cut(s)	448
BseXI	GCAGC	2 cut(s)	381, 409
BsgI	GTGCAG	1 cut(s)	854
Bsh1236I	CGCG	1 cut(s)	617
BshFI	GGCC	2 cut(s)	49, 893
BshNI	GGYRCC	1 cut(s)	109
BsiHKAI	GWGCWC	2 cut(s)	448, 637
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	235, 247
BslFI	GGGAC	3 cut(s)	217, 335, 399
BslI	CCNNNNNNNGG	2 cut(s)	83, 541
BsmFI	GGGAC	3 cut(s)	217, 335, 399
BsnI	GGCC	2 cut(s)	49, 893
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	448, 637
Bsp1407I	TGTACA	1 cut(s)	351
Bsp143I	GATC	1 cut(s)	862
BspACI	CCGC	2 cut(s)	294, 877
BspANI	GGCC	2 cut(s)	49, 893
BspCNI	CTCAG	5 cut(s)	64, 631, 810, 866, 901
BspFNI	CGCG	1 cut(s)	617
BspLI	GGNNCC	4 cut(s)	111, 233, 323, 324
BspMAI	CTGCAG	2 cut(s)	19, 399
BspT107I	GGYRCC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	921
BsrGI	TGTACA	1 cut(s)	351
BsrI	ACTGG	3 cut(s)	88, 800, 921
BssECI	CCNNGG	2 cut(s)	381, 519
BssMI	GATC	1 cut(s)	862
BssT1I	CCWWGG	2 cut(s)	381, 519
Bst2UI	CCWGG	2 cut(s)	117, 128
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	432
BstAUI	TGTACA	1 cut(s)	351
BstDEI	CTNAG	6 cut(s)	51, 639, 818, 853, 902, 909
BstENI	CCTNNNNNAGG	1 cut(s)	539
BstF5I	GGATG	3 cut(s)	322, 420, 769
BstFNI	CGCG	1 cut(s)	617
BstKTI	GATC	1 cut(s)	865
BstMBI	GATC	1 cut(s)	862
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	2 cut(s)	117, 128
BstSCI	CCNGG	3 cut(s)	115, 126, 233
BstSFI	CTRYAG	3 cut(s)	15, 395, 710
BstSLI	GKGCMC	1 cut(s)	448
BstUI	CGCG	1 cut(s)	617
BstV1I	GCAGC	2 cut(s)	381, 409
BstV2I	GAAGAC	1 cut(s)	653
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
BsuRI	GGCC	2 cut(s)	49, 893
BtsCI	GGATG	3 cut(s)	322, 420, 769
BtsIMutI	CAGTG	1 cut(s)	928
CaiI	CAGNNNCTG	1 cut(s)	23
Cfr13I	GGNCC	4 cut(s)	47, 231, 322, 426
CsiI	ACCWGGT	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	289, 352
CviAII	CATG	5 cut(s)	266, 345, 488, 610, 810
CviQI	GTAC	2 cut(s)	289, 352
DdeI	CTNAG	6 cut(s)	51, 639, 818, 853, 902, 909
DpnI	GATC	1 cut(s)	864
DpnII	GATC	1 cut(s)	862
DraI	TTTAAA	1 cut(s)	721
DraIII	CACNNNGTG	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco130I	CCWWGG	2 cut(s)	381, 519
Eco32I	GATATC	1 cut(s)	514
Eco47I	GGWCC	3 cut(s)	231, 322, 426
Eco88I	CYCGRG	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	539
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRII	CCWGG	2 cut(s)	115, 126
EcoRV	GATATC	1 cut(s)	514
EcoT14I	CCWWGG	2 cut(s)	381, 519
EcoT22I	ATGCAT	1 cut(s)	205
ErhI	CCWWGG	2 cut(s)	381, 519
FaeI	CATG	5 cut(s)	269, 348, 491, 613, 813
FaqI	GGGAC	3 cut(s)	217, 335, 399
FatI	CATG	5 cut(s)	265, 344, 487, 609, 809
Fnu4HI	GCNGC	3 cut(s)	15, 395, 398
FokI	GGATG	3 cut(s)	329, 427, 776
Fsp4HI	GCNGC	3 cut(s)	15, 395, 398
FspBI	CTAG	1 cut(s)	572
GluI	GCNGC	3 cut(s)	15, 395, 398
HaeIII	GGCC	2 cut(s)	49, 893
HapII	CCGG	2 cut(s)	235, 247
Hin1II	CATG	5 cut(s)	269, 348, 491, 613, 813
HinfI	GANTC	3 cut(s)	182, 269, 690
HpaII	CCGG	2 cut(s)	235, 247
HphI	GGTGA	3 cut(s)	131, 236, 508
Hpy166II	GTNNAC	2 cut(s)	446, 607
Hpy188III	TCNNGA	4 cut(s)	38, 142, 179, 703
Hpy8I	GTNNAC	2 cut(s)	446, 607
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	8 cut(s)	17, 203, 397, 446, 505, 540, 659, 871
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	6 cut(s)	51, 639, 818, 853, 902, 909
Hsp92II	CATG	5 cut(s)	269, 348, 491, 613, 813
KflI	GGGWCCC	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	862
Lsp1109I	GCAGC	2 cut(s)	381, 409
LweI	GCATC	6 cut(s)	10, 212, 646, 696, 754, 866
MabI	ACCWGGT	1 cut(s)	115
MaeI	CTAG	1 cut(s)	572
MaeIII	GTNAC	2 cut(s)	183, 371
MalI	GATC	1 cut(s)	864
MboI	GATC	1 cut(s)	862
MboII	GAAGA	6 cut(s)	182, 320, 449, 470, 658, 857
MfeI	CAATTG	3 cut(s)	359, 421, 582
MflI	RGATCY	1 cut(s)	862
MhlI	GDGCHC	2 cut(s)	448, 637
MluCI	AATT	5 cut(s)	87, 147, 359, 421, 582
MluI	ACGCGT	1 cut(s)	615
MlyI	GAGTC	2 cut(s)	191, 278
MmeI	TCCRAC	1 cut(s)	646
Mph1103I	ATGCAT	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	617
MseI	TTAA	3 cut(s)	240, 720, 888
MslI	CAYNNNNRTG	1 cut(s)	738
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	2 cut(s)	235, 247
MspR9I	CCNGG	3 cut(s)	117, 128, 235
MunI	CAATTG	3 cut(s)	359, 421, 582
MvaI	CCWGG	2 cut(s)	117, 128
MvnI	CGCG	1 cut(s)	617
MwoI	GCNNNNNNNGC	1 cut(s)	20
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	1 cut(s)	862
NlaIII	CATG	5 cut(s)	269, 348, 491, 613, 813
NlaIV	GGNNCC	4 cut(s)	111, 233, 323, 324
NmuCI	GTSAC	2 cut(s)	183, 371
NsiI	ATGCAT	1 cut(s)	205
OliI	CACNNNNGTG	1 cut(s)	738
PdmI	GAANNNNTTC	1 cut(s)	617
PfeI	GAWTC	1 cut(s)	690
PkrI	GCNGC	3 cut(s)	16, 396, 399
PleI	GAGTC	2 cut(s)	190, 277
PpsI	GAGTC	2 cut(s)	190, 277
PpuMI	RGGWCCY	1 cut(s)	322
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	2 cut(s)	115, 126
PspGI	CCWGG	2 cut(s)	115, 126
PspN4I	GGNNCC	4 cut(s)	111, 233, 323, 324
PspPI	GGNCC	4 cut(s)	47, 231, 322, 426
PspPPI	RGGWCCY	1 cut(s)	322
PstI	CTGCAG	2 cut(s)	19, 399
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	862
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	2 cut(s)	290, 353
RsaNI	GTAC	2 cut(s)	289, 352
RseI	CAYNNNNRTG	1 cut(s)	738
SaqAI	TTAA	3 cut(s)	240, 720, 888
SatI	GCNGC	3 cut(s)	15, 395, 398
Sau3AI	GATC	1 cut(s)	862
Sau96I	GGNCC	4 cut(s)	47, 231, 322, 426
ScaI	AGTACT	1 cut(s)	290
SchI	GAGTC	2 cut(s)	191, 278
ScrFI	CCNGG	3 cut(s)	117, 128, 235
SduI	GDGCHC	2 cut(s)	448, 637
SexAI	ACCWGGT	1 cut(s)	115
SfaNI	GCATC	6 cut(s)	10, 212, 646, 696, 754, 866
SfcI	CTRYAG	3 cut(s)	15, 395, 710
SinI	GGWCC	3 cut(s)	231, 322, 426
SmiMI	CAYNNNNRTG	1 cut(s)	738
SmlI	CTYRAG	2 cut(s)	36, 757
SmoI	CTYRAG	2 cut(s)	36, 757
Sse9I	AATT	5 cut(s)	87, 147, 359, 421, 582
SsiI	CCGC	2 cut(s)	294, 877
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	3 cut(s)	115, 126, 233
StyI	CCWWGG	2 cut(s)	381, 519
TaaI	ACNGT	1 cut(s)	377
TaqI	TCGA	1 cut(s)	702
TasI	AATT	5 cut(s)	87, 147, 359, 421, 582
TatI	WGTACW	2 cut(s)	288, 351
TfiI	GAWTC	1 cut(s)	690
Tru1I	TTAA	3 cut(s)	240, 720, 888
Tru9I	TTAA	3 cut(s)	240, 720, 888
TscAI	CASTG	1 cut(s)	928
TseFI	GTSAC	2 cut(s)	183, 371
TseI	GCWGC	3 cut(s)	14, 394, 397
Tsp45I	GTSAC	2 cut(s)	183, 371
TspDTI	ATGAA	4 cut(s)	321, 431, 476, 626
TspGWI	ACGGA	1 cut(s)	522
TspRI	CASTG	1 cut(s)	928
VneI	GTGCAC	1 cut(s)	444
VpaK11BI	GGWCC	3 cut(s)	231, 322, 426
XagI	CCTNNNNNAGG	1 cut(s)	539
XapI	RAATTY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	2 cut(s)	408, 807
XmnI	GAANNNNTTC	1 cut(s)	617
XspI	CTAG	1 cut(s)	572
ZrmI	AGTACT	1 cut(s)	290
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.