Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006537.1

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

795 .. 2729

Gene Structure 1935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006537.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggatcaagatgctgctgaaggaattccaggttccggagcattcggggttgtggcaaggtgcaaaaacaagtttgatcaaaagcacagtgctattaagaaaattgcaattggctcaacacctgatgattgctttgaatctattataagggaggcacgcatttggtctctgcttgaccaccgcaatgtagtcaagtaccatgggtgctgggttgagatggcattttggggaggacacgaaggtggtttcatcgctgaagagaaaaagccttctgcccaaacaattaatgatttgaagaagatctgtgacatagtacaagctgtattgaaaggacttgtttatcttcattcaaagggaatcgtccatggagatattagcgcagcaaacattttgattagtgatggaaaagccaaaatatgtgattttggacgagccagtcatggcactgatctcgatcagaaacaggacattaagaagtttgggttacttaatgttgaaatgctcgatccaagtgcattgccagatgcaagattacgaagcaggtttcctaaagagttcaaggcattagctgaacaacttgaagagatgacagaccccaacccggagacaccaccaacctctgcagaacttctgcggcataagaagaagttaatcaaagctataatggggatagagcgtcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04138 ko04140 ko04141 ko05160 ko05162 ko05164 ko05168 ko05169 map04138 map04140 map04141 map05160 map05162 map05164 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

227

Amino Acids

25.16

Weight (kDa)

8.21

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AasI	GACNNNNNNGTC	1 cut(s)	435
Acc36I	ACCTGC	1 cut(s)	531
AccIII	TCCGGA	1 cut(s)	35
AciI	CCGC	2 cut(s)	181, 634
AclWI	GGATC	2 cut(s)	12, 500
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	2 cut(s)	39, 276
AfaI	GTAC	2 cut(s)	197, 315
AfiI	CCNNNNNNNGG	2 cut(s)	35, 601
AgsI	TTSAA	7 cut(s)	137, 295, 328, 351, 497, 559, 581
AjnI	CCWGG	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	3 cut(s)	320, 569, 659
AluI	AGCT	3 cut(s)	320, 569, 659
Alw26I	GTCTC	2 cut(s)	171, 599
AlwI	GGATC	2 cut(s)	12, 500
Aor13HI	TCCGGA	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	14, 380
ApoI	RAATTY	1 cut(s)	24
AseI	ATTAAT	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	380
AsuC2I	CCSGG	1 cut(s)	602
BbvI	GCAGC	1 cut(s)	392
BccI	CCATC	2 cut(s)	211, 395
BcgI	CGANNNNNNTGC	4 cut(s)	433, 467, 494, 528
BciT130I	CCWGG	1 cut(s)	30
BclI	TGATCA	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	602
BcoDI	GTCTC	2 cut(s)	171, 599
BfmI	CTRYAG	1 cut(s)	621
BfuAI	ACCTGC	1 cut(s)	531
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	3 cut(s)	15, 381, 635
BlsI	GCNGC	3 cut(s)	16, 382, 636
Bme1390I	CCNGG	2 cut(s)	30, 602
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	2 cut(s)	30, 602
BmsI	GCATC	1 cut(s)	514
BpuMI	CCSGG	1 cut(s)	602
BsaBI	GATNNNNATC	1 cut(s)	453
BsaI	GGTCTC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	199, 364
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 601
Bse1I	ACTGG	1 cut(s)	435
Bse3DI	GCAATG	2 cut(s)	190, 515
Bse8I	GATNNNNATC	1 cut(s)	453
BseAI	TCCGGA	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	199, 364
BseJI	GATNNNNATC	1 cut(s)	453
BseLI	CCNNNNNNNGG	2 cut(s)	35, 601
BseMI	GCAATG	2 cut(s)	190, 515
BseNI	ACTGG	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	392
BseYI	CCCAGC	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	36, 602
BslI	CCNNNNNNNGG	2 cut(s)	35, 601
BsmAI	GTCTC	2 cut(s)	171, 599
BsmI	GAATGC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	171
Bsp13I	TCCGGA	1 cut(s)	35
Bsp143I	GATC	6 cut(s)	4, 76, 300, 448, 454, 505
Bsp19I	CCATGG	2 cut(s)	199, 364
BspACI	CCGC	2 cut(s)	181, 634
BspEI	TCCGGA	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	34
BspMAI	CTGCAG	1 cut(s)	625
BspMI	ACCTGC	1 cut(s)	531
BspPI	GGATC	2 cut(s)	12, 500
BspTNI	GGTCTC	1 cut(s)	171
BsrDI	GCAATG	2 cut(s)	190, 515
BsrI	ACTGG	1 cut(s)	435
BssECI	CCNNGG	2 cut(s)	199, 364
BssMI	GATC	6 cut(s)	4, 76, 300, 448, 454, 505
BssT1I	CCWWGG	2 cut(s)	199, 364
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	2 cut(s)	252, 576
BstC8I	GCNNGC	1 cut(s)	157
BstDSI	CCRYGG	2 cut(s)	199, 364
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	6 cut(s)	7, 79, 303, 451, 457, 508
BstMAI	GTCTC	2 cut(s)	171, 599
BstMBI	GATC	6 cut(s)	4, 76, 300, 448, 454, 505
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	28, 600
BstSFI	CTRYAG	1 cut(s)	621
BstV1I	GCAGC	1 cut(s)	392
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BtgI	CCRYGG	2 cut(s)	199, 364
BtgZI	GCGATG	1 cut(s)	235
BtsIMutI	CAGTG	2 cut(s)	94, 444
BveI	ACCTGC	1 cut(s)	531
Cac8I	GCNNGC	1 cut(s)	157
CfoI	GCGC	1 cut(s)	380
CseI	GACGC	1 cut(s)	665
Csp6I	GTAC	2 cut(s)	196, 314
CviAII	CATG	3 cut(s)	200, 365, 440
CviJI	RGCY	7 cut(s)	114, 268, 320, 410, 434, 569, 659
CviKI_1	RGCY	7 cut(s)	114, 268, 320, 410, 434, 569, 659
CviQI	GTAC	2 cut(s)	196, 314
DpnI	GATC	6 cut(s)	6, 78, 302, 450, 456, 507
DpnII	GATC	6 cut(s)	4, 76, 300, 448, 454, 505
DrdI	GACNNNNNNGTC	1 cut(s)	435
DseDI	GACNNNNNNGTC	1 cut(s)	435
Eam1104I	CTCTTC	2 cut(s)	252, 576
EarI	CTCTTC	2 cut(s)	252, 576
Eco130I	CCWWGG	2 cut(s)	199, 364
Eco31I	GGTCTC	1 cut(s)	171
Eco57I	CTGAAG	2 cut(s)	39, 276
EcoRI	GAATTC	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	2 cut(s)	199, 364
ErhI	CCWWGG	2 cut(s)	199, 364
FaeI	CATG	3 cut(s)	203, 368, 443
FaiI	YATR	8 cut(s)	146, 201, 311, 366, 418, 441, 639, 662
FatI	CATG	3 cut(s)	199, 364, 439
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	3 cut(s)	15, 381, 635
Fsp4HI	GCNGC	3 cut(s)	15, 381, 635
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	3 cut(s)	15, 381, 635
GsaI	CCCAGC	1 cut(s)	211
HapII	CCGG	2 cut(s)	36, 602
HgaI	GACGC	1 cut(s)	665
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	3 cut(s)	203, 368, 443
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HinfI	GANTC	2 cut(s)	137, 357
HpaII	CCGG	2 cut(s)	36, 602
Hpy188I	TCNGA	1 cut(s)	459
Hpy188III	TCNNGA	3 cut(s)	8, 36, 452
Hpy99I	CGWCG	1 cut(s)	681
HpyAV	CCTTC	3 cut(s)	14, 233, 279
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	5 cut(s)	63, 107, 515, 527, 623
Hsp92II	CATG	3 cut(s)	203, 368, 443
HspAI	GCGC	1 cut(s)	378
Kpn2I	TCCGGA	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	6 cut(s)	4, 76, 300, 448, 454, 505
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	1 cut(s)	392
LweI	GCATC	1 cut(s)	514
MaeIII	GTNAC	2 cut(s)	305, 483
MalI	GATC	6 cut(s)	6, 78, 302, 450, 456, 507
MboI	GATC	6 cut(s)	4, 76, 300, 448, 454, 505
MboII	GAAGA	6 cut(s)	269, 307, 310, 335, 593, 655
MfeI	CAATTG	1 cut(s)	108
MflI	RGATCY	1 cut(s)	300
MluCI	AATT	4 cut(s)	24, 102, 108, 282
MnlI	CCTC	3 cut(s)	145, 224, 628
MroI	TCCGGA	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	5 cut(s)	96, 285, 471, 489, 650
MslI	CAYNNNNRTG	2 cut(s)	183, 240
MspI	CCGG	2 cut(s)	36, 602
MspR9I	CCNGG	2 cut(s)	30, 602
MunI	CAATTG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	30
NciI	CCSGG	1 cut(s)	602
NcoI	CCATGG	2 cut(s)	199, 364
NdeII	GATC	6 cut(s)	4, 76, 300, 448, 454, 505
NlaIII	CATG	3 cut(s)	203, 368, 443
NlaIV	GGNNCC	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	305
OliI	CACNNNNGTG	1 cut(s)	240
PctI	GAATGC	1 cut(s)	41
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	137, 357
PkrI	GCNGC	3 cut(s)	16, 382, 636
PshBI	ATTAAT	1 cut(s)	285
PsiI	TTATAA	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	625
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	2 cut(s)	197, 315
RsaNI	GTAC	2 cut(s)	196, 314
RseI	CAYNNNNRTG	2 cut(s)	183, 240
SaqAI	TTAA	5 cut(s)	96, 285, 471, 489, 650
SatI	GCNGC	3 cut(s)	15, 381, 635
Sau3AI	GATC	6 cut(s)	4, 76, 300, 448, 454, 505
ScrFI	CCNGG	2 cut(s)	30, 602
SetI	ASST	9 cut(s)	34, 62, 124, 244, 322, 545, 571, 620, 661
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	1 cut(s)	621
SmiMI	CAYNNNNRTG	2 cut(s)	183, 240
Sse9I	AATT	4 cut(s)	24, 102, 108, 282
SsiI	CCGC	2 cut(s)	181, 634
StyD4I	CCNGG	2 cut(s)	28, 600
StyI	CCWWGG	2 cut(s)	199, 364
TaaI	ACNGT	1 cut(s)	89
TaqI	TCGA	3 cut(s)	453, 504, 679
TasI	AATT	4 cut(s)	24, 102, 108, 282
TatI	WGTACW	1 cut(s)	313
TauI	GCSGC	1 cut(s)	637
TfiI	GAWTC	2 cut(s)	137, 357
Tru1I	TTAA	5 cut(s)	96, 285, 471, 489, 650
Tru9I	TTAA	5 cut(s)	96, 285, 471, 489, 650
TscAI	CASTG	2 cut(s)	94, 451
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	2 cut(s)	14, 380
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	238, 335
TspRI	CASTG	2 cut(s)	94, 451
VspI	ATTAAT	1 cut(s)	285
XapI	RAATTY	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.