Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

13753707 .. 13797536

Gene Structure 43830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG161200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGAAGTCGAAAATTCACAGATTTTAAATCTCCCTGCTGAAATCAAATGTCTAGAGTCTGATGTAGTAATTCACAGCTACCAAATGTCTACAGTGGATGAGAATGTATACTCTAGGTTCAGTTCCGACTACGATTTGGACACCGAAGAATATCTTGGAAGTGGAGCAAATGGAGTTGTAGTTTGCTGCAAGAACCGGTTGGATGAAAAAACGTATGCTATAAAGAAAATCTCAGTATTCGTTGATGAGGATTTCCCATTTGATGAACTCATGAGGGAGGCTGTCATTTTATCCAAGTTCAATAACCCTGCAATTGTCCGATACCATTCGGTATGGATTGAGCCTACTTTTGTTGGCATAACTGGAGATCCTCAAATACCAACGGAAGAGCATCCAGTTGAGACAGACCAACCATGCCTGTACATTCAGCAGGAGCTATGTGACTGCACGGTAGAGCAAAAGATGAAGGCTGGAGCACTTACGCCGGAAGAATGTGCACACATTTTCTTGGAAACCGCAAAAGGCCTGAAACACATTCATGGTCACAATATCATGCATGGAGACATTAAGAAGGCAAATATATTCTTCAGCAACGGCCTGCTGAAAATTGGAGATTTTGGCCTCGCCCAGGAAATAGGCGATGGTACAAATGAGATTAAAACCAGACCTCCATACTCAGCACCTGATGAACTGGTTAATGCAAAAGCTGATGTGTTTAGTTTGGGTATTCTGCTGGTTGAGATGCTACTTAACAGTACTGGAGGACATAAAGCATCTGAGGTAATTTGTATGCTGACAAAACGAGGAAAAGCAGAGCTTCCTGACAGCTGGCCTGATGGCTTACTAAAGACATGGGTGATGAGGATGCTAAAAAAGGAACCATCACAGAGACCTTCATCATCAAGGATAATGAAGAAGAAAGTAGAAATAGAGGATGCTATTCTCAAGTTTCATCTGAAAAAGAAGCAGAAGGTACATGCCACTGCCGAAAAGCAGATTGAAGGTATGCAGCGCAAACACAGGAAGCCTAAGAATGTCAAAGATCACCAGTCTCTTCCACATTATGTGCCGCCGAGAATTGCATGTCCCGACACTGGAGTCACTATCCAGACCTACCAGGTGTCTAATGTTGATATGAGAACCTACTCCAAATTTCGCTCTGAGTATGATGTGGCAGCAGAAGAGTGTATTGGAAAAACTTGCTTCTGGACACATATTTCACTTTCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

410

Amino Acids

46.33

Weight (kDa)

6.04

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	48 - 307	4.6e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	48 - 305	4.5e-23	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1097
AccI	GTMKAC	2 cut(s)	89, 108
AciI	CCGC	2 cut(s)	516, 1070
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	2 cut(s)	13, 1151
AcuI	CTGAAG	1 cut(s)	571
AfaI	GTAC	4 cut(s)	422, 646, 757, 975
AfiI	CCNNNNNNNGG	2 cut(s)	628, 1094
AgeI	ACCGGT	1 cut(s)	195
AgsI	TTSAA	2 cut(s)	301, 1001
AjnI	CCWGG	2 cut(s)	627, 1116
AjuI	GAANNNNNNNTTGG	4 cut(s)	138, 170, 1173, 1205
AluBI	AGCT	5 cut(s)	78, 436, 707, 817, 828
AluI	AGCT	5 cut(s)	78, 436, 707, 817, 828
Alw21I	GWGCWC	2 cut(s)	478, 499
Alw26I	GTCTC	4 cut(s)	395, 555, 883, 1056
Alw44I	GTGCAC	1 cut(s)	495
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	4 cut(s)	523, 595, 619, 830
ApaLI	GTGCAC	1 cut(s)	495
ApeKI	GCWGC	3 cut(s)	186, 1009, 1175
ApoI	RAATTY	2 cut(s)	13, 1151
AsiGI	ACCGGT	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	1014
AsuHPI	GGTGA	2 cut(s)	868, 1037
BaeGI	GKGCMC	1 cut(s)	499
Bbv12I	GWGCWC	2 cut(s)	478, 499
BbvI	GCAGC	3 cut(s)	173, 1021, 1187
BccI	CCATC	3 cut(s)	635, 830, 889
BceAI	ACGGC	1 cut(s)	610
BciT130I	CCWGG	2 cut(s)	629, 1118
BcoDI	GTCTC	4 cut(s)	395, 555, 883, 1056
BfaI	CTAG	2 cut(s)	53, 114
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	4 cut(s)	187, 1010, 1070, 1176
BlsI	GCNGC	4 cut(s)	188, 1011, 1071, 1177
BmcAI	AGTACT	1 cut(s)	757
Bme1390I	CCNGG	2 cut(s)	629, 1118
BmiI	GGNNCC	1 cut(s)	879
BmrFI	CCNGG	2 cut(s)	629, 1118
BmsI	GCATC	5 cut(s)	400, 732, 782, 855, 925
BpmI	CTGGAG	4 cut(s)	384, 492, 780, 1116
BpuEI	CTTGAG	1 cut(s)	929
BsaI	GGTCTC	1 cut(s)	883
BsaJI	CCNNGG	1 cut(s)	627
BsaWI	WCCGGW	1 cut(s)	195
BsaXI	ACNNNNNCTCC	4 cut(s)	165, 195, 652, 682
Bsc4I	CCNNNNNNNGG	2 cut(s)	628, 1094
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	6 cut(s)	367, 395, 696, 763, 1048, 1099
BseBI	CCWGG	2 cut(s)	629, 1118
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	5 cut(s)	103, 208, 391, 870, 940
BseLI	CCNNNNNNNGG	2 cut(s)	628, 1094
BseMII	CTCAG	4 cut(s)	246, 690, 768, 1152
BseNI	ACTGG	6 cut(s)	367, 395, 696, 763, 1048, 1099
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	3 cut(s)	173, 1021, 1187
BsgI	GTGCAG	1 cut(s)	430
BshFI	GGCC	4 cut(s)	525, 597, 621, 832
BshTI	ACCGGT	1 cut(s)	195
BsiHKAI	GWGCWC	2 cut(s)	478, 499
BsiSI	CCGG	2 cut(s)	196, 485
BslFI	GGGAC	1 cut(s)	1071
BslI	CCNNNNNNNGG	2 cut(s)	628, 1094
BsmAI	GTCTC	4 cut(s)	395, 555, 883, 1056
BsmFI	GGGAC	1 cut(s)	1071
BsnI	GGCC	4 cut(s)	525, 597, 621, 832
Bso31I	GGTCTC	1 cut(s)	883
Bsp1286I	GDGCHC	2 cut(s)	478, 499
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	367, 1042
BspACI	CCGC	2 cut(s)	516, 1070
BspANI	GGCC	4 cut(s)	525, 597, 621, 832
BspCNI	CTCAG	4 cut(s)	245, 689, 769, 1153
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	879
BspPI	GGATC	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	381
BspTNI	GGTCTC	1 cut(s)	883
BsrFI	RCCGGY	1 cut(s)	195
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	6 cut(s)	367, 395, 696, 763, 1048, 1099
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	2 cut(s)	367, 1042
BssNAI	GTATAC	1 cut(s)	109
Bst1107I	GTATAC	1 cut(s)	109
Bst2UI	CCWGG	2 cut(s)	629, 1118
Bst4CI	ACNGT	3 cut(s)	94, 451, 755
Bst6I	CTCTTC	3 cut(s)	381, 1059, 1176
BstAUI	TGTACA	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	599, 830
BstDEI	CTNAG	5 cut(s)	232, 676, 777, 1029, 1161
BstENI	CCTNNNNNAGG	1 cut(s)	626
BstF5I	GGATG	5 cut(s)	103, 208, 391, 870, 940
BstHHI	GCGC	1 cut(s)	1014
BstKTI	GATC	2 cut(s)	370, 1045
BstMAI	GTCTC	4 cut(s)	395, 555, 883, 1056
BstMBI	GATC	2 cut(s)	367, 1042
BstNI	CCWGG	2 cut(s)	629, 1118
BstNSI	RCATGY	2 cut(s)	980, 1086
BstSCI	CCNGG	2 cut(s)	627, 1116
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	3 cut(s)	173, 1021, 1187
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BstZ17I	GTATAC	1 cut(s)	109
BsuRI	GGCC	4 cut(s)	525, 597, 621, 832
BtgZI	GCGATG	1 cut(s)	654
BtsCI	GGATG	5 cut(s)	103, 208, 391, 870, 940
BtsI	GCAGTG	1 cut(s)	981
BtsIMutI	CAGTG	3 cut(s)	99, 981, 1092
Cac8I	GCNNGC	2 cut(s)	599, 830
CaiI	CAGNNNCTG	1 cut(s)	683
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	1 cut(s)	1014
Cfr10I	RCCGGY	1 cut(s)	195
CsiI	ACCWGGT	1 cut(s)	1116
Csp6I	GTAC	4 cut(s)	421, 645, 756, 974
CspAI	ACCGGT	1 cut(s)	195
CviAII	CATG	8 cut(s)	271, 414, 539, 553, 557, 852, 977, 1083
CviQI	GTAC	4 cut(s)	421, 645, 756, 974
DdeI	CTNAG	5 cut(s)	232, 676, 777, 1029, 1161
DpnI	GATC	2 cut(s)	369, 1044
DpnII	GATC	2 cut(s)	367, 1042
DraI	TTTAAA	1 cut(s)	27
DrdI	GACNNNNNNGTC	1 cut(s)	1097
DseDI	GACNNNNNNGTC	1 cut(s)	1097
Eam1104I	CTCTTC	3 cut(s)	381, 1059, 1176
EarI	CTCTTC	3 cut(s)	381, 1059, 1176
Eco147I	AGGCCT	1 cut(s)	525
Eco31I	GGTCTC	1 cut(s)	883
Eco57I	CTGAAG	1 cut(s)	571
EcoNI	CCTNNNNNAGG	1 cut(s)	626
EcoRII	CCWGG	2 cut(s)	627, 1116
EcoT22I	ATGCAT	1 cut(s)	558
FaeI	CATG	8 cut(s)	274, 417, 542, 556, 560, 855, 980, 1086
FalI	AAGNNNNNCTT	4 cut(s)	138, 170, 801, 833
FaqI	GGGAC	1 cut(s)	1071
FatI	CATG	8 cut(s)	270, 413, 538, 552, 556, 851, 976, 1082
FblI	GTMKAC	2 cut(s)	89, 108
Fnu4HI	GCNGC	4 cut(s)	187, 1010, 1070, 1176
FokI	GGATG	5 cut(s)	110, 215, 378, 877, 947
Fsp4HI	GCNGC	4 cut(s)	187, 1010, 1070, 1176
FspBI	CTAG	2 cut(s)	53, 114
GlaI	GCGC	1 cut(s)	1013
GluI	GCNGC	4 cut(s)	187, 1010, 1070, 1176
GsuI	CTGGAG	4 cut(s)	384, 492, 780, 1116
HaeIII	GGCC	4 cut(s)	525, 597, 621, 832
HapII	CCGG	2 cut(s)	196, 485
HhaI	GCGC	1 cut(s)	1014
Hin1II	CATG	8 cut(s)	274, 417, 542, 556, 560, 855, 980, 1086
Hin6I	GCGC	1 cut(s)	1012
HinP1I	GCGC	1 cut(s)	1012
HinfI	GANTC	2 cut(s)	56, 1098
HpaII	CCGG	2 cut(s)	196, 485
HphI	GGTGA	2 cut(s)	868, 1037
Hpy166II	GTNNAC	3 cut(s)	90, 109, 497
Hpy188I	TCNGA	6 cut(s)	61, 127, 320, 778, 957, 1162
Hpy188III	TCNNGA	6 cut(s)	53, 271, 821, 1088, 1108, 1207
Hpy8I	GTNNAC	3 cut(s)	90, 109, 497
HpyAV	CCTTC	5 cut(s)	460, 565, 903, 964, 995
HpyCH4III	ACNGT	3 cut(s)	94, 451, 755
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	8 cut(s)	189, 311, 447, 497, 556, 701, 1009, 1082
HpyF3I	CTNAG	5 cut(s)	232, 676, 777, 1029, 1161
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	8 cut(s)	274, 417, 542, 556, 560, 855, 980, 1086
HspAI	GCGC	1 cut(s)	1012
Kzo9I	GATC	2 cut(s)	367, 1042
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	3 cut(s)	164, 433, 473
Lsp1109I	GCAGC	3 cut(s)	173, 1021, 1187
LweI	GCATC	5 cut(s)	400, 732, 782, 855, 925
MabI	ACCWGGT	1 cut(s)	1116
MaeI	CTAG	2 cut(s)	53, 114
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	3 cut(s)	440, 542, 1099
MalI	GATC	2 cut(s)	369, 1044
MboI	GATC	2 cut(s)	367, 1042
MboII	GAAGA	8 cut(s)	158, 398, 500, 577, 925, 928, 1046, 1193
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	2 cut(s)	478, 499
MluCI	AATT	7 cut(s)	13, 69, 312, 606, 783, 1077, 1151
MlyI	GAGTC	2 cut(s)	65, 1107
MmeI	TCCRAC	2 cut(s)	150, 180
Mph1103I	ATGCAT	1 cut(s)	558
MseI	TTAA	6 cut(s)	26, 567, 657, 696, 750, 1231
MslI	CAYNNNNRTG	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	828
MspI	CCGG	2 cut(s)	196, 485
MspR9I	CCNGG	2 cut(s)	629, 1118
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	2 cut(s)	629, 1118
NdeII	GATC	2 cut(s)	367, 1042
NlaIII	CATG	8 cut(s)	274, 417, 542, 556, 560, 855, 980, 1086
NlaIV	GGNNCC	1 cut(s)	879
NmeAIII	GCCGAG	1 cut(s)	1098
NmuCI	GTSAC	3 cut(s)	440, 542, 1099
NsiI	ATGCAT	1 cut(s)	558
NspI	RCATGY	2 cut(s)	980, 1086
PagI	TCATGA	1 cut(s)	270
PceI	AGGCCT	1 cut(s)	525
PciSI	GCTCTTC	1 cut(s)	381
PinAI	ACCGGT	1 cut(s)	195
PkrI	GCNGC	4 cut(s)	188, 1011, 1071, 1177
PleI	GAGTC	2 cut(s)	64, 1106
PpsI	GAGTC	2 cut(s)	64, 1106
Psp6I	CCWGG	2 cut(s)	627, 1116
PspGI	CCWGG	2 cut(s)	627, 1116
PspN4I	GGNNCC	1 cut(s)	879
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	828
RsaI	GTAC	4 cut(s)	422, 646, 757, 975
RsaNI	GTAC	4 cut(s)	421, 645, 756, 974
RseI	CAYNNNNRTG	1 cut(s)	537
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	6 cut(s)	26, 567, 657, 696, 750, 1231
SatI	GCNGC	4 cut(s)	187, 1010, 1070, 1176
Sau3AI	GATC	2 cut(s)	367, 1042
ScaI	AGTACT	1 cut(s)	757
SchI	GAGTC	2 cut(s)	65, 1107
ScrFI	CCNGG	2 cut(s)	629, 1118
SduI	GDGCHC	2 cut(s)	478, 499
SexAI	ACCWGGT	1 cut(s)	1116
SfaNI	GCATC	5 cut(s)	400, 732, 782, 855, 925
SfcI	CTRYAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	537
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
Sse9I	AATT	7 cut(s)	13, 69, 312, 606, 783, 1077, 1151
SseBI	AGGCCT	1 cut(s)	525
SsiI	CCGC	2 cut(s)	516, 1070
SspMI	CTAG	2 cut(s)	53, 114
StuI	AGGCCT	1 cut(s)	525
StyD4I	CCNGG	2 cut(s)	627, 1116
TaaI	ACNGT	3 cut(s)	94, 451, 755
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	9
TasI	AATT	7 cut(s)	13, 69, 312, 606, 783, 1077, 1151
TatI	WGTACW	2 cut(s)	420, 755
TauI	GCSGC	1 cut(s)	1072
Tru1I	TTAA	6 cut(s)	26, 567, 657, 696, 750, 1231
Tru9I	TTAA	6 cut(s)	26, 567, 657, 696, 750, 1231
TscAI	CASTG	3 cut(s)	99, 988, 1099
TseFI	GTSAC	3 cut(s)	440, 542, 1099
TseI	GCWGC	3 cut(s)	186, 1009, 1175
Tsp45I	GTSAC	3 cut(s)	440, 542, 1099
TspDTI	ATGAA	8 cut(s)	219, 279, 479, 527, 702, 885, 926, 941
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	3 cut(s)	99, 988, 1099
VneI	GTGCAC	1 cut(s)	495
XagI	CCTNNNNNAGG	1 cut(s)	626
XapI	RAATTY	2 cut(s)	13, 1151
XbaI	TCTAGA	1 cut(s)	52
XceI	RCATGY	2 cut(s)	980, 1086
XmiI	GTMKAC	2 cut(s)	89, 108
XspI	CTAG	2 cut(s)	53, 114
ZrmI	AGTACT	1 cut(s)	757
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.