Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

12509096 .. 12510682

Gene Structure 1587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAGGGAGGCTGTCATTTTATCCAAGTTCAATAACCCTGCAATTGTCCGATACCATTCGGTATGGATTGAGCCTACTTTTGTTGGCATAACTGGAGATCCTCAAATACCAACGGAAGAGCATCCAGTTGAGACAGACCAACCATGCCTGTACATTCAGCAGGAGCTATGTGACTGCACGGTAGGGCAAAAGATGAAGGCTGGAGCACTTACGCTGGAAGAATGTGCACACATTTTCTTGGAAACCGCAAAAGGCCTGAAACACATTCATGGTCACAATATCATGCATGGAGACATTAAGAAGGCAAATATATTCTTCAGCAACGGCCTGCTGAAAATTGGAGATTTTGGCCTCGCCCAGGAAATAGGCGATGGTACAAATGAGATTACAACCAGACCTCCATACTCAGCACCTGATGAACTGGTTAATGCAAAAGCTGATGTGTTTAGTTTGGGTATTCTGCTGGTTGAGATGCTACTTAACAGTACTGGAGGACATAAAGCATCTGAGGTAATTCGTATGCTGACAAAACGAGGAAAAGCAGAGCTTCCTGACAGCTGGCCTGATGGCTTACTAAAGACATGGGTGATGAGGATGCTAAAAAAGGAACCATCACAGAGACCTTCATCATCAAGGATAAGGAAGAAACAAGTAGAAATAGAGAATGCTATTCTCAAGTTTCATCTGAAAAAGAAGCAGAAGGTACATGCTACTGCCGAAAAGCAGATTGAAGGTATGCAGCGCAAACACAGGAAGCCTAAGAATGTCAAAGGTCAAGTTCAAAGACACAGAAGGCATAGTCTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

269

Amino Acids

30.38

Weight (kDa)

9.48

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 216	1.3e-28	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	55 - 215	2.7e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	802
AciI	CCGC	1 cut(s)	246
AclWI	GGATC	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	301
AfaI	GTAC	4 cut(s)	152, 376, 487, 705
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	3 cut(s)	31, 731, 782
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	4 cut(s)	166, 437, 547, 558
AluI	AGCT	4 cut(s)	166, 437, 547, 558
Alw21I	GWGCWC	2 cut(s)	208, 229
Alw26I	GTCTC	3 cut(s)	125, 285, 613
Alw44I	GTGCAC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	92
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	4 cut(s)	253, 325, 349, 560
ApaLI	GTGCAC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	739
AspLEI	GCGC	1 cut(s)	744
AsuHPI	GGTGA	1 cut(s)	598
BaeGI	GKGCMC	1 cut(s)	229
Bbv12I	GWGCWC	2 cut(s)	208, 229
BbvI	GCAGC	1 cut(s)	751
BccI	CCATC	3 cut(s)	365, 560, 619
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	359
BcoDI	GTCTC	3 cut(s)	125, 285, 613
BisI	GCNGC	1 cut(s)	740
BlsI	GCNGC	1 cut(s)	741
BmcAI	AGTACT	1 cut(s)	487
Bme1390I	CCNGG	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	609
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	4 cut(s)	130, 462, 512, 585
BpmI	CTGGAG	3 cut(s)	114, 222, 510
BpuEI	CTTGAG	1 cut(s)	659
BsaI	GGTCTC	1 cut(s)	613
BsaJI	CCNNGG	1 cut(s)	357
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	4 cut(s)	97, 125, 426, 493
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	2 cut(s)	121, 600
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	2 cut(s)	420, 498
BseNI	ACTGG	4 cut(s)	97, 125, 426, 493
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	751
BsgI	GTGCAG	1 cut(s)	160
BshFI	GGCC	4 cut(s)	255, 327, 351, 562
BsiHKAI	GWGCWC	2 cut(s)	208, 229
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	3 cut(s)	125, 285, 613
BsmI	GAATGC	1 cut(s)	670
BsnI	GGCC	4 cut(s)	255, 327, 351, 562
Bso31I	GGTCTC	1 cut(s)	613
Bsp1286I	GDGCHC	2 cut(s)	208, 229
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	97
BspACI	CCGC	1 cut(s)	246
BspANI	GGCC	4 cut(s)	255, 327, 351, 562
BspCNI	CTCAG	2 cut(s)	419, 499
BspLI	GGNNCC	1 cut(s)	609
BspPI	GGATC	1 cut(s)	92
BspQI	GCTCTTC	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	613
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	4 cut(s)	97, 125, 426, 493
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	3 cut(s)	181, 485, 807
Bst6I	CTCTTC	1 cut(s)	111
BstAUI	TGTACA	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	329, 560
BstDEI	CTNAG	3 cut(s)	406, 507, 759
BstENI	CCTNNNNNAGG	1 cut(s)	356
BstF5I	GGATG	2 cut(s)	121, 600
BstHHI	GCGC	1 cut(s)	744
BstKTI	GATC	1 cut(s)	100
BstMAI	GTCTC	3 cut(s)	125, 285, 613
BstMBI	GATC	1 cut(s)	97
BstNI	CCWGG	1 cut(s)	359
BstNSI	RCATGY	1 cut(s)	710
BstSCI	CCNGG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	751
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	4 cut(s)	255, 327, 351, 562
BtgZI	GCGATG	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	121, 600
Cac8I	GCNNGC	2 cut(s)	329, 560
CaiI	CAGNNNCTG	1 cut(s)	413
CfoI	GCGC	1 cut(s)	744
Csp6I	GTAC	4 cut(s)	151, 375, 486, 704
CviAII	CATG	6 cut(s)	144, 269, 283, 287, 582, 707
CviQI	GTAC	4 cut(s)	151, 375, 486, 704
DdeI	CTNAG	3 cut(s)	406, 507, 759
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	301
EcoNI	CCTNNNNNAGG	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	357
EcoT22I	ATGCAT	1 cut(s)	288
FaeI	CATG	6 cut(s)	147, 272, 286, 290, 585, 710
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FatI	CATG	6 cut(s)	143, 268, 282, 286, 581, 706
FblI	GTMKAC	1 cut(s)	802
Fnu4HI	GCNGC	1 cut(s)	740
FokI	GGATG	2 cut(s)	108, 607
Fsp4HI	GCNGC	1 cut(s)	740
GlaI	GCGC	1 cut(s)	743
GluI	GCNGC	1 cut(s)	740
GsuI	CTGGAG	3 cut(s)	114, 222, 510
HaeIII	GGCC	4 cut(s)	255, 327, 351, 562
HhaI	GCGC	1 cut(s)	744
Hin1II	CATG	6 cut(s)	147, 272, 286, 290, 585, 710
Hin6I	GCGC	1 cut(s)	742
HinP1I	GCGC	1 cut(s)	742
HphI	GGTGA	1 cut(s)	598
Hpy166II	GTNNAC	2 cut(s)	227, 803
Hpy188I	TCNGA	3 cut(s)	50, 508, 687
Hpy188III	TCNNGA	1 cut(s)	551
Hpy8I	GTNNAC	2 cut(s)	227, 803
HpyAV	CCTTC	6 cut(s)	190, 295, 633, 694, 725, 786
HpyCH4III	ACNGT	3 cut(s)	181, 485, 807
HpyCH4V	TGCA	6 cut(s)	41, 177, 227, 286, 431, 739
HpyF3I	CTNAG	3 cut(s)	406, 507, 759
Hsp92II	CATG	6 cut(s)	147, 272, 286, 290, 585, 710
HspAI	GCGC	1 cut(s)	742
Kzo9I	GATC	1 cut(s)	97
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	2 cut(s)	163, 203
Lsp1109I	GCAGC	1 cut(s)	751
LweI	GCATC	4 cut(s)	130, 462, 512, 585
MaeIII	GTNAC	2 cut(s)	170, 272
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	4 cut(s)	128, 230, 307, 655
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	2 cut(s)	208, 229
MluCI	AATT	3 cut(s)	42, 336, 513
MnlI	CCTC	7 cut(s)	111, 362, 408, 485, 502, 527, 585
Mph1103I	ATGCAT	1 cut(s)	288
MseI	TTAA	3 cut(s)	297, 426, 480
MslI	CAYNNNNRTG	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	558
MspR9I	CCNGG	1 cut(s)	359
MunI	CAATTG	1 cut(s)	42
Mva1269I	GAATGC	1 cut(s)	670
MvaI	CCWGG	1 cut(s)	359
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	6 cut(s)	147, 272, 286, 290, 585, 710
NlaIV	GGNNCC	1 cut(s)	609
NmuCI	GTSAC	2 cut(s)	170, 272
NsiI	ATGCAT	1 cut(s)	288
NspI	RCATGY	1 cut(s)	710
PceI	AGGCCT	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	111
PctI	GAATGC	1 cut(s)	670
PkrI	GCNGC	1 cut(s)	741
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	609
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	558
RsaI	GTAC	4 cut(s)	152, 376, 487, 705
RsaNI	GTAC	4 cut(s)	151, 375, 486, 704
RseI	CAYNNNNRTG	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	297, 426, 480
SatI	GCNGC	1 cut(s)	740
Sau3AI	GATC	1 cut(s)	97
ScaI	AGTACT	1 cut(s)	487
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	2 cut(s)	208, 229
SfaNI	GCATC	4 cut(s)	130, 462, 512, 585
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	3 cut(s)	42, 336, 513
SseBI	AGGCCT	1 cut(s)	255
SsiI	CCGC	1 cut(s)	246
StuI	AGGCCT	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	3 cut(s)	181, 485, 807
TasI	AATT	3 cut(s)	42, 336, 513
TatI	WGTACW	2 cut(s)	150, 485
Tru1I	TTAA	3 cut(s)	297, 426, 480
Tru9I	TTAA	3 cut(s)	297, 426, 480
TseFI	GTSAC	2 cut(s)	170, 272
TseI	GCWGC	1 cut(s)	739
Tsp45I	GTSAC	2 cut(s)	170, 272
TspDTI	ATGAA	5 cut(s)	209, 257, 432, 615, 671
TspGWI	ACGGA	1 cut(s)	128
VneI	GTGCAC	1 cut(s)	225
XagI	CCTNNNNNAGG	1 cut(s)	356
XceI	RCATGY	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	802
ZrmI	AGTACT	1 cut(s)	487
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.