Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Reverse (-)

14773370 .. 14775306

Gene Structure 1937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG165200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGATCAAGATGCTGCTGAAGGAATTCCAGATGGCTTTGAAGTGCTTACAGAGATCAAATGTCCATCAAGTGGGAAGAAGATCTACTCTAACCTAGTCTTGAGTACTGACAAGACACCCTCTTGGTATTTGTCCAACTATGAGGAAATTGAAATACTCTGTTCCGGAGCATTCGGGGTTGTGGCAAGGTGCAAAAACAAGTTTGATCAAAAGCACAGTGCTATTAAGAAAATTGCAATTGGCTCAACACCTGATGATTGCTTTGAATCTGTTATAAGGGAGGCACGCATTTGGTCTCTGCTTGACCACCGCAATGTAGTCAAGTACCATGGGTGCTGGGTTGAGACGGCATTTTGGGGAGGACACGAAGGTGGTTTCATCGCTGAAGAGAAAAAGCCTTGTTTGTATCTGAAGCTGGAAGCCTGCGACAGTTCTTTAGCTGCCCAAACAATTAATGATTTGAAGAAGATCTGTGACATAGTACAAGCTGTATTGAAGGGACTTGTTTATCTTCATTCAAAGGGAATCGTCCATGGAGATATTAGAGCAGCAAACATTTTGATTAGTGATGGAAAAGCCAAAATATGTGATTTTGGACGAGCCAGTCATGGCACTGATCTCGATCAGAAACAGGACATTAAGAAGTTTGGGTTACTTATTGTTGAAATGCTCGATCCAAGTGCATTGCCAGATGCAAGATTACGAAGCAGGTTTCCTAAAGAGTTCAAGGCATTAGCTGAACAACTTGAAGAGATGACAGCCCCCAACCCGGAGACACGACCAACCTCTGCAGAACTTCTGCGGCATAAGAAGAAGTTAATCAAAGCTATAATGGGGATAGAGCTTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04138 ko04140 ko04141 ko05160 ko05162 ko05164 ko05168 ko05169 map04138 map04140 map04141 map05160 map05162 map05164 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

283

Amino Acids

31.52

Weight (kDa)

7.06

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	47 - 205	2e-27	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	51 - 209	3.3e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
AasI	GACNNNNNNGTC	1 cut(s)	603
Acc36I	ACCTGC	1 cut(s)	699
AccB7I	CCANNNNNTGG	1 cut(s)	71
AccIII	TCCGGA	1 cut(s)	164
AciI	CCGC	2 cut(s)	310, 802
AclWI	GGATC	2 cut(s)	12, 668
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	3 cut(s)	39, 405, 431
AfaI	GTAC	3 cut(s)	106, 326, 483
AfiI	CCNNNNNNNGG	2 cut(s)	71, 769
AgsI	TTSAA	9 cut(s)	41, 152, 266, 463, 496, 519, 665, 727, 749
AleI	CACNNNNGTG	1 cut(s)	369
AluBI	AGCT	6 cut(s)	415, 440, 488, 737, 827, 844
AluI	AGCT	6 cut(s)	415, 440, 488, 737, 827, 844
Alw26I	GTCTC	3 cut(s)	300, 338, 767
AlwI	GGATC	2 cut(s)	12, 668
Aor13HI	TCCGGA	1 cut(s)	164
ApeKI	GCWGC	3 cut(s)	14, 440, 548
ApoI	RAATTY	1 cut(s)	24
AseI	ATTAAT	1 cut(s)	453
Asp700I	GAANNNNTTC	1 cut(s)	24
AsuC2I	CCSGG	1 cut(s)	770
BarI	GAAGNNNNNNTAC	2 cut(s)	68, 100
BbvI	GCAGC	2 cut(s)	427, 560
BccI	CCATC	3 cut(s)	26, 73, 563
BceAI	ACGGC	1 cut(s)	363
BcgI	CGANNNNNNTGC	4 cut(s)	601, 635, 662, 696
BclI	TGATCA	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	770
BcoDI	GTCTC	3 cut(s)	300, 338, 767
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	789
BfuAI	ACCTGC	1 cut(s)	699
BglII	AGATCT	2 cut(s)	81, 468
BisI	GCNGC	4 cut(s)	15, 441, 549, 803
BlsI	GCNGC	4 cut(s)	16, 442, 550, 804
BmcAI	AGTACT	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	770
BmrFI	CCNGG	1 cut(s)	770
BmsI	GCATC	1 cut(s)	682
BpuEI	CTTGAG	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	770
BsaBI	GATNNNNATC	1 cut(s)	621
BsaI	GGTCTC	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	328, 532
BsaWI	WCCGGW	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 769
Bse1I	ACTGG	1 cut(s)	603
Bse3DI	GCAATG	2 cut(s)	319, 683
Bse8I	GATNNNNATC	1 cut(s)	621
BseAI	TCCGGA	1 cut(s)	164
BseDI	CCNNGG	2 cut(s)	328, 532
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	2 cut(s)	71, 769
BseMI	GCAATG	2 cut(s)	319, 683
BseNI	ACTGG	1 cut(s)	603
BseXI	GCAGC	2 cut(s)	427, 560
BseYI	CCCAGC	1 cut(s)	336
BsiSI	CCGG	2 cut(s)	165, 770
BslFI	GGGAC	1 cut(s)	513
BslI	CCNNNNNNNGG	2 cut(s)	71, 769
BsmAI	GTCTC	3 cut(s)	300, 338, 767
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	513
BsmI	GAATGC	1 cut(s)	170
Bso31I	GGTCTC	1 cut(s)	300
Bsp13I	TCCGGA	1 cut(s)	164
Bsp143I	GATC	8 cut(s)	4, 54, 81, 205, 468, 616, 622, 673
Bsp19I	CCATGG	2 cut(s)	328, 532
BspACI	CCGC	2 cut(s)	310, 802
BspEI	TCCGGA	1 cut(s)	164
BspMAI	CTGCAG	1 cut(s)	793
BspMI	ACCTGC	1 cut(s)	699
BspPI	GGATC	2 cut(s)	12, 668
BspTNI	GGTCTC	1 cut(s)	300
BsrDI	GCAATG	2 cut(s)	319, 683
BsrI	ACTGG	1 cut(s)	603
BssECI	CCNNGG	2 cut(s)	328, 532
BssMI	GATC	8 cut(s)	4, 54, 81, 205, 468, 616, 622, 673
BssT1I	CCWWGG	2 cut(s)	328, 532
Bst4CI	ACNGT	2 cut(s)	218, 431
Bst6I	CTCTTC	2 cut(s)	381, 744
BstC8I	GCNNGC	2 cut(s)	286, 424
BstDSI	CCRYGG	2 cut(s)	328, 532
BstKTI	GATC	8 cut(s)	7, 57, 84, 208, 471, 619, 625, 676
BstMAI	GTCTC	3 cut(s)	300, 338, 767
BstMBI	GATC	8 cut(s)	4, 54, 81, 205, 468, 616, 622, 673
BstSCI	CCNGG	1 cut(s)	768
BstSFI	CTRYAG	1 cut(s)	789
BstV1I	GCAGC	2 cut(s)	427, 560
BstX2I	RGATCY	2 cut(s)	81, 468
BstYI	RGATCY	2 cut(s)	81, 468
BtgI	CCRYGG	2 cut(s)	328, 532
BtgZI	GCGATG	1 cut(s)	364
BtsIMutI	CAGTG	2 cut(s)	223, 612
BveI	ACCTGC	1 cut(s)	699
Cac8I	GCNNGC	2 cut(s)	286, 424
Csp6I	GTAC	3 cut(s)	105, 325, 482
CviAII	CATG	3 cut(s)	329, 533, 608
CviQI	GTAC	3 cut(s)	105, 325, 482
DpnI	GATC	8 cut(s)	6, 56, 83, 207, 470, 618, 624, 675
DpnII	GATC	8 cut(s)	4, 54, 81, 205, 468, 616, 622, 673
DrdI	GACNNNNNNGTC	1 cut(s)	603
DseDI	GACNNNNNNGTC	1 cut(s)	603
Eam1104I	CTCTTC	2 cut(s)	381, 744
EarI	CTCTTC	2 cut(s)	381, 744
Eco130I	CCWWGG	2 cut(s)	328, 532
Eco31I	GGTCTC	1 cut(s)	300
Eco57I	CTGAAG	3 cut(s)	39, 405, 431
EcoRI	GAATTC	1 cut(s)	24
EcoT14I	CCWWGG	2 cut(s)	328, 532
ErhI	CCWWGG	2 cut(s)	328, 532
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	3 cut(s)	332, 536, 611
FaiI	YATR	9 cut(s)	141, 275, 330, 479, 534, 586, 609, 807, 830
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	3 cut(s)	328, 532, 607
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	4 cut(s)	15, 441, 549, 803
Fsp4HI	GCNGC	4 cut(s)	15, 441, 549, 803
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	4 cut(s)	15, 441, 549, 803
GsaI	CCCAGC	1 cut(s)	340
HapII	CCGG	2 cut(s)	165, 770
Hin1II	CATG	3 cut(s)	332, 536, 611
HinfI	GANTC	2 cut(s)	266, 525
HpaII	CCGG	2 cut(s)	165, 770
Hpy188I	TCNGA	2 cut(s)	411, 627
Hpy188III	TCNNGA	5 cut(s)	8, 29, 100, 165, 620
HpyAV	CCTTC	3 cut(s)	14, 362, 490
HpyCH4III	ACNGT	2 cut(s)	218, 431
HpyCH4V	TGCA	5 cut(s)	192, 236, 683, 695, 791
Hsp92II	CATG	3 cut(s)	332, 536, 611
Kpn2I	TCCGGA	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	8 cut(s)	4, 54, 81, 205, 468, 616, 622, 673
LmnI	GCTCC	1 cut(s)	167
Lsp1109I	GCAGC	2 cut(s)	427, 560
LweI	GCATC	1 cut(s)	682
MaeI	CTAG	1 cut(s)	95
MaeIII	GTNAC	2 cut(s)	473, 651
MalI	GATC	8 cut(s)	6, 56, 83, 207, 470, 618, 624, 675
MboI	GATC	8 cut(s)	4, 54, 81, 205, 468, 616, 622, 673
MboII	GAAGA	8 cut(s)	88, 91, 398, 475, 478, 503, 761, 823
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	2 cut(s)	81, 468
MluCI	AATT	5 cut(s)	24, 147, 231, 237, 450
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	5 cut(s)	130, 136, 274, 353, 796
MroI	TCCGGA	1 cut(s)	164
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	4 cut(s)	225, 453, 639, 818
MslI	CAYNNNNRTG	2 cut(s)	312, 369
MspI	CCGG	2 cut(s)	165, 770
MspR9I	CCNGG	1 cut(s)	770
MunI	CAATTG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	170
NciI	CCSGG	1 cut(s)	770
NcoI	CCATGG	2 cut(s)	328, 532
NdeII	GATC	8 cut(s)	4, 54, 81, 205, 468, 616, 622, 673
NlaIII	CATG	3 cut(s)	332, 536, 611
NmuCI	GTSAC	1 cut(s)	473
OliI	CACNNNNGTG	1 cut(s)	369
PctI	GAATGC	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	266, 525
PflMI	CCANNNNNTGG	1 cut(s)	71
PkrI	GCNGC	4 cut(s)	16, 442, 550, 804
PshBI	ATTAAT	1 cut(s)	453
PsiI	TTATAA	1 cut(s)	275
PspFI	CCCAGC	1 cut(s)	336
PstI	CTGCAG	1 cut(s)	793
PsuI	RGATCY	2 cut(s)	81, 468
RsaI	GTAC	3 cut(s)	106, 326, 483
RsaNI	GTAC	3 cut(s)	105, 325, 482
RseI	CAYNNNNRTG	2 cut(s)	312, 369
SaqAI	TTAA	4 cut(s)	225, 453, 639, 818
SatI	GCNGC	4 cut(s)	15, 441, 549, 803
Sau3AI	GATC	8 cut(s)	4, 54, 81, 205, 468, 616, 622, 673
ScaI	AGTACT	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	770
SfaNI	GCATC	1 cut(s)	682
SfcI	CTRYAG	1 cut(s)	789
SmiMI	CAYNNNNRTG	2 cut(s)	312, 369
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	5 cut(s)	24, 147, 231, 237, 450
SsiI	CCGC	2 cut(s)	310, 802
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	768
StyI	CCWWGG	2 cut(s)	328, 532
TaaI	ACNGT	2 cut(s)	218, 431
TaqI	TCGA	3 cut(s)	621, 672, 847
TasI	AATT	5 cut(s)	24, 147, 231, 237, 450
TatI	WGTACW	2 cut(s)	104, 481
TauI	GCSGC	1 cut(s)	805
TfiI	GAWTC	2 cut(s)	266, 525
Tru1I	TTAA	4 cut(s)	225, 453, 639, 818
Tru9I	TTAA	4 cut(s)	225, 453, 639, 818
TscAI	CASTG	2 cut(s)	223, 619
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	3 cut(s)	14, 440, 548
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	2 cut(s)	367, 503
TspRI	CASTG	2 cut(s)	223, 619
Van91I	CCANNNNNTGG	1 cut(s)	71
VspI	ATTAAT	1 cut(s)	453
XapI	RAATTY	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	1 cut(s)	95
ZrmI	AGTACT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.