Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

13455472 .. 13457769

Gene Structure 2298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017153

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAAGTCACGAATCCTAATCCAATTCCATATGTGCCGCCGAGAATTGCATGTCCCGACACTGGAGTCACTATCCAGACCTACCAGGTGTCTAATGTTGATATGAGAACCTACTCCAAATTATGGGCTGGCGCATTCGGCGTTGTCGTTCGGTGCAAGAACCTGATAGACAACCAAAATTATGCCATAAAGAAAATATCAATTGGTAAGAGGGGTAATATTGATCGATATGGCAACTACAGAGACCTATTAAGTCTTATCATTTTAGCCACATTTGATCATCCGGCTGTTGTTCGGTATCACTCGACCTGGATGGAGTGCACTTTTGTTGGCACTACTGGAGGTGAACCTGATATTGTGAAAACCAATCCATGTCTTTACATACAACAGCAACTATGTGAGAGCACGTTGGAGCAAAAGATGAGTACCAAACTTTCAAAGGAAGAACGTGCAGTCATTTTCTCACAGGTGGCACGCGGCCTAGCACACATCCACAGTCACAACGTAATGCATGGTGATCTTGGCAGAGGAAATATATTCTTGTGCAAGAACCAAGCAAAGATTGGAGATTTTGGACTTTCCCGGATCATAGGTGAAGGTGATGATGTAATTCATTTAGGAAATCCCCCACCTCAATACGCCCCACCTGATAAATGTGTCAATGCAAATGCGGACGTGTACAGTCTGGGGATTCTGCTGGTGCAGATGCTTCTCAACATCAGAACAGATTCAGAAGCATCAACGGTGTTTCGTGACCTGAAAAAAGAAGAACCAGTGTTTCCTGTCTCCTGGCCTAACGGCGTGCTGAAGACTTGGGTGACGAACATGCTAAAAAGAAATCCATCAGACAGACCTTCATCAGCAGATATCGTGGAGAATCTAGACAAGATAGGTGATGCTATTCGGGAGTTTGTTTTTTTAAAGCAACAGCAGGTATTGGGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

316

Amino Acids

35.19

Weight (kDa)

8.1

Isoelectric Point (pI)

33.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	38 - 292	1.4e-29	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	38 - 294	3.1e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	922
AccB7I	CCANNNNNTGG	1 cut(s)	123
AccII	CGCG	1 cut(s)	477
AciI	CCGC	3 cut(s)	38, 477, 671
AclWI	GGATC	1 cut(s)	593
AcuI	CTGAAG	1 cut(s)	827
AfaI	GTAC	2 cut(s)	427, 680
AfiI	CCNNNNNNNGG	2 cut(s)	62, 123
AflIII	ACRYGT	1 cut(s)	675
AgsI	TTSAA	1 cut(s)	438
AjiI	CACGTC	1 cut(s)	676
AjnI	CCWGG	3 cut(s)	84, 308, 788
Alw21I	GWGCWC	2 cut(s)	323, 407
Alw26I	GTCTC	2 cut(s)	237, 790
Alw44I	GTGCAC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	593
AoxI	GGCC	2 cut(s)	478, 791
ApaLI	GTGCAC	1 cut(s)	319
Asp700I	GAANNNNTTC	1 cut(s)	727
AspLEI	GCGC	1 cut(s)	134
AsuC2I	CCSGG	1 cut(s)	583
AsuHPI	GGTGA	6 cut(s)	356, 527, 605, 611, 829, 905
BaeGI	GKGCMC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	815
Bbv12I	GWGCWC	2 cut(s)	323, 407
BccI	CCATC	2 cut(s)	307, 850
BceAI	ACGGC	1 cut(s)	814
BciT130I	CCWGG	3 cut(s)	86, 310, 790
BclI	TGATCA	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	583
BcoDI	GTCTC	2 cut(s)	237, 790
BfaI	CTAG	2 cut(s)	482, 881
BfmI	CTRYAG	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	922
BisI	GCNGC	2 cut(s)	38, 478
BlsI	GCNGC	2 cut(s)	39, 479
Bme1390I	CCNGG	4 cut(s)	86, 310, 583, 790
BmgBI	CACGTC	1 cut(s)	676
BmrFI	CCNGG	4 cut(s)	86, 310, 583, 790
BmsI	GCATC	3 cut(s)	696, 746, 886
BpiI	GAAGAC	1 cut(s)	815
BpmI	CTGGAG	2 cut(s)	84, 360
BpuMI	CCSGG	1 cut(s)	583
Bsa29I	ATCGAT	1 cut(s)	226
BsaI	GGTCTC	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 123
Bse1I	ACTGG	3 cut(s)	67, 343, 773
BseBI	CCWGG	3 cut(s)	86, 310, 790
BseCI	ATCGAT	1 cut(s)	226
BseGI	GGATG	3 cut(s)	280, 318, 489
BseLI	CCNNNNNNNGG	2 cut(s)	62, 123
BseNI	ACTGG	3 cut(s)	67, 343, 773
BseSI	GKGCMC	1 cut(s)	323
BsgI	GTGCAG	2 cut(s)	471, 722
Bsh1236I	CGCG	1 cut(s)	477
BshFI	GGCC	2 cut(s)	480, 793
BshVI	ATCGAT	1 cut(s)	226
BsiHKAI	GWGCWC	2 cut(s)	323, 407
BsiSI	CCGG	2 cut(s)	284, 583
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	62, 123
BsmAI	GTCTC	2 cut(s)	237, 790
BsmFI	GGGAC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	2 cut(s)	480, 793
Bso31I	GGTCTC	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	323, 407
Bsp1407I	TGTACA	1 cut(s)	678
Bsp143I	GATC	4 cut(s)	223, 277, 517, 585
BspACI	CCGC	3 cut(s)	38, 477, 671
BspANI	GGCC	2 cut(s)	480, 793
BspDI	ATCGAT	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	477
BspMI	ACCTGC	1 cut(s)	922
BspPI	GGATC	1 cut(s)	593
BspTNI	GGTCTC	1 cut(s)	237
BsrGI	TGTACA	1 cut(s)	678
BsrI	ACTGG	3 cut(s)	67, 343, 773
BssMI	GATC	4 cut(s)	223, 277, 517, 585
Bst2UI	CCWGG	3 cut(s)	86, 310, 790
Bst4CI	ACNGT	3 cut(s)	497, 683, 745
BstAUI	TGTACA	1 cut(s)	678
BstC8I	GCNNGC	3 cut(s)	130, 475, 803
BstF5I	GGATG	3 cut(s)	280, 318, 489
BstFNI	CGCG	1 cut(s)	477
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	4 cut(s)	226, 280, 520, 588
BstMAI	GTCTC	2 cut(s)	237, 790
BstMBI	GATC	4 cut(s)	223, 277, 517, 585
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	3 cut(s)	86, 310, 790
BstNSI	RCATGY	2 cut(s)	54, 829
BstSCI	CCNGG	4 cut(s)	84, 308, 581, 788
BstSFI	CTRYAG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	323
BstUI	CGCG	1 cut(s)	477
BstV2I	GAAGAC	1 cut(s)	815
Bsu15I	ATCGAT	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	480, 793
BsuTUI	ATCGAT	1 cut(s)	226
BtrI	CACGTC	1 cut(s)	676
BtsCI	GGATG	3 cut(s)	280, 318, 489
BtsIMutI	CAGTG	2 cut(s)	60, 780
BveI	ACCTGC	1 cut(s)	922
Cac8I	GCNNGC	3 cut(s)	130, 475, 803
CfoI	GCGC	1 cut(s)	134
ClaI	ATCGAT	1 cut(s)	226
CsiI	ACCWGGT	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	426, 679
CviAII	CATG	4 cut(s)	51, 372, 512, 826
CviJI	RGCY	5 cut(s)	128, 269, 287, 480, 793
CviKI_1	RGCY	5 cut(s)	128, 269, 287, 480, 793
CviQI	GTAC	2 cut(s)	426, 679
DpnI	GATC	4 cut(s)	225, 279, 519, 587
DpnII	GATC	4 cut(s)	223, 277, 517, 585
DraI	TTTAAA	1 cut(s)	921
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	868
Eco57I	CTGAAG	1 cut(s)	827
EcoRII	CCWGG	3 cut(s)	84, 308, 788
EcoRV	GATATC	1 cut(s)	868
EcoT22I	ATGCAT	1 cut(s)	513
FaeI	CATG	4 cut(s)	54, 375, 515, 829
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	4 cut(s)	50, 371, 511, 825
FauNDI	CATATG	1 cut(s)	31
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	2 cut(s)	38, 478
FokI	GGATG	3 cut(s)	267, 325, 476
Fsp4HI	GCNGC	2 cut(s)	38, 478
FspBI	CTAG	2 cut(s)	482, 881
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	2 cut(s)	38, 478
GsuI	CTGGAG	2 cut(s)	84, 360
HaeIII	GGCC	2 cut(s)	480, 793
HapII	CCGG	2 cut(s)	284, 583
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	4 cut(s)	54, 375, 515, 829
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HinfI	GANTC	5 cut(s)	13, 66, 691, 728, 877
HpaII	CCGG	2 cut(s)	284, 583
HphI	GGTGA	6 cut(s)	356, 527, 605, 611, 829, 905
Hpy166II	GTNNAC	3 cut(s)	321, 347, 679
Hpy188I	TCNGA	4 cut(s)	722, 733, 847, 947
Hpy188III	TCNNGA	6 cut(s)	10, 56, 76, 752, 881, 905
Hpy8I	GTNNAC	3 cut(s)	321, 347, 679
HpyAV	CCTTC	2 cut(s)	590, 864
HpyCH4III	ACNGT	3 cut(s)	497, 683, 745
HpyCH4IV	ACGT	4 cut(s)	407, 448, 504, 675
HpyCH4V	TGCA	8 cut(s)	50, 156, 321, 452, 511, 546, 665, 703
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpySE526I	ACGT	4 cut(s)	407, 448, 504, 675
Hsp92II	CATG	4 cut(s)	54, 375, 515, 829
HspAI	GCGC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	223, 277, 517, 585
LmnI	GCTCC	1 cut(s)	412
LweI	GCATC	3 cut(s)	696, 746, 886
MabI	ACCWGGT	1 cut(s)	84
MaeI	CTAG	2 cut(s)	482, 881
MaeII	ACGT	4 cut(s)	407, 448, 504, 675
MaeIII	GTNAC	5 cut(s)	7, 67, 497, 752, 817
MalI	GATC	4 cut(s)	225, 279, 519, 587
MboI	GATC	4 cut(s)	223, 277, 517, 585
MboII	GAAGA	3 cut(s)	455, 779, 820
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	2 cut(s)	323, 407
MluCI	AATT	6 cut(s)	24, 45, 119, 178, 201, 609
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	4 cut(s)	204, 335, 521, 642
Mph1103I	ATGCAT	1 cut(s)	513
MroXI	GAANNNNTTC	1 cut(s)	727
MseI	TTAA	2 cut(s)	251, 920
MspI	CCGG	2 cut(s)	284, 583
MspR9I	CCNGG	4 cut(s)	86, 310, 583, 790
MunI	CAATTG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	134
MvaI	CCWGG	3 cut(s)	86, 310, 790
MvnI	CGCG	1 cut(s)	477
MwoI	GCNNNNNNNGC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	583
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	4 cut(s)	223, 277, 517, 585
NlaIII	CATG	4 cut(s)	54, 375, 515, 829
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	5 cut(s)	7, 67, 497, 752, 817
NsiI	ATGCAT	1 cut(s)	513
NspI	RCATGY	2 cut(s)	54, 829
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	1 cut(s)	134
PdmI	GAANNNNTTC	1 cut(s)	727
PfeI	GAWTC	4 cut(s)	13, 691, 728, 877
PflMI	CCANNNNNTGG	1 cut(s)	123
PfoI	TCCNGGA	1 cut(s)	581
PkrI	GCNGC	2 cut(s)	39, 479
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
Psp6I	CCWGG	3 cut(s)	84, 308, 788
PspGI	CCWGG	3 cut(s)	84, 308, 788
RsaI	GTAC	2 cut(s)	427, 680
RsaNI	GTAC	2 cut(s)	426, 679
SaqAI	TTAA	2 cut(s)	251, 920
SatI	GCNGC	2 cut(s)	38, 478
Sau3AI	GATC	4 cut(s)	223, 277, 517, 585
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	4 cut(s)	86, 310, 583, 790
SduI	GDGCHC	2 cut(s)	323, 407
SexAI	ACCWGGT	1 cut(s)	84
SfaNI	GCATC	3 cut(s)	696, 746, 886
SfcI	CTRYAG	1 cut(s)	238
Sse9I	AATT	6 cut(s)	24, 45, 119, 178, 201, 609
SsiI	CCGC	3 cut(s)	38, 477, 671
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	2 cut(s)	482, 881
StyD4I	CCNGG	4 cut(s)	84, 308, 581, 788
TaaI	ACNGT	3 cut(s)	497, 683, 745
TaiI	ACGT	4 cut(s)	410, 451, 507, 678
TaqI	TCGA	2 cut(s)	226, 305
TasI	AATT	6 cut(s)	24, 45, 119, 178, 201, 609
TatI	WGTACW	1 cut(s)	678
TauI	GCSGC	2 cut(s)	40, 480
TfiI	GAWTC	4 cut(s)	13, 691, 728, 877
Tru1I	TTAA	2 cut(s)	251, 920
Tru9I	TTAA	2 cut(s)	251, 920
TscAI	CASTG	2 cut(s)	67, 780
TseFI	GTSAC	5 cut(s)	7, 67, 497, 752, 817
Tsp45I	GTSAC	5 cut(s)	7, 67, 497, 752, 817
TspDTI	ATGAA	2 cut(s)	602, 846
TspRI	CASTG	2 cut(s)	67, 780
Van91I	CCANNNNNTGG	1 cut(s)	123
VneI	GTGCAC	1 cut(s)	319
XbaI	TCTAGA	1 cut(s)	880
XceI	RCATGY	2 cut(s)	54, 829
XcmI	CCANNNNNNNNNTGG	1 cut(s)	560
XmnI	GAANNNNTTC	1 cut(s)	727
XspI	CTAG	2 cut(s)	482, 881
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.