RchiOBHm_Chr2g0102911

regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001461
Physical Location & Seq
Reverse (-)
14530226 .. 14531145
920 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47731

Sequence Viewer

Length: 645 bp
ATGAAGTGCTTTGATTTGTTTGATATTCTTTTTGGGCGTTTAATTAATACAAAGCGCTTATTTCTGTTTAGGGAGGCACGCATTTGGTCTCTGCTTGACCACCGCAATGTAGTCAAGTACCATGGGTGCTGGGTTGAGACGGCATTTTGGGGAGGACACGAAGGTGGTTTCATCGCTGAAGAGAAAAAGCCTTGTTTGTATCTGAAGCTGGAAGCCTGCGACAGTTCTTTAGCTGCCCAAACAATTAATGATTTGAAGAAGATCTGTGACATAGTACAAGCTGTATTGAAGGGACTTGTTTATCTTCATTCAAAGGGAATCGTCCATGGAGATATTAGAGCAGCAAACATTTTGATTAGTGATGGAAAAGCCAAAATATGTGATTTTGGACGAGCCAGTCATGGCACTGATCTCGATCAGAAACAGGACATTAAGAAGTTTGGGTTACTTATTGTTGAAATGCTCGATCCAAGTGCATTGCCAGATGCAAGATTACGAAGCAGGTTTCCTAAAGAGTTCAAGGCATTAGCTGAACAACTTGAAGAGATGACAGCCCCCAACCCGGAGACACGACCAACCTCTGCAGAACTTCTGCGGCATAAGAAGAAGTTAATCAAAGCTATAATGGGGATAGAGCTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 ko04140 ko04141 ko05160 ko05162 ko05164 ko05168 ko05169 map04138 map04140 map04141 map05160 map05162 map05164 map05168 map05169
Pfam Domains
Protein Families
Pkinase

Protein Analysis

214

Amino Acids

24.28

Weight (kDa)

8.98

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 21 - 141 3.8e-13 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 22 - 136 3.4e-18 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 396
Acc36I ACCTGC 1 cut(s) 492
AciI CCGC 2 cut(s) 103, 595
AclWI GGATC 1 cut(s) 461
AcuI CTGAAG 2 cut(s) 198, 224
AfaI GTAC 2 cut(s) 119, 276
AfeI AGCGCT 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 562
AgsI TTSAA 6 cut(s) 256, 289, 312, 458, 520, 542
AleI CACNNNNGTG 1 cut(s) 162
AluBI AGCT 6 cut(s) 208, 233, 281, 530, 620, 637
AluI AGCT 6 cut(s) 208, 233, 281, 530, 620, 637
Alw26I GTCTC 3 cut(s) 93, 131, 560
AlwI GGATC 1 cut(s) 461
Aor51HI AGCGCT 1 cut(s) 56
ApeKI GCWGC 2 cut(s) 233, 341
AseI ATTAAT 2 cut(s) 45, 246
AspLEI GCGC 1 cut(s) 57
AsuC2I CCSGG 1 cut(s) 563
BbvI GCAGC 2 cut(s) 220, 353
BccI CCATC 1 cut(s) 356
BceAI ACGGC 1 cut(s) 156
BcgI CGANNNNNNTGC 4 cut(s) 394, 428, 455, 489
BcnI CCSGG 1 cut(s) 563
BcoDI GTCTC 3 cut(s) 93, 131, 560
BfmI CTRYAG 1 cut(s) 582
BfoI RGCGCY 1 cut(s) 58
BfuAI ACCTGC 1 cut(s) 492
BglII AGATCT 1 cut(s) 261
BisI GCNGC 3 cut(s) 234, 342, 596
BlsI GCNGC 3 cut(s) 235, 343, 597
Bme1390I CCNGG 1 cut(s) 563
BmrFI CCNGG 1 cut(s) 563
BmsI GCATC 1 cut(s) 475
BpuMI CCSGG 1 cut(s) 563
BsaBI GATNNNNATC 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 121, 325
Bsc4I CCNNNNNNNGG 1 cut(s) 562
Bse1I ACTGG 1 cut(s) 396
Bse3DI GCAATG 2 cut(s) 112, 476
Bse8I GATNNNNATC 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 121, 325
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 1 cut(s) 562
BseMI GCAATG 2 cut(s) 112, 476
BseNI ACTGG 1 cut(s) 396
BseXI GCAGC 2 cut(s) 220, 353
BseYI CCCAGC 1 cut(s) 129
BsiSI CCGG 1 cut(s) 563
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 562
BsmAI GTCTC 3 cut(s) 93, 131, 560
BsmBI CGTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 306
Bso31I GGTCTC 1 cut(s) 93
Bsp143I GATC 4 cut(s) 261, 409, 415, 466
Bsp19I CCATGG 2 cut(s) 121, 325
BspACI CCGC 2 cut(s) 103, 595
BspMAI CTGCAG 1 cut(s) 586
BspMI ACCTGC 1 cut(s) 492
BspPI GGATC 1 cut(s) 461
BspTNI GGTCTC 1 cut(s) 93
BsrDI GCAATG 2 cut(s) 112, 476
BsrI ACTGG 1 cut(s) 396
BssECI CCNNGG 2 cut(s) 121, 325
BssMI GATC 4 cut(s) 261, 409, 415, 466
BssT1I CCWWGG 2 cut(s) 121, 325
Bst4CI ACNGT 1 cut(s) 224
Bst6I CTCTTC 2 cut(s) 174, 537
BstC8I GCNNGC 2 cut(s) 79, 217
BstDSI CCRYGG 2 cut(s) 121, 325
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 4 cut(s) 264, 412, 418, 469
BstMAI GTCTC 3 cut(s) 93, 131, 560
BstMBI GATC 4 cut(s) 261, 409, 415, 466
BstSCI CCNGG 1 cut(s) 561
BstSFI CTRYAG 1 cut(s) 582
BstV1I GCAGC 2 cut(s) 220, 353
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BtgI CCRYGG 2 cut(s) 121, 325
BtgZI GCGATG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 405
BveI ACCTGC 1 cut(s) 492
Cac8I GCNNGC 2 cut(s) 79, 217
CfoI GCGC 1 cut(s) 57
Csp6I GTAC 2 cut(s) 118, 275
CviAII CATG 3 cut(s) 122, 326, 401
CviQI GTAC 2 cut(s) 118, 275
DpnI GATC 4 cut(s) 263, 411, 417, 468
DpnII GATC 4 cut(s) 261, 409, 415, 466
DrdI GACNNNNNNGTC 1 cut(s) 396
DseDI GACNNNNNNGTC 1 cut(s) 396
Eam1104I CTCTTC 2 cut(s) 174, 537
EarI CTCTTC 2 cut(s) 174, 537
Eco130I CCWWGG 2 cut(s) 121, 325
Eco31I GGTCTC 1 cut(s) 93
Eco47III AGCGCT 1 cut(s) 56
Eco57I CTGAAG 2 cut(s) 198, 224
EcoT14I CCWWGG 2 cut(s) 121, 325
ErhI CCWWGG 2 cut(s) 121, 325
Esp3I CGTCTC 1 cut(s) 131
FaeI CATG 3 cut(s) 125, 329, 404
FaiI YATR 7 cut(s) 123, 272, 327, 379, 402, 600, 623
FaqI GGGAC 1 cut(s) 306
FatI CATG 3 cut(s) 121, 325, 400
Fnu4HI GCNGC 3 cut(s) 234, 342, 596
Fsp4HI GCNGC 3 cut(s) 234, 342, 596
GlaI GCGC 1 cut(s) 56
GluI GCNGC 3 cut(s) 234, 342, 596
GsaI CCCAGC 1 cut(s) 133
HaeII RGCGCY 1 cut(s) 58
HapII CCGG 1 cut(s) 563
HhaI GCGC 1 cut(s) 57
Hin1II CATG 3 cut(s) 125, 329, 404
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 1 cut(s) 318
HpaII CCGG 1 cut(s) 563
Hpy188I TCNGA 2 cut(s) 204, 420
Hpy188III TCNNGA 1 cut(s) 413
HpyAV CCTTC 2 cut(s) 155, 283
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4V TGCA 3 cut(s) 476, 488, 584
Hsp92II CATG 3 cut(s) 125, 329, 404
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 4 cut(s) 261, 409, 415, 466
LpnPI CCDG 8 cut(s) 115, 194, 229, 409, 410, 487, 495, 576
Lsp1109I GCAGC 2 cut(s) 220, 353
LweI GCATC 1 cut(s) 475
MaeIII GTNAC 2 cut(s) 266, 444
MalI GATC 4 cut(s) 263, 411, 417, 468
MboI GATC 4 cut(s) 261, 409, 415, 466
MboII GAAGA 6 cut(s) 191, 268, 271, 296, 554, 616
MflI RGATCY 1 cut(s) 261
MluCI AATT 2 cut(s) 42, 243
MnlI CCTC 3 cut(s) 67, 146, 589
MseI TTAA 5 cut(s) 41, 45, 246, 432, 611
MslI CAYNNNNRTG 2 cut(s) 105, 162
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 1 cut(s) 563
NciI CCSGG 1 cut(s) 563
NcoI CCATGG 2 cut(s) 121, 325
NdeII GATC 4 cut(s) 261, 409, 415, 466
NlaIII CATG 3 cut(s) 125, 329, 404
NmuCI GTSAC 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 162
PacI TTAATTAA 1 cut(s) 45
PfeI GAWTC 1 cut(s) 318
PkrI GCNGC 3 cut(s) 235, 343, 597
PshBI ATTAAT 2 cut(s) 45, 246
PspFI CCCAGC 1 cut(s) 129
PstI CTGCAG 1 cut(s) 586
PsuI RGATCY 1 cut(s) 261
RsaI GTAC 2 cut(s) 119, 276
RsaNI GTAC 2 cut(s) 118, 275
RseI CAYNNNNRTG 2 cut(s) 105, 162
SaqAI TTAA 5 cut(s) 41, 45, 246, 432, 611
SatI GCNGC 3 cut(s) 234, 342, 596
Sau3AI GATC 4 cut(s) 261, 409, 415, 466
ScrFI CCNGG 1 cut(s) 563
SetI ASST 9 cut(s) 166, 210, 235, 283, 506, 532, 581, 622, 639
SfaNI GCATC 1 cut(s) 475
SfcI CTRYAG 1 cut(s) 582
SmiMI CAYNNNNRTG 2 cut(s) 105, 162
Sse9I AATT 2 cut(s) 42, 243
SsiI CCGC 2 cut(s) 103, 595
StyD4I CCNGG 1 cut(s) 561
StyI CCWWGG 2 cut(s) 121, 325
TaaI ACNGT 1 cut(s) 224
TaqI TCGA 3 cut(s) 414, 465, 640
TasI AATT 2 cut(s) 42, 243
TatI WGTACW 1 cut(s) 274
TauI GCSGC 1 cut(s) 598
TfiI GAWTC 1 cut(s) 318
Tru1I TTAA 5 cut(s) 41, 45, 246, 432, 611
Tru9I TTAA 5 cut(s) 41, 45, 246, 432, 611
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 2 cut(s) 233, 341
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 3 cut(s) 17, 160, 296
TspRI CASTG 1 cut(s) 412
VspI ATTAAT 2 cut(s) 45, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.