Rroxscaffold_4G00310920

eukaryotic translation initiation factor 2alpha kinase activity

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
33088283 .. 33090203
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00310920.1

Sequence Viewer

Length: 702 bp
ATGGCGAGTAGCACGTTAGAGAAACTTCTCAAGGAGCGGACACTGTCAGAAAAAGAATGTTGGGACTTTTATGAGCAAATTTTGCTAGGGTTACAGCATATTCATAGCAACAATATCATGCATGGTGACATCTCCCCAAGTAACATGTTCCTGTTCGAAGGGAAAATAAAACTGGGTGATTTTGGGCATGCTCGCTTCATAGGAGAAGATGATGGGATTATAAAAAAAAATGAAGGAAATATGTTCTACAAGCCACCTGATAAAGAAGTGAGCTCCAAGGTTGATATCTACAGTAGTGGCCTGGTCTTCTTTGAAATGCTAAATGGCAATATGGACCCAAACAAGAAAATAACTTCTCTGTTCAGCGTCAGAACAGGCCAGTTTCCTCAATCTTGGACCAATGGTTTTGTCAAGTCTTTTCTAATGGCACTCTTGGACAAAAATCCATTGAATAGACCTTCGGCCGCTCAAGTCTTAGCTCATTTGCCACCCAACACTTCTTTAAGGGTCACACTCACAATTCTCCAGACTGCCGACTCTGCAGGACCTGTTCAGGTTATTGCTGGTACATCTCTGATTAAAAGAAAAAAAGATGTCAATAATGGTGTAAAAGTTGAGGCTTCTTCCCCCAGGATGCTGTCACCAGGTGATGAATGTAGGCTTTCAGTTGGTGGTGGACTCTTCTGGAAGAAATATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000186 GO:0001101 GO:0001817 GO:0001819 GO:0001932 GO:0001934 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004672 GO:0004674 GO:0004694 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006355 GO:0006417 GO:0006446 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008285 GO:0009267 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009755 GO:0009814 GO:0009817 GO:0009861 GO:0009866 GO:0009871 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010562 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010647 GO:0010921 GO:0010998 GO:0014070 GO:0016032 GO:0016298 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0017148 GO:0019048 GO:0019049 GO:0019208 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0020012 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0030682 GO:0030683 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0031399 GO:0031401 GO:0031667 GO:0031668 GO:0031669 GO:0032147 GO:0032268 GO:0032269 GO:0032270 GO:0032642 GO:0032722 GO:0032870 GO:0032872 GO:0032874 GO:0032991 GO:0033554 GO:0033674 GO:0033688 GO:0033689 GO:0034097 GO:0034198 GO:0034248 GO:0034249 GO:0035303 GO:0035304 GO:0035455 GO:0035556 GO:0035821 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0042594 GO:0042742 GO:0042802 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043555 GO:0043558 GO:0043666 GO:0043900 GO:0043901 GO:0043903 GO:0044003 GO:0044087 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044413 GO:0044415 GO:0044419 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045069 GO:0045071 GO:0045087 GO:0045088 GO:0045089 GO:0045182 GO:0045595 GO:0045859 GO:0045860 GO:0045937 GO:0046677 GO:0046777 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048525 GO:0048583 GO:0048584 GO:0050690 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050792 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051090 GO:0051091 GO:0051092 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051336 GO:0051338 GO:0051347 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051805 GO:0051807 GO:0051817 GO:0051832 GO:0051834 GO:0052173 GO:0052200 GO:0052564 GO:0052572 GO:0060255 GO:0065007 GO:0065009 GO:0070302 GO:0070304 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071704 GO:0071900 GO:0071902 GO:0072091 GO:0075136 GO:0080090 GO:0080134 GO:0080135 GO:0097159 GO:0098542 GO:0098772 GO:0140096 GO:1900225 GO:1901222 GO:1901224 GO:1901363 GO:1901532 GO:1901564 GO:1901700 GO:1902033 GO:1902036 GO:1902531 GO:1902533 GO:1903506 GO:1903706 GO:1903900 GO:1903901 GO:1990904 GO:1990928 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2001141
Pfam Domains
Protein Families

Protein Analysis

233

Amino Acids

25.85

Weight (kDa)

8.97

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 3 - 161 3.4e-12 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 4 - 161 1.3e-25 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
AccBSI CCGCTC 2 cut(s) 37, 467
AciI CCGC 2 cut(s) 37, 465
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 647
AfaI GTAC 1 cut(s) 568
AflIII ACRYGT 1 cut(s) 144
AgsI TTSAA 2 cut(s) 314, 451
AjnI CCWGG 3 cut(s) 300, 629, 643
AluBI AGCT 2 cut(s) 273, 479
AluI AGCT 2 cut(s) 273, 479
Alw21I GWGCWC 1 cut(s) 275
AlwNI CAGNNNCTG 1 cut(s) 548
AoxI GGCC 3 cut(s) 298, 376, 462
ApoI RAATTY 1 cut(s) 78
AspS9I GGNCC 3 cut(s) 334, 396, 545
AsuHPI GGTGA 4 cut(s) 137, 188, 633, 659
AsuII TTCGAA 1 cut(s) 156
AvaII GGWCC 3 cut(s) 334, 396, 545
BanII GRGCYC 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 275
BccI CCATC 1 cut(s) 206
BciT130I CCWGG 3 cut(s) 302, 631, 645
BfaI CTAG 1 cut(s) 86
BfmI CTRYAG 2 cut(s) 289, 540
BisI GCNGC 1 cut(s) 465
BlsI GCNGC 1 cut(s) 466
Bme1390I CCNGG 3 cut(s) 302, 631, 645
Bme18I GGWCC 3 cut(s) 334, 396, 545
BmgT120I GGNCC 3 cut(s) 334, 396, 545
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 3 cut(s) 302, 631, 645
BmrI ACTGGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 624
BmuI ACTGGG 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 298
BpmI CTGGAG 1 cut(s) 509
Bpu14I TTCGAA 1 cut(s) 156
BpuEI CTTGAG 2 cut(s) 14, 453
BsaJI CCNNGG 2 cut(s) 276, 629
Bse1I ACTGG 2 cut(s) 177, 379
BseBI CCWGG 3 cut(s) 302, 631, 645
BseDI CCNNGG 2 cut(s) 276, 629
BseGI GGATG 1 cut(s) 639
BseNI ACTGG 2 cut(s) 177, 379
BseX3I CGGCCG 1 cut(s) 462
Bsh1285I CGRYCG 1 cut(s) 465
BshFI GGCC 3 cut(s) 300, 378, 464
BsiEI CGRYCG 1 cut(s) 465
BsiHKAI GWGCWC 1 cut(s) 275
BslFI GGGAC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 3 cut(s) 300, 378, 464
Bsp119I TTCGAA 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 275
BspACI CCGC 2 cut(s) 37, 465
BspANI GGCC 3 cut(s) 300, 378, 464
BspLI GGNNCC 1 cut(s) 336
BspMAI CTGCAG 1 cut(s) 544
BspT104I TTCGAA 1 cut(s) 156
BsrBI CCGCTC 2 cut(s) 37, 467
BsrI ACTGG 2 cut(s) 177, 379
BssECI CCNNGG 2 cut(s) 276, 629
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 3 cut(s) 302, 631, 645
Bst4CI ACNGT 2 cut(s) 45, 293
Bst6I CTCTTC 1 cut(s) 686
BstAPI GCANNNNNTGC 1 cut(s) 82
BstBI TTCGAA 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 189, 193
BstDEI CTNAG 1 cut(s) 475
BstF5I GGATG 1 cut(s) 639
BstMCI CGRYCG 1 cut(s) 465
BstMWI GCNNNNNNNGC 2 cut(s) 82, 539
BstNI CCWGG 3 cut(s) 302, 631, 645
BstNSI RCATGY 2 cut(s) 148, 191
BstSCI CCNGG 3 cut(s) 300, 629, 643
BstSFI CTRYAG 2 cut(s) 289, 540
BstV2I GAAGAC 1 cut(s) 298
BstZI CGGCCG 1 cut(s) 462
BsuRI GGCC 3 cut(s) 300, 378, 464
BtsCI GGATG 1 cut(s) 639
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 2 cut(s) 189, 193
CaiI CAGNNNCTG 1 cut(s) 548
Cfr13I GGNCC 3 cut(s) 334, 396, 545
CseI GACGC 1 cut(s) 355
CsiI ACCWGGT 1 cut(s) 643
Csp6I GTAC 1 cut(s) 567
CviAII CATG 4 cut(s) 118, 122, 145, 188
CviJI RGCY 8 cut(s) 253, 273, 300, 378, 464, 479, 620, 661
CviKI_1 RGCY 8 cut(s) 253, 273, 300, 378, 464, 479, 620, 661
CviQI GTAC 1 cut(s) 567
DdeI CTNAG 1 cut(s) 475
DraIII CACNNNGTG 1 cut(s) 647
EaeI YGGCCR 1 cut(s) 462
EagI CGGCCG 1 cut(s) 462
Eam1104I CTCTTC 1 cut(s) 686
EarI CTCTTC 1 cut(s) 686
Ecl136II GAGCTC 1 cut(s) 273
EclXI CGGCCG 1 cut(s) 462
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 275
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 3 cut(s) 334, 396, 545
Eco52I CGGCCG 1 cut(s) 462
Eco53kI GAGCTC 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 545
EcoRII CCWGG 3 cut(s) 300, 629, 643
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 276
EcoT22I ATGCAT 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 4 cut(s) 121, 125, 148, 191
FaqI GGGAC 1 cut(s) 77
FatI CATG 4 cut(s) 117, 121, 144, 187
Fnu4HI GCNGC 1 cut(s) 465
FokI GGATG 1 cut(s) 646
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 465
FspBI CTAG 1 cut(s) 86
GluI GCNGC 1 cut(s) 465
GsuI CTGGAG 1 cut(s) 509
HaeIII GGCC 3 cut(s) 300, 378, 464
HgaI GACGC 1 cut(s) 355
Hin1II CATG 4 cut(s) 121, 125, 148, 191
HinfI GANTC 2 cut(s) 536, 678
HphI GGTGA 4 cut(s) 137, 188, 633, 659
Hpy166II GTNNAC 1 cut(s) 677
Hpy188I TCNGA 3 cut(s) 49, 371, 576
Hpy188III TCNNGA 2 cut(s) 526, 685
Hpy8I GTNNAC 1 cut(s) 677
HpyAV CCTTC 3 cut(s) 152, 227, 468
HpyCH4III ACNGT 2 cut(s) 45, 293
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 2 cut(s) 121, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 539
HpyF3I CTNAG 1 cut(s) 475
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 4 cut(s) 121, 125, 148, 191
LmnI GCTCC 2 cut(s) 34, 278
LweI GCATC 1 cut(s) 624
MabI ACCWGGT 1 cut(s) 643
MaeI CTAG 1 cut(s) 86
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 5 cut(s) 90, 125, 140, 508, 639
MbiI CCGCTC 2 cut(s) 37, 467
MboII GAAGA 5 cut(s) 218, 298, 615, 673, 700
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 2 cut(s) 78, 519
MlyI GAGTC 2 cut(s) 530, 672
MnlI CCTC 2 cut(s) 396, 610
Mph1103I ATGCAT 1 cut(s) 123
MseI TTAA 2 cut(s) 503, 579
MspR9I CCNGG 3 cut(s) 302, 631, 645
MvaI CCWGG 3 cut(s) 302, 631, 645
MwoI GCNNNNNNNGC 2 cut(s) 82, 539
NlaIII CATG 4 cut(s) 121, 125, 148, 191
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 3 cut(s) 125, 508, 639
NsiI ATGCAT 1 cut(s) 123
NspI RCATGY 2 cut(s) 148, 191
NspV TTCGAA 1 cut(s) 156
PaeI GCATGC 1 cut(s) 191
PciI ACATGT 1 cut(s) 144
PflFI GACNNNGTC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 466
PleI GAGTC 2 cut(s) 530, 672
PpsI GAGTC 2 cut(s) 530, 672
PpuMI RGGWCCY 1 cut(s) 545
PscI ACATGT 1 cut(s) 144
PsiI TTATAA 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 545
Psp6I CCWGG 3 cut(s) 300, 629, 643
PspGI CCWGG 3 cut(s) 300, 629, 643
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 3 cut(s) 334, 396, 545
PspPPI RGGWCCY 1 cut(s) 545
PstI CTGCAG 1 cut(s) 544
PstNI CAGNNNCTG 1 cut(s) 548
PsyI GACNNNGTC 1 cut(s) 43
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
SacI GAGCTC 1 cut(s) 275
SaqAI TTAA 2 cut(s) 503, 579
SatI GCNGC 1 cut(s) 465
Sau96I GGNCC 3 cut(s) 334, 396, 545
SchI GAGTC 2 cut(s) 530, 672
ScrFI CCNGG 3 cut(s) 302, 631, 645
SduI GDGCHC 1 cut(s) 275
SetI ASST 9 cut(s) 17, 259, 275, 282, 460, 481, 550, 558, 649
SexAI ACCWGGT 1 cut(s) 643
SfaNI GCATC 1 cut(s) 624
SfcI CTRYAG 2 cut(s) 289, 540
SfuI TTCGAA 1 cut(s) 156
SinI GGWCC 3 cut(s) 334, 396, 545
SmlI CTYRAG 2 cut(s) 29, 468
SmoI CTYRAG 2 cut(s) 29, 468
SphI GCATGC 1 cut(s) 191
Sse9I AATT 2 cut(s) 78, 519
SsiI CCGC 2 cut(s) 37, 465
SspMI CTAG 1 cut(s) 86
SstI GAGCTC 1 cut(s) 275
StyD4I CCNGG 3 cut(s) 300, 629, 643
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 2 cut(s) 45, 293
TaiI ACGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 156
TasI AATT 2 cut(s) 78, 519
TauI GCSGC 1 cut(s) 467
Tru1I TTAA 2 cut(s) 503, 579
Tru9I TTAA 2 cut(s) 503, 579
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 3 cut(s) 125, 508, 639
Tsp45I GTSAC 3 cut(s) 125, 508, 639
TspDTI ATGAA 4 cut(s) 92, 187, 246, 666
TspRI CASTG 1 cut(s) 48
Tth111I GACNNNGTC 1 cut(s) 43
VpaK11BI GGWCC 3 cut(s) 334, 396, 545
XapI RAATTY 1 cut(s) 78
XceI RCATGY 2 cut(s) 148, 191
XspI CTAG 1 cut(s) 86
Zsp2I ATGCAT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.