Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

13960393 .. 13962442

Gene Structure 2050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG161900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGCAGTGTGATGTGCCGCCGGGAATTATATGTCCTGACACTGGAGTCACTATCCAGACCTACCAGGTGTCTAATGTTGATGACAGAACCTACTCCAAGTTTAGCTCTGAGTATGATGTGGCAGCAGAAGAGTTTATTGGGGCTGGCGCATTCGGCGTTGTCGTTCGATGCAAGAACCTGATAGACAACCAAACTTATGCCATAAAGAAAATATCAATTGGTAACAGGGACAATACTGATGGATATGGCAACTATAGAGACCTATTAAGGGAGTCTATCATTTTAGCCACATTTGATGACCCTGCTGTTGTTCGGTATCACTCGACCTGGATGGAGTGCACTTTTGTTGGCACTACTGGAGGTGAACCTGATATTGTGGAAACCAATCCATGTCTTTACATACAACAGCAACTATGTGAGAGCACGTTGGAGCAAAAGATGAGGAGTACCGAACTTTCAAAGGAAGAATGTGCAGTCATTTTCTCACAGGTGGCACGCGGCCTAGCACACATCCACAGTCACAACATAATGCATGGTGATCTTGGCAGAGGAAATATATTCTTGAACAAGAACCAAGCAAAAATTGGAGACTTTGGACTTTCCCGGATCATAGGTGAAGGTGATGATGTAATTCATTTAGGAGATCCCCCACCTCTATACGCCGCAGCTGATAAATGTGTCCATGCAAATGCGGACGTGTTCAGTCTGGGGATTCTGCTGGTGCAGATGCTTCTCAACATCAGAACAGATTCAGAAGCACTGAAGGTGTTTCCTGACCTGAAAAAAGAAGAACCAGTGTTTCCTGCCTACTGGCCTAACGGTGTGCTGAAGACTTGGGTGACAAACATGCTGAAAAAAAATCCATCAGAAAGACCATCATCATCAGATATCGTGGAGAACCTACGCAAGATAGAGGATGCTATTCAGGAGTTTCATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

313

Amino Acids

34.82

Weight (kDa)

5.0

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	42 - 301	2.7e-20	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	43 - 299	6.6e-33	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AccII	CGCG	1 cut(s)	498
AciI	CCGC	4 cut(s)	17, 498, 663, 692
AclWI	GGATC	2 cut(s)	614, 638
AcuI	CTGAAG	2 cut(s)	782, 848
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	2 cut(s)	41, 268
AflIII	ACRYGT	1 cut(s)	696
AgsI	TTSAA	2 cut(s)	459, 565
AjiI	CACGTC	1 cut(s)	697
AjnI	CCWGG	2 cut(s)	63, 326
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	2 cut(s)	105, 668
AluI	AGCT	2 cut(s)	105, 668
Alw21I	GWGCWC	2 cut(s)	341, 425
Alw26I	GTCTC	2 cut(s)	252, 582
Alw44I	GTGCAC	1 cut(s)	337
AlwI	GGATC	2 cut(s)	614, 638
AoxI	GGCC	2 cut(s)	499, 812
ApaLI	GTGCAC	1 cut(s)	337
ApeKI	GCWGC	2 cut(s)	122, 665
Asp700I	GAANNNNTTC	1 cut(s)	748
AspLEI	GCGC	1 cut(s)	149
AsuC2I	CCSGG	2 cut(s)	21, 604
AsuHPI	GGTGA	5 cut(s)	374, 548, 626, 632, 850
BaeGI	GKGCMC	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	836
Bbv12I	GWGCWC	2 cut(s)	341, 425
BbvI	GCAGC	2 cut(s)	134, 677
BccI	CCATC	4 cut(s)	233, 325, 871, 883
BciT130I	CCWGG	2 cut(s)	65, 328
BcnI	CCSGG	2 cut(s)	21, 604
BcoDI	GTCTC	2 cut(s)	252, 582
BfaI	CTAG	1 cut(s)	503
BfmI	CTRYAG	1 cut(s)	253
BisI	GCNGC	5 cut(s)	17, 123, 499, 663, 666
BlsI	GCNGC	5 cut(s)	18, 124, 500, 664, 667
Bme1390I	CCNGG	4 cut(s)	21, 65, 328, 604
BmgBI	CACGTC	1 cut(s)	697
BmrFI	CCNGG	4 cut(s)	21, 65, 328, 604
BmsI	GCATC	3 cut(s)	158, 717, 907
BpiI	GAAGAC	1 cut(s)	836
BpmI	CTGGAG	2 cut(s)	63, 378
BpuMI	CCSGG	2 cut(s)	21, 604
BsaI	GGTCTC	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 268
Bse1I	ACTGG	4 cut(s)	46, 361, 794, 815
BseBI	CCWGG	2 cut(s)	65, 328
BseGI	GGATG	3 cut(s)	336, 510, 922
BseLI	CCNNNNNNNGG	2 cut(s)	41, 268
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	4 cut(s)	46, 361, 794, 815
BseRI	GAGGAG	1 cut(s)	457
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	134, 677
BsgI	GTGCAG	2 cut(s)	492, 743
Bsh1236I	CGCG	1 cut(s)	498
BshFI	GGCC	2 cut(s)	501, 814
BsiHKAI	GWGCWC	2 cut(s)	341, 425
BsiSI	CCGG	2 cut(s)	20, 604
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	41, 268
BsmAI	GTCTC	2 cut(s)	252, 582
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	501, 814
Bso31I	GGTCTC	1 cut(s)	252
Bsp1286I	GDGCHC	2 cut(s)	341, 425
Bsp143I	GATC	3 cut(s)	538, 606, 643
BspACI	CCGC	4 cut(s)	17, 498, 663, 692
BspANI	GGCC	2 cut(s)	501, 814
BspCNI	CTCAG	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	498
BspPI	GGATC	2 cut(s)	614, 638
BspTNI	GGTCTC	1 cut(s)	252
BsrI	ACTGG	4 cut(s)	46, 361, 794, 815
BssMI	GATC	3 cut(s)	538, 606, 643
Bst2UI	CCWGG	2 cut(s)	65, 328
Bst4CI	ACNGT	2 cut(s)	518, 821
Bst6I	CTCTTC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	145, 496
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	3 cut(s)	336, 510, 922
BstFNI	CGCG	1 cut(s)	498
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	3 cut(s)	541, 609, 646
BstMAI	GTCTC	2 cut(s)	252, 582
BstMBI	GATC	3 cut(s)	538, 606, 643
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstNI	CCWGG	2 cut(s)	65, 328
BstNSI	RCATGY	1 cut(s)	850
BstSCI	CCNGG	4 cut(s)	19, 63, 326, 602
BstSFI	CTRYAG	1 cut(s)	253
BstSLI	GKGCMC	1 cut(s)	341
BstUI	CGCG	1 cut(s)	498
BstV1I	GCAGC	2 cut(s)	134, 677
BstV2I	GAAGAC	1 cut(s)	836
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BsuRI	GGCC	2 cut(s)	501, 814
BtrI	CACGTC	1 cut(s)	697
BtsCI	GGATG	3 cut(s)	336, 510, 922
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	4 cut(s)	11, 39, 758, 801
Cac8I	GCNNGC	2 cut(s)	145, 496
CfoI	GCGC	1 cut(s)	149
CsiI	ACCWGGT	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	4 cut(s)	390, 533, 683, 847
CviJI	RGCY	6 cut(s)	105, 143, 287, 501, 668, 814
CviKI_1	RGCY	6 cut(s)	105, 143, 287, 501, 668, 814
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	3 cut(s)	540, 608, 645
DpnII	GATC	3 cut(s)	538, 606, 643
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	889
Eco57I	CTGAAG	2 cut(s)	782, 848
EcoRII	CCWGG	2 cut(s)	63, 326
EcoRV	GATATC	1 cut(s)	889
EcoT22I	ATGCAT	1 cut(s)	534
FaeI	CATG	4 cut(s)	393, 536, 686, 850
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	4 cut(s)	389, 532, 682, 846
Fnu4HI	GCNGC	5 cut(s)	17, 123, 499, 663, 666
FokI	GGATG	3 cut(s)	343, 497, 929
Fsp4HI	GCNGC	5 cut(s)	17, 123, 499, 663, 666
FspBI	CTAG	1 cut(s)	503
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	5 cut(s)	17, 123, 499, 663, 666
GsuI	CTGGAG	2 cut(s)	63, 378
HaeIII	GGCC	2 cut(s)	501, 814
HapII	CCGG	2 cut(s)	20, 604
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	4 cut(s)	393, 536, 686, 850
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	4 cut(s)	45, 272, 712, 749
HpaII	CCGG	2 cut(s)	20, 604
HphI	GGTGA	5 cut(s)	374, 548, 626, 632, 850
Hpy166II	GTNNAC	2 cut(s)	339, 365
Hpy188I	TCNGA	5 cut(s)	109, 743, 754, 868, 886
Hpy188III	TCNNGA	5 cut(s)	35, 55, 562, 773, 926
Hpy8I	GTNNAC	2 cut(s)	339, 365
HpyAV	CCTTC	2 cut(s)	611, 757
HpyCH4III	ACNGT	2 cut(s)	518, 821
HpyCH4IV	ACGT	2 cut(s)	425, 696
HpyCH4V	TGCA	7 cut(s)	4, 171, 339, 473, 532, 686, 724
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	2 cut(s)	425, 696
Hsp92II	CATG	4 cut(s)	393, 536, 686, 850
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	538, 606, 643
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	2 cut(s)	134, 677
LweI	GCATC	3 cut(s)	158, 717, 907
MabI	ACCWGGT	1 cut(s)	63
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	2 cut(s)	425, 696
MaeIII	GTNAC	4 cut(s)	46, 221, 518, 838
MalI	GATC	3 cut(s)	540, 608, 645
MboI	GATC	3 cut(s)	538, 606, 643
MboII	GAAGA	4 cut(s)	140, 476, 800, 841
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	2 cut(s)	341, 425
MluCI	AATT	4 cut(s)	24, 216, 582, 630
MlyI	GAGTC	2 cut(s)	54, 281
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	5 cut(s)	353, 435, 542, 663, 907
Mph1103I	ATGCAT	1 cut(s)	534
MroXI	GAANNNNTTC	1 cut(s)	748
MseI	TTAA	2 cut(s)	266, 940
MslI	CAYNNNNRTG	1 cut(s)	687
MspA1I	CMGCKG	1 cut(s)	668
MspI	CCGG	2 cut(s)	20, 604
MspR9I	CCNGG	4 cut(s)	21, 65, 328, 604
MunI	CAATTG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	2 cut(s)	65, 328
MvnI	CGCG	1 cut(s)	498
MwoI	GCNNNNNNNGC	1 cut(s)	153
NciI	CCSGG	2 cut(s)	21, 604
NdeII	GATC	3 cut(s)	538, 606, 643
NlaIII	CATG	4 cut(s)	393, 536, 686, 850
NmuCI	GTSAC	3 cut(s)	46, 518, 838
NsiI	ATGCAT	1 cut(s)	534
NspI	RCATGY	1 cut(s)	850
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	748
PfeI	GAWTC	2 cut(s)	712, 749
PfoI	TCCNGGA	1 cut(s)	602
PkrI	GCNGC	5 cut(s)	18, 124, 500, 664, 667
PleI	GAGTC	2 cut(s)	53, 280
PpsI	GAGTC	2 cut(s)	53, 280
Psp6I	CCWGG	2 cut(s)	63, 326
PspGI	CCWGG	2 cut(s)	63, 326
PsuI	RGATCY	1 cut(s)	643
PvuII	CAGCTG	1 cut(s)	668
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
RseI	CAYNNNNRTG	1 cut(s)	687
SaqAI	TTAA	2 cut(s)	266, 940
SatI	GCNGC	5 cut(s)	17, 123, 499, 663, 666
Sau3AI	GATC	3 cut(s)	538, 606, 643
SchI	GAGTC	2 cut(s)	54, 281
ScrFI	CCNGG	4 cut(s)	21, 65, 328, 604
SduI	GDGCHC	2 cut(s)	341, 425
SexAI	ACCWGGT	1 cut(s)	63
SfaNI	GCATC	3 cut(s)	158, 717, 907
SfcI	CTRYAG	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	687
Sse9I	AATT	4 cut(s)	24, 216, 582, 630
SsiI	CCGC	4 cut(s)	17, 498, 663, 692
SspMI	CTAG	1 cut(s)	503
StyD4I	CCNGG	4 cut(s)	19, 63, 326, 602
TaaI	ACNGT	2 cut(s)	518, 821
TaiI	ACGT	2 cut(s)	428, 699
TaqI	TCGA	2 cut(s)	166, 323
TasI	AATT	4 cut(s)	24, 216, 582, 630
TauI	GCSGC	3 cut(s)	19, 501, 665
TfiI	GAWTC	2 cut(s)	712, 749
Tru1I	TTAA	2 cut(s)	266, 940
Tru9I	TTAA	2 cut(s)	266, 940
TscAI	CASTG	3 cut(s)	46, 765, 801
TseFI	GTSAC	3 cut(s)	46, 518, 838
TseI	GCWGC	2 cut(s)	122, 665
Tsp45I	GTSAC	3 cut(s)	46, 518, 838
TspDTI	ATGAA	2 cut(s)	623, 923
TspRI	CASTG	3 cut(s)	46, 765, 801
VneI	GTGCAC	1 cut(s)	337
XceI	RCATGY	1 cut(s)	850
XcmI	CCANNNNNNNNNTGG	1 cut(s)	581
XmnI	GAANNNNTTC	1 cut(s)	748
XspI	CTAG	1 cut(s)	503
Zsp2I	ATGCAT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.