Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

14184210 .. 14190416

Gene Structure 6207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG162800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGCTACTCAACAGTACTGGAGGACATAAAGCATCTGAGGTAAATCGTATGCTGATAAGACGAGGAAAAGTGGAGCTTCCTGACAGCTGGCCTCATGGCTTACTAAAGACATGGGTGATGAGGATGCTAAAAAAGGAACCATCACAGAGACCTTCATCATCAAGGATAAGGAACAAATGTCCTGACACTGGAGTCACTATCCAGACCTACCAGGTGTCTAATGTTGATGAGAGAACCTACTCCAAGTTTTGCTCTGAGTATGATGTGGCAGCAGAAGAGTTTATTGTACATACTGAGTGCAGGGAGTCTATCATTTTAGCCACATTTGATCATCCTGCTGTTGTTCGGTATCACTCGACCTGGATGGAGTGCACTTTTGTTGGCACTACTGGAGGTGAACCTGATATTGTGGAAACCAATCCATGTCTTTACATACAACAGCAACTATGTGAGAGCACGTTGGAGCAAAAGATGAGGAGTACCGAACTTTCAAAGGAAGAATGTGCAGTCATTTTCTCACAGGTGGCACGCGGCCTAGCACACATCCACAGTCACAACATAATGCATGGTGATCTTGGCAGAGGAAATATATTCTTGAACAAGAACCAAGCAAAAATTGGAGACTTTGGACTTTCCCGGATCATAGGTGAAGGTGATGATGTAATTCATTTAGGAAACCCCCCACCTCTATACGCCGCACCTGATAAATGTGTCCATGCAAATGCGGACGTGTTCAGTCTGGGGATTCTGCTGGTGCAGATGCTTCTCAACATCAGAACAGATTCAGAAGCACTGAAGGTGTTTCCTGACCTGAAAAAAGAAGAACCAGTGTTTCCTGCCTACTGGCCTAACGGTGTGCTGAAGACTTGGGTGACAAACATGCTGAAAAAAAATCCATCAGAAAGACCATCATCATCAGATATCGTGGAGAACCTACGCAAGATAGAGGATGCTATTCAGGAGTTTCATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

324

Amino Acids

36.55

Weight (kDa)

6.19

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	98 - 310	3.3e-25	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	138 - 312	6.1e-17	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
AccII	CGCG	1 cut(s)	531
AciI	CCGC	3 cut(s)	531, 696, 725
AclWI	GGATC	1 cut(s)	647
AcuI	CTGAAG	2 cut(s)	815, 881
AfaI	GTAC	3 cut(s)	16, 288, 481
AfiI	CCNNNNNNNGG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	2 cut(s)	492, 598
AjiI	CACGTC	1 cut(s)	730
AjnI	CCWGG	2 cut(s)	210, 359
AluBI	AGCT	2 cut(s)	76, 87
AluI	AGCT	2 cut(s)	76, 87
Alw21I	GWGCWC	2 cut(s)	374, 458
Alw26I	GTCTC	2 cut(s)	142, 615
Alw44I	GTGCAC	1 cut(s)	370
AlwI	GGATC	1 cut(s)	647
AoxI	GGCC	3 cut(s)	89, 532, 845
ApaLI	GTGCAC	1 cut(s)	370
ApeKI	GCWGC	1 cut(s)	269
Asp700I	GAANNNNTTC	1 cut(s)	781
AsuC2I	CCSGG	1 cut(s)	637
AsuHPI	GGTGA	6 cut(s)	127, 407, 581, 659, 665, 883
BaeGI	GKGCMC	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	869
Bbv12I	GWGCWC	2 cut(s)	374, 458
BbvI	GCAGC	1 cut(s)	281
BccI	CCATC	4 cut(s)	148, 358, 904, 916
BciT130I	CCWGG	2 cut(s)	212, 361
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	637
BcoDI	GTCTC	2 cut(s)	142, 615
BfaI	CTAG	1 cut(s)	536
BisI	GCNGC	3 cut(s)	270, 532, 696
BlsI	GCNGC	3 cut(s)	271, 533, 697
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	3 cut(s)	212, 361, 637
BmgBI	CACGTC	1 cut(s)	730
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	3 cut(s)	212, 361, 637
BmsI	GCATC	4 cut(s)	41, 114, 750, 940
BpiI	GAAGAC	1 cut(s)	869
BpmI	CTGGAG	3 cut(s)	39, 210, 411
BpuMI	CCSGG	1 cut(s)	637
BsaI	GGTCTC	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	5 cut(s)	22, 193, 394, 827, 848
BseBI	CCWGG	2 cut(s)	212, 361
BseGI	GGATG	5 cut(s)	129, 331, 369, 543, 955
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	3 cut(s)	27, 246, 285
BseNI	ACTGG	5 cut(s)	22, 193, 394, 827, 848
BseRI	GAGGAG	1 cut(s)	490
BseSI	GKGCMC	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	281
BsgI	GTGCAG	3 cut(s)	319, 525, 776
Bsh1236I	CGCG	1 cut(s)	531
BshFI	GGCC	3 cut(s)	91, 534, 847
BsiHKAI	GWGCWC	2 cut(s)	374, 458
BsiSI	CCGG	1 cut(s)	637
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	2 cut(s)	142, 615
BsnI	GGCC	3 cut(s)	91, 534, 847
Bso31I	GGTCTC	1 cut(s)	142
Bsp1286I	GDGCHC	2 cut(s)	374, 458
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	3 cut(s)	328, 571, 639
BspACI	CCGC	3 cut(s)	531, 696, 725
BspANI	GGCC	3 cut(s)	91, 534, 847
BspCNI	CTCAG	3 cut(s)	28, 247, 286
BspFNI	CGCG	1 cut(s)	531
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	647
BspTNI	GGTCTC	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	286
BsrI	ACTGG	5 cut(s)	22, 193, 394, 827, 848
BssMI	GATC	3 cut(s)	328, 571, 639
Bst2UI	CCWGG	2 cut(s)	212, 361
Bst4CI	ACNGT	3 cut(s)	14, 551, 854
Bst6I	CTCTTC	1 cut(s)	270
BstAUI	TGTACA	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	89, 529
BstDEI	CTNAG	3 cut(s)	36, 255, 294
BstF5I	GGATG	5 cut(s)	129, 331, 369, 543, 955
BstFNI	CGCG	1 cut(s)	531
BstKTI	GATC	3 cut(s)	331, 574, 642
BstMAI	GTCTC	2 cut(s)	142, 615
BstMBI	GATC	3 cut(s)	328, 571, 639
BstNI	CCWGG	2 cut(s)	212, 361
BstNSI	RCATGY	1 cut(s)	883
BstSCI	CCNGG	3 cut(s)	210, 359, 635
BstSLI	GKGCMC	1 cut(s)	374
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	281
BstV2I	GAAGAC	1 cut(s)	869
BsuRI	GGCC	3 cut(s)	91, 534, 847
BtrI	CACGTC	1 cut(s)	730
BtsCI	GGATG	5 cut(s)	129, 331, 369, 543, 955
BtsIMutI	CAGTG	3 cut(s)	186, 791, 834
Cac8I	GCNNGC	2 cut(s)	89, 529
CsiI	ACCWGGT	1 cut(s)	210
Csp6I	GTAC	3 cut(s)	15, 287, 480
CviAII	CATG	6 cut(s)	95, 111, 423, 566, 716, 880
CviJI	RGCY	7 cut(s)	76, 87, 91, 99, 320, 534, 847
CviKI_1	RGCY	7 cut(s)	76, 87, 91, 99, 320, 534, 847
CviQI	GTAC	3 cut(s)	15, 287, 480
DdeI	CTNAG	3 cut(s)	36, 255, 294
DpnI	GATC	3 cut(s)	330, 573, 641
DpnII	GATC	3 cut(s)	328, 571, 639
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	142
Eco32I	GATATC	1 cut(s)	922
Eco57I	CTGAAG	2 cut(s)	815, 881
EcoRII	CCWGG	2 cut(s)	210, 359
EcoRV	GATATC	1 cut(s)	922
EcoT22I	ATGCAT	1 cut(s)	567
FaeI	CATG	6 cut(s)	98, 114, 426, 569, 719, 883
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	6 cut(s)	94, 110, 422, 565, 715, 879
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	270, 532, 696
FokI	GGATG	5 cut(s)	136, 318, 376, 530, 962
Fsp4HI	GCNGC	3 cut(s)	270, 532, 696
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	3 cut(s)	270, 532, 696
GsuI	CTGGAG	3 cut(s)	39, 210, 411
HaeIII	GGCC	3 cut(s)	91, 534, 847
HapII	CCGG	1 cut(s)	637
Hin1II	CATG	6 cut(s)	98, 114, 426, 569, 719, 883
HinfI	GANTC	4 cut(s)	192, 305, 745, 782
HpaII	CCGG	1 cut(s)	637
HphI	GGTGA	6 cut(s)	127, 407, 581, 659, 665, 883
Hpy166II	GTNNAC	2 cut(s)	372, 398
Hpy188I	TCNGA	6 cut(s)	37, 256, 776, 787, 901, 919
Hpy188III	TCNNGA	6 cut(s)	80, 182, 202, 595, 806, 959
Hpy8I	GTNNAC	2 cut(s)	372, 398
HpyAV	CCTTC	3 cut(s)	162, 644, 790
HpyCH4III	ACNGT	3 cut(s)	14, 551, 854
HpyCH4IV	ACGT	2 cut(s)	458, 729
HpyCH4V	TGCA	6 cut(s)	300, 372, 506, 565, 719, 757
HpyF3I	CTNAG	3 cut(s)	36, 255, 294
HpySE526I	ACGT	2 cut(s)	458, 729
Hsp92II	CATG	6 cut(s)	98, 114, 426, 569, 719, 883
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	328, 571, 639
LmnI	GCTCC	2 cut(s)	73, 463
Lsp1109I	GCAGC	1 cut(s)	281
LweI	GCATC	4 cut(s)	41, 114, 750, 940
MabI	ACCWGGT	1 cut(s)	210
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	2 cut(s)	458, 729
MaeIII	GTNAC	3 cut(s)	193, 551, 871
MalI	GATC	3 cut(s)	330, 573, 641
MboI	GATC	3 cut(s)	328, 571, 639
MboII	GAAGA	4 cut(s)	287, 509, 833, 874
MhlI	GDGCHC	2 cut(s)	374, 458
MluCI	AATT	2 cut(s)	615, 663
MlyI	GAGTC	2 cut(s)	201, 314
MmeI	TCCRAC	1 cut(s)	441
Mph1103I	ATGCAT	1 cut(s)	567
MroXI	GAANNNNTTC	1 cut(s)	781
MseI	TTAA	1 cut(s)	973
MslI	CAYNNNNRTG	1 cut(s)	720
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	1 cut(s)	637
MspR9I	CCNGG	3 cut(s)	212, 361, 637
MvaI	CCWGG	2 cut(s)	212, 361
MvnI	CGCG	1 cut(s)	531
NciI	CCSGG	1 cut(s)	637
NdeII	GATC	3 cut(s)	328, 571, 639
NlaIII	CATG	6 cut(s)	98, 114, 426, 569, 719, 883
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	3 cut(s)	193, 551, 871
NsiI	ATGCAT	1 cut(s)	567
NspI	RCATGY	1 cut(s)	883
PdmI	GAANNNNTTC	1 cut(s)	781
PfeI	GAWTC	2 cut(s)	745, 782
PfoI	TCCNGGA	1 cut(s)	635
PkrI	GCNGC	3 cut(s)	271, 533, 697
PleI	GAGTC	2 cut(s)	200, 313
PpsI	GAGTC	2 cut(s)	200, 313
Psp6I	CCWGG	2 cut(s)	210, 359
PspGI	CCWGG	2 cut(s)	210, 359
PspN4I	GGNNCC	1 cut(s)	138
PvuII	CAGCTG	1 cut(s)	87
RsaI	GTAC	3 cut(s)	16, 288, 481
RsaNI	GTAC	3 cut(s)	15, 287, 480
RseI	CAYNNNNRTG	1 cut(s)	720
SaqAI	TTAA	1 cut(s)	973
SatI	GCNGC	3 cut(s)	270, 532, 696
Sau3AI	GATC	3 cut(s)	328, 571, 639
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	2 cut(s)	201, 314
ScrFI	CCNGG	3 cut(s)	212, 361, 637
SduI	GDGCHC	2 cut(s)	374, 458
SexAI	ACCWGGT	1 cut(s)	210
SfaNI	GCATC	4 cut(s)	41, 114, 750, 940
SmiMI	CAYNNNNRTG	1 cut(s)	720
Sse9I	AATT	2 cut(s)	615, 663
SsiI	CCGC	3 cut(s)	531, 696, 725
SspMI	CTAG	1 cut(s)	536
StyD4I	CCNGG	3 cut(s)	210, 359, 635
TaaI	ACNGT	3 cut(s)	14, 551, 854
TaiI	ACGT	2 cut(s)	461, 732
TaqI	TCGA	1 cut(s)	356
TasI	AATT	2 cut(s)	615, 663
TatI	WGTACW	2 cut(s)	14, 286
TauI	GCSGC	2 cut(s)	534, 698
TfiI	GAWTC	2 cut(s)	745, 782
Tru1I	TTAA	1 cut(s)	973
Tru9I	TTAA	1 cut(s)	973
TscAI	CASTG	3 cut(s)	193, 798, 834
TseFI	GTSAC	3 cut(s)	193, 551, 871
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	3 cut(s)	193, 551, 871
TspDTI	ATGAA	3 cut(s)	144, 656, 956
TspRI	CASTG	3 cut(s)	193, 798, 834
VneI	GTGCAC	1 cut(s)	370
XceI	RCATGY	1 cut(s)	883
XcmI	CCANNNNNNNNNTGG	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	781
XspI	CTAG	1 cut(s)	536
ZrmI	AGTACT	1 cut(s)	16
Zsp2I	ATGCAT	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.