Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

14140051 .. 14142220

Gene Structure 2170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG162500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGAAGTCGAAAATTCACAGATTTTAAATCTCCCTGCTGAAATCAAATGTCTAGAGTCTGATGTAGTAATTCACAGCTACCAAATGTCTACAGTGGATGAGAATGTATACTCTAGGTTCAGTTCCGACTACGATTTGGACACCGAAGAATATCTTGGAAGTGGAGCAAATGGAGTTGTAGTTTGCTGCAAGAATCGGTTGGATGAAAAAACGTATGCTATAAAGAAAATCTCAGTATTCGTTGATGAGGATTTCCCATTTGATGAACTCATGAGGGAGGCTGTCATTTTATCCAAGTTCAATAACCCTGCAATTGTACGATACCATTCGGTATGGATTGAGCCTACTTTTGTTGGCATAACTGGAGATCCTCAAATACCAACGGAAGAGCATCCAGTTGAAACAGACCAACCATGCCTGTACATTCAGCAGGAGCTATGTGACTGCACGGTAGAGCAAAAGATGAAGGCTGGAGCACTTACGCCGGAAGAATGTGCACACATTTTCTTGGAAACCGCAAAAGGCCTGAAACACATTCATGGTCACAATATCATGCATGGAGACATTAAGAAGGCAAATATATTCTTCAGCAACGGCCTGCTGAAAATTGGAGATTTTGGCCTCGCCCAGGAAATAGGCGATGGTACAAATGAGATTAAAACCAGACCTCCATACTCAGCACCTGATGAACTGGTTAATGCAAAAGCTGATGTGTTTAGTTTGGGTATTCTGCTGGTTGAGATGCTACTTAACAGTACTGGAGGACATAAAGCATCTGAGGTAATTCGTATGCTGACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

267

Amino Acids

29.78

Weight (kDa)

4.79

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	47 - 252	4.7e-19	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	48 - 252	6e-37	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	89, 108
AciI	CCGC	1 cut(s)	516
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	571
AfaI	GTAC	4 cut(s)	318, 422, 646, 757
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgsI	TTSAA	2 cut(s)	301, 401
AjnI	CCWGG	1 cut(s)	627
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
AluBI	AGCT	3 cut(s)	78, 436, 707
AluI	AGCT	3 cut(s)	78, 436, 707
Alw21I	GWGCWC	2 cut(s)	478, 499
Alw26I	GTCTC	1 cut(s)	555
Alw44I	GTGCAC	1 cut(s)	495
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	3 cut(s)	523, 595, 619
ApaLI	GTGCAC	1 cut(s)	495
ApeKI	GCWGC	1 cut(s)	186
ApoI	RAATTY	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	499
Bbv12I	GWGCWC	2 cut(s)	478, 499
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	1 cut(s)	635
BceAI	ACGGC	1 cut(s)	610
BciT130I	CCWGG	1 cut(s)	629
BcoDI	GTCTC	1 cut(s)	555
BfaI	CTAG	2 cut(s)	53, 114
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
BmcAI	AGTACT	1 cut(s)	757
Bme1390I	CCNGG	1 cut(s)	629
BmrFI	CCNGG	1 cut(s)	629
BmsI	GCATC	3 cut(s)	400, 732, 782
BpmI	CTGGAG	3 cut(s)	384, 492, 780
BsaJI	CCNNGG	1 cut(s)	627
BsaXI	ACNNNNNCTCC	4 cut(s)	165, 195, 652, 682
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse1I	ACTGG	4 cut(s)	367, 395, 696, 763
BseBI	CCWGG	1 cut(s)	629
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	3 cut(s)	103, 208, 391
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMII	CTCAG	3 cut(s)	246, 690, 768
BseNI	ACTGG	4 cut(s)	367, 395, 696, 763
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	430
BshFI	GGCC	3 cut(s)	525, 597, 621
BsiHKAI	GWGCWC	2 cut(s)	478, 499
BsiSI	CCGG	1 cut(s)	485
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	1 cut(s)	555
BsnI	GGCC	3 cut(s)	525, 597, 621
Bsp1286I	GDGCHC	2 cut(s)	478, 499
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	1 cut(s)	516
BspANI	GGCC	3 cut(s)	525, 597, 621
BspCNI	CTCAG	3 cut(s)	245, 689, 769
BspHI	TCATGA	1 cut(s)	270
BspPI	GGATC	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	381
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	4 cut(s)	367, 395, 696, 763
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	1 cut(s)	367
BssNAI	GTATAC	1 cut(s)	109
Bst1107I	GTATAC	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	629
Bst4CI	ACNGT	3 cut(s)	94, 451, 755
Bst6I	CTCTTC	1 cut(s)	381
BstAUI	TGTACA	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	599
BstDEI	CTNAG	3 cut(s)	232, 676, 777
BstENI	CCTNNNNNAGG	1 cut(s)	626
BstF5I	GGATG	3 cut(s)	103, 208, 391
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	1 cut(s)	367
BstNI	CCWGG	1 cut(s)	629
BstSCI	CCNGG	1 cut(s)	627
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BstZ17I	GTATAC	1 cut(s)	109
BsuRI	GGCC	3 cut(s)	525, 597, 621
BtgZI	GCGATG	1 cut(s)	654
BtsCI	GGATG	3 cut(s)	103, 208, 391
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	599
CaiI	CAGNNNCTG	1 cut(s)	683
CciI	TCATGA	1 cut(s)	270
Csp6I	GTAC	4 cut(s)	317, 421, 645, 756
CviAII	CATG	5 cut(s)	271, 414, 539, 553, 557
CviJI	RGCY	9 cut(s)	78, 281, 343, 436, 470, 525, 597, 621, 707
CviKI_1	RGCY	9 cut(s)	78, 281, 343, 436, 470, 525, 597, 621, 707
CviQI	GTAC	4 cut(s)	317, 421, 645, 756
DdeI	CTNAG	3 cut(s)	232, 676, 777
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
DraI	TTTAAA	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco147I	AGGCCT	1 cut(s)	525
Eco57I	CTGAAG	1 cut(s)	571
EcoNI	CCTNNNNNAGG	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	627
EcoT22I	ATGCAT	1 cut(s)	558
FaeI	CATG	5 cut(s)	274, 417, 542, 556, 560
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FatI	CATG	5 cut(s)	270, 413, 538, 552, 556
FblI	GTMKAC	2 cut(s)	89, 108
Fnu4HI	GCNGC	1 cut(s)	187
FokI	GGATG	3 cut(s)	110, 215, 378
Fsp4HI	GCNGC	1 cut(s)	187
FspBI	CTAG	2 cut(s)	53, 114
GluI	GCNGC	1 cut(s)	187
GsuI	CTGGAG	3 cut(s)	384, 492, 780
HaeIII	GGCC	3 cut(s)	525, 597, 621
HapII	CCGG	1 cut(s)	485
Hin1II	CATG	5 cut(s)	274, 417, 542, 556, 560
HinfI	GANTC	2 cut(s)	56, 193
HpaII	CCGG	1 cut(s)	485
Hpy166II	GTNNAC	3 cut(s)	90, 109, 497
Hpy188I	TCNGA	3 cut(s)	61, 127, 778
Hpy188III	TCNNGA	2 cut(s)	53, 271
Hpy8I	GTNNAC	3 cut(s)	90, 109, 497
HpyAV	CCTTC	2 cut(s)	460, 565
HpyCH4III	ACNGT	3 cut(s)	94, 451, 755
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	6 cut(s)	189, 311, 447, 497, 556, 701
HpyF3I	CTNAG	3 cut(s)	232, 676, 777
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	5 cut(s)	274, 417, 542, 556, 560
Kzo9I	GATC	1 cut(s)	367
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	3 cut(s)	164, 433, 473
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	3 cut(s)	400, 732, 782
MaeI	CTAG	2 cut(s)	53, 114
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	2 cut(s)	440, 542
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	4 cut(s)	158, 398, 500, 577
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	2 cut(s)	478, 499
MluCI	AATT	5 cut(s)	13, 69, 312, 606, 783
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	2 cut(s)	150, 180
MnlI	CCTC	8 cut(s)	241, 267, 271, 381, 632, 678, 755, 772
Mph1103I	ATGCAT	1 cut(s)	558
MseI	TTAA	5 cut(s)	26, 567, 657, 696, 750
MslI	CAYNNNNRTG	1 cut(s)	537
MspI	CCGG	1 cut(s)	485
MspR9I	CCNGG	1 cut(s)	629
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	629
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	5 cut(s)	274, 417, 542, 556, 560
NmuCI	GTSAC	2 cut(s)	440, 542
NsiI	ATGCAT	1 cut(s)	558
PagI	TCATGA	1 cut(s)	270
PceI	AGGCCT	1 cut(s)	525
PciSI	GCTCTTC	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	188
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	627
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	4 cut(s)	318, 422, 646, 757
RsaNI	GTAC	4 cut(s)	317, 421, 645, 756
RseI	CAYNNNNRTG	1 cut(s)	537
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	5 cut(s)	26, 567, 657, 696, 750
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	1 cut(s)	367
ScaI	AGTACT	1 cut(s)	757
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	629
SduI	GDGCHC	2 cut(s)	478, 499
SetI	ASST	8 cut(s)	80, 119, 215, 438, 670, 685, 709, 783
SfaNI	GCATC	3 cut(s)	400, 732, 782
SfcI	CTRYAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	537
Sse9I	AATT	5 cut(s)	13, 69, 312, 606, 783
SseBI	AGGCCT	1 cut(s)	525
SsiI	CCGC	1 cut(s)	516
SspMI	CTAG	2 cut(s)	53, 114
StuI	AGGCCT	1 cut(s)	525
StyD4I	CCNGG	1 cut(s)	627
TaaI	ACNGT	3 cut(s)	94, 451, 755
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	9
TasI	AATT	5 cut(s)	13, 69, 312, 606, 783
TatI	WGTACW	2 cut(s)	420, 755
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	5 cut(s)	26, 567, 657, 696, 750
Tru9I	TTAA	5 cut(s)	26, 567, 657, 696, 750
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	2 cut(s)	440, 542
TseI	GCWGC	1 cut(s)	186
Tsp45I	GTSAC	2 cut(s)	440, 542
TspDTI	ATGAA	5 cut(s)	219, 279, 479, 527, 702
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	99
VneI	GTGCAC	1 cut(s)	495
XagI	CCTNNNNNAGG	1 cut(s)	626
XapI	RAATTY	1 cut(s)	13
XbaI	TCTAGA	1 cut(s)	52
XmiI	GTMKAC	2 cut(s)	89, 108
XspI	CTAG	2 cut(s)	53, 114
ZrmI	AGTACT	1 cut(s)	757
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.