Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

13410944 .. 13413166

Gene Structure 2223 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017151

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAAGTCGCGAATCCTATTCCAATTCCATATGTGCCGCCGAGAATTGCATGTCCCGACACTGGAGTCACTATCCAGACCTACCAGGTGTCTAATGTTGATATGAGAACCTACTCCAAATTTCGCTCTGAGTATGATGTGGCAGCAGAAGAGTGTATTGGTAATAAATTGAAATTAATTTTTTGTTTTCGGATTACCTCTTATTTATACTGTCATACATTTCAAGGGGCTGGCGCATTCGGCGTTGTCGTTCGATGCAAGAACCTGATAGACAGCCAAACTTATGCCATAAAGAAAATATCAATTGGTAAGAAGGACAATACTGATCGATATGGCAACTACAGAGACCTATTAAGGGAGTCTATCATTTTAGCCACATTTGATCATCCTGCTGTTGTTCGGTATCACTCGACCTGGATGGAGTGCACTTTTGTTGGCACTACTGGAGGTGAACCTGATATTGTGAAAACCAATCCATGTCTTTACATACAACAGCAACTATGTGAGAGCACGTTGGAGCAAAAGATGAGTACCGAACTTTCAAAGGAAGAATGTGCAGTCATTTTCTCACAGGTGGCACACGGCCTAGCACACATCCACAGTCACAACATAATGCATGGTGATCTTGGCAGAGGAAATATATTCTTGTGCAAGAACCAAGCAAAGATTGGAGATTTTGGACTTTCCCGGATCATAGGTGAAGGTGATGATGAAATTCATTTAGGAAATCCCCCACCTCAATACGCCCCACCTGATAAATGTGTCAATGCAAATGCGGATGTGTACAGTCTGGGGATTCTGCTGGTGCAGATGCTTCTCAACATCAGAACAGATTCAGAAGCATTGACGGTGTTTCGTGAACTGAAAAAAGAAGAACCAGTGTTTCCTGCCAACTGGCCTAACGGCGTGCTGAAGACTTGGGTGACAAACATGCTAAAAAGAAATCCATCAGACAGACCTTCATCAGCAGATATCGTGGAGAATATACGCGAGGTAGAGATTGCTATTCAGGGGTTTGTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

342

Amino Acids

38.2

Weight (kDa)

6.01

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	76 - 327	4.9e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	76 - 328	5.6e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AccII	CGCG	2 cut(s)	11, 990
AciI	CCGC	2 cut(s)	38, 776
AclWI	GGATC	1 cut(s)	698
AcsI	RAATTY	2 cut(s)	119, 714
AcuI	CTGAAG	1 cut(s)	932
AfaI	GTAC	2 cut(s)	532, 785
AfiI	CCNNNNNNNGG	2 cut(s)	62, 355
AgsI	TTSAA	3 cut(s)	172, 224, 543
AjnI	CCWGG	2 cut(s)	84, 413
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
Alw21I	GWGCWC	2 cut(s)	428, 512
Alw26I	GTCTC	1 cut(s)	339
Alw44I	GTGCAC	1 cut(s)	424
AlwI	GGATC	1 cut(s)	698
AoxI	GGCC	2 cut(s)	583, 896
ApaLI	GTGCAC	1 cut(s)	424
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	2 cut(s)	119, 714
AseI	ATTAAT	1 cut(s)	176
Asp700I	GAANNNNTTC	1 cut(s)	832
AspLEI	GCGC	1 cut(s)	236
AsuC2I	CCSGG	1 cut(s)	688
AsuHPI	GGTGA	5 cut(s)	461, 632, 710, 716, 934
BaeGI	GKGCMC	1 cut(s)	428
BbsI	GAAGAC	1 cut(s)	920
Bbv12I	GWGCWC	2 cut(s)	428, 512
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	2 cut(s)	412, 955
BceAI	ACGGC	2 cut(s)	598, 919
BciT130I	CCWGG	2 cut(s)	86, 415
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	688
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	1 cut(s)	587
BfmI	CTRYAG	1 cut(s)	340
BisI	GCNGC	2 cut(s)	38, 144
BlsI	GCNGC	2 cut(s)	39, 145
Bme1390I	CCNGG	3 cut(s)	86, 415, 688
BmrFI	CCNGG	3 cut(s)	86, 415, 688
BmsI	GCATC	2 cut(s)	245, 801
BpiI	GAAGAC	1 cut(s)	920
BpmI	CTGGAG	2 cut(s)	84, 465
BpuMI	CCSGG	1 cut(s)	688
Bsa29I	ATCGAT	1 cut(s)	328
BsaI	GGTCTC	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 355
Bse1I	ACTGG	4 cut(s)	67, 448, 878, 899
BseBI	CCWGG	2 cut(s)	86, 415
BseCI	ATCGAT	1 cut(s)	328
BseGI	GGATG	4 cut(s)	385, 423, 594, 784
BseLI	CCNNNNNNNGG	2 cut(s)	62, 355
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	4 cut(s)	67, 448, 878, 899
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	1 cut(s)	155
BsgI	GTGCAG	2 cut(s)	576, 827
Bsh1236I	CGCG	2 cut(s)	11, 990
BshFI	GGCC	2 cut(s)	585, 898
BshVI	ATCGAT	1 cut(s)	328
BsiHKAI	GWGCWC	2 cut(s)	428, 512
BsiSI	CCGG	1 cut(s)	688
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	62, 355
BsmAI	GTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	585, 898
Bso31I	GGTCTC	1 cut(s)	339
Bsp1286I	GDGCHC	2 cut(s)	428, 512
Bsp1407I	TGTACA	1 cut(s)	783
Bsp143I	GATC	4 cut(s)	325, 382, 622, 690
Bsp68I	TCGCGA	1 cut(s)	11
BspACI	CCGC	2 cut(s)	38, 776
BspANI	GGCC	2 cut(s)	585, 898
BspCNI	CTCAG	1 cut(s)	121
BspDI	ATCGAT	1 cut(s)	328
BspFNI	CGCG	2 cut(s)	11, 990
BspPI	GGATC	1 cut(s)	698
BspTNI	GGTCTC	1 cut(s)	339
BsrGI	TGTACA	1 cut(s)	783
BsrI	ACTGG	4 cut(s)	67, 448, 878, 899
BssMI	GATC	4 cut(s)	325, 382, 622, 690
Bst2UI	CCWGG	2 cut(s)	86, 415
Bst4CI	ACNGT	4 cut(s)	212, 602, 788, 850
Bst6I	CTCTTC	1 cut(s)	144
BstAUI	TGTACA	1 cut(s)	783
BstC8I	GCNNGC	2 cut(s)	232, 908
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	4 cut(s)	385, 423, 594, 784
BstFNI	CGCG	2 cut(s)	11, 990
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	4 cut(s)	328, 385, 625, 693
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	4 cut(s)	325, 382, 622, 690
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstNI	CCWGG	2 cut(s)	86, 415
BstNSI	RCATGY	2 cut(s)	54, 934
BstSCI	CCNGG	3 cut(s)	84, 413, 686
BstSFI	CTRYAG	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	428
BstUI	CGCG	2 cut(s)	11, 990
BstV1I	GCAGC	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	920
Bsu15I	ATCGAT	1 cut(s)	328
BsuRI	GGCC	2 cut(s)	585, 898
BsuTUI	ATCGAT	1 cut(s)	328
BtsCI	GGATG	4 cut(s)	385, 423, 594, 784
BtsIMutI	CAGTG	2 cut(s)	60, 885
BtuMI	TCGCGA	1 cut(s)	11
Cac8I	GCNNGC	2 cut(s)	232, 908
CfoI	GCGC	1 cut(s)	236
ClaI	ATCGAT	1 cut(s)	328
CsiI	ACCWGGT	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	531, 784
CviAII	CATG	4 cut(s)	51, 477, 617, 931
CviJI	RGCY	5 cut(s)	230, 276, 374, 585, 898
CviKI_1	RGCY	5 cut(s)	230, 276, 374, 585, 898
CviQI	GTAC	2 cut(s)	531, 784
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	4 cut(s)	327, 384, 624, 692
DpnII	GATC	4 cut(s)	325, 382, 622, 690
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	339
Eco32I	GATATC	1 cut(s)	973
Eco57I	CTGAAG	1 cut(s)	932
EcoRII	CCWGG	2 cut(s)	84, 413
EcoRV	GATATC	1 cut(s)	973
EcoT22I	ATGCAT	1 cut(s)	618
FaeI	CATG	4 cut(s)	54, 480, 620, 934
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	4 cut(s)	50, 476, 616, 930
FauNDI	CATATG	1 cut(s)	31
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	2 cut(s)	38, 144
FokI	GGATG	4 cut(s)	372, 430, 581, 791
Fsp4HI	GCNGC	2 cut(s)	38, 144
FspBI	CTAG	1 cut(s)	587
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	2 cut(s)	38, 144
GsuI	CTGGAG	2 cut(s)	84, 465
HaeIII	GGCC	2 cut(s)	585, 898
HapII	CCGG	1 cut(s)	688
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	4 cut(s)	54, 480, 620, 934
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HinfI	GANTC	5 cut(s)	13, 66, 359, 796, 833
HpaII	CCGG	1 cut(s)	688
HphI	GGTGA	5 cut(s)	461, 632, 710, 716, 934
Hpy166II	GTNNAC	4 cut(s)	426, 452, 784, 860
Hpy188I	TCNGA	5 cut(s)	130, 192, 827, 838, 952
Hpy188III	TCNNGA	4 cut(s)	10, 56, 76, 857
Hpy8I	GTNNAC	4 cut(s)	426, 452, 784, 860
HpyAV	CCTTC	3 cut(s)	307, 695, 969
HpyCH4III	ACNGT	4 cut(s)	212, 602, 788, 850
HpyCH4IV	ACGT	1 cut(s)	512
HpyCH4V	TGCA	8 cut(s)	50, 258, 426, 557, 616, 651, 770, 808
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	1 cut(s)	512
Hsp92II	CATG	4 cut(s)	54, 480, 620, 934
HspAI	GCGC	1 cut(s)	234
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	325, 382, 622, 690
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	2 cut(s)	245, 801
MabI	ACCWGGT	1 cut(s)	84
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	1 cut(s)	512
MaeIII	GTNAC	3 cut(s)	67, 602, 922
MalI	GATC	4 cut(s)	327, 384, 624, 692
MboI	GATC	4 cut(s)	325, 382, 622, 690
MboII	GAAGA	4 cut(s)	161, 560, 884, 925
MfeI	CAATTG	1 cut(s)	303
MhlI	GDGCHC	2 cut(s)	428, 512
MluCI	AATT	8 cut(s)	24, 45, 119, 167, 173, 177, 303, 714
MlyI	GAGTC	2 cut(s)	75, 368
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	5 cut(s)	208, 440, 626, 747, 985
Mph1103I	ATGCAT	1 cut(s)	618
MroXI	GAANNNNTTC	1 cut(s)	832
MseI	TTAA	3 cut(s)	176, 353, 1024
MspI	CCGG	1 cut(s)	688
MspR9I	CCNGG	3 cut(s)	86, 415, 688
MunI	CAATTG	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	236
MvaI	CCWGG	2 cut(s)	86, 415
MvnI	CGCG	2 cut(s)	11, 990
MwoI	GCNNNNNNNGC	1 cut(s)	240
NciI	CCSGG	1 cut(s)	688
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	4 cut(s)	325, 382, 622, 690
NlaIII	CATG	4 cut(s)	54, 480, 620, 934
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	3 cut(s)	67, 602, 922
NruI	TCGCGA	1 cut(s)	11
NsiI	ATGCAT	1 cut(s)	618
NspI	RCATGY	2 cut(s)	54, 934
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	832
PfeI	GAWTC	3 cut(s)	13, 796, 833
PfoI	TCCNGGA	1 cut(s)	686
PkrI	GCNGC	2 cut(s)	39, 145
PleI	GAGTC	2 cut(s)	74, 367
PpsI	GAGTC	2 cut(s)	74, 367
PshBI	ATTAAT	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	84, 413
PspGI	CCWGG	2 cut(s)	84, 413
RruI	TCGCGA	1 cut(s)	11
RsaI	GTAC	2 cut(s)	532, 785
RsaNI	GTAC	2 cut(s)	531, 784
SaqAI	TTAA	3 cut(s)	176, 353, 1024
SatI	GCNGC	2 cut(s)	38, 144
Sau3AI	GATC	4 cut(s)	325, 382, 622, 690
SchI	GAGTC	2 cut(s)	75, 368
ScrFI	CCNGG	3 cut(s)	86, 415, 688
SduI	GDGCHC	2 cut(s)	428, 512
SexAI	ACCWGGT	1 cut(s)	84
SfaNI	GCATC	2 cut(s)	245, 801
SfcI	CTRYAG	1 cut(s)	340
Sse9I	AATT	8 cut(s)	24, 45, 119, 167, 173, 177, 303, 714
SsiI	CCGC	2 cut(s)	38, 776
SspMI	CTAG	1 cut(s)	587
StyD4I	CCNGG	3 cut(s)	84, 413, 686
TaaI	ACNGT	4 cut(s)	212, 602, 788, 850
TaiI	ACGT	1 cut(s)	515
TaqI	TCGA	3 cut(s)	253, 328, 410
TasI	AATT	8 cut(s)	24, 45, 119, 167, 173, 177, 303, 714
TatI	WGTACW	1 cut(s)	783
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	3 cut(s)	13, 796, 833
Tru1I	TTAA	3 cut(s)	176, 353, 1024
Tru9I	TTAA	3 cut(s)	176, 353, 1024
TscAI	CASTG	2 cut(s)	67, 885
TseFI	GTSAC	3 cut(s)	67, 602, 922
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	3 cut(s)	67, 602, 922
TspDTI	ATGAA	3 cut(s)	707, 726, 951
TspRI	CASTG	2 cut(s)	67, 885
VneI	GTGCAC	1 cut(s)	424
VspI	ATTAAT	1 cut(s)	176
XapI	RAATTY	2 cut(s)	119, 714
XceI	RCATGY	2 cut(s)	54, 934
XcmI	CCANNNNNNNNNTGG	1 cut(s)	665
XmnI	GAANNNNTTC	1 cut(s)	832
XspI	CTAG	1 cut(s)	587
Zsp2I	ATGCAT	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.