Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

14243602 .. 14246750

Gene Structure 3149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG161500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAAGTCGAAAATTCACAGATTTTAAATCTCCCTGCTGAAATCAAATGTCTAGAGTCTGATGTAGTAATTCACAGCTACCAAATGTCTACAGTGGATGAGAATGTATACTCTAGGTTCAGTTCCGACTACGATTTGGACACCGAAGAATATCTTGGAAGTGGAGCAAATGGAGTTGTAGTTTGCTGCAAGAACCGGTTGGATGAAAAAACGTATGCTATAAAGAAAATCTCAGTATTCGTTGATGAGGATTTCCCATTTGATGAACTCATGAGGGAGGCTGTCATTTTATCCAAGTTCAATAACCCTGCAATTGTCCGATACCATTCGGTATGGATTGAACCTACTTTTGTTGGCATAACTGGAGATCCTCAAATACCAACGGAAGAGCATCCAGTTGAGACAGACCAACCATGCCTGTACATTCAGCAGGAGCTATGTGACTGCACGGTAGAGCAAAAGATGAAGGCTGGAGCACTTACGCTGGAAGATTGTGCACACATTTTCTTGGAAACCGCAAAAGGCCTGAAACACATTCATGGTCACAATATCATGCATGGAGACATTAAGAAGGCTAATATATTCTTCAGCAATGGCCTGCTGAAAATTGGAGATTTTGGCCTCGCCCAGGAAATAGGCGATGGTACAAATGAGATTAAAACCAGACCTCCATACTCAGCACCTGATGAACTGGTTAATGCAAAAGCTGATGTGTTTAGTTTGGGTATTCTGCTGGTTGAAATGCTACTCAACAGTACTGGAGGACATAAAGCATCTGAGGTCATTCGGCTGCTGACAAAACGAGGAAAAGCAGAGCTTCCTGACAGCTGGCCTGATGGCCTACTAAAGACATGGGTGATGAGGATGCTAAAAAAGGAACCATCACAGAGACCTTCATCATCAAGGATAAGGAAGAAGAAAGCAGAAATAGAGGGTGCTATTCTCAAGTTTCATCTGAAAAAGAAGCAGAAGGTGCATGATACTGCCGAAAAGCAGATTGAAGTCATTCTTCTTCAGCAAAAGCATACGGACAATGGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

347

Amino Acids

39.06

Weight (kDa)

5.78

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	48 - 305	5.1e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	48 - 305	6.6e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	89, 108
AciI	CCGC	1 cut(s)	516
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	13
AcuI	CTGAAG	2 cut(s)	571, 998
AfaI	GTAC	3 cut(s)	422, 646, 757
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgeI	ACCGGT	1 cut(s)	195
AgsI	TTSAA	4 cut(s)	301, 341, 740, 1001
AjnI	CCWGG	1 cut(s)	627
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
AluBI	AGCT	5 cut(s)	78, 436, 707, 817, 828
AluI	AGCT	5 cut(s)	78, 436, 707, 817, 828
Alw21I	GWGCWC	2 cut(s)	478, 499
Alw26I	GTCTC	3 cut(s)	395, 555, 883
Alw44I	GTGCAC	1 cut(s)	495
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	5 cut(s)	523, 595, 619, 830, 838
ApaLI	GTGCAC	1 cut(s)	495
ApeKI	GCWGC	2 cut(s)	186, 790
ApoI	RAATTY	1 cut(s)	13
AsiGI	ACCGGT	1 cut(s)	195
Asp700I	GAANNNNTTC	1 cut(s)	1005
AsuHPI	GGTGA	1 cut(s)	868
BaeGI	GKGCMC	1 cut(s)	499
Bbv12I	GWGCWC	2 cut(s)	478, 499
BbvI	GCAGC	2 cut(s)	173, 777
BccI	CCATC	3 cut(s)	635, 830, 889
BciT130I	CCWGG	1 cut(s)	629
BcoDI	GTCTC	3 cut(s)	395, 555, 883
BfaI	CTAG	2 cut(s)	53, 114
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	2 cut(s)	187, 791
BlsI	GCNGC	2 cut(s)	188, 792
BmcAI	AGTACT	1 cut(s)	757
Bme1390I	CCNGG	1 cut(s)	629
BmiI	GGNNCC	1 cut(s)	879
BmrFI	CCNGG	1 cut(s)	629
BmsI	GCATC	3 cut(s)	400, 782, 855
BpmI	CTGGAG	3 cut(s)	384, 492, 780
BpuEI	CTTGAG	1 cut(s)	929
BsaI	GGTCTC	1 cut(s)	883
BsaJI	CCNNGG	1 cut(s)	627
BsaWI	WCCGGW	1 cut(s)	195
BsaXI	ACNNNNNCTCC	4 cut(s)	165, 195, 652, 682
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	4 cut(s)	367, 395, 696, 763
Bse3DI	GCAATG	1 cut(s)	598
BseBI	CCWGG	1 cut(s)	629
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	4 cut(s)	103, 208, 391, 870
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMI	GCAATG	1 cut(s)	598
BseMII	CTCAG	3 cut(s)	246, 690, 768
BseNI	ACTGG	4 cut(s)	367, 395, 696, 763
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	2 cut(s)	173, 777
BsgI	GTGCAG	1 cut(s)	430
BshFI	GGCC	5 cut(s)	525, 597, 621, 832, 840
BshTI	ACCGGT	1 cut(s)	195
BsiHKAI	GWGCWC	2 cut(s)	478, 499
BsiSI	CCGG	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	3 cut(s)	395, 555, 883
BsnI	GGCC	5 cut(s)	525, 597, 621, 832, 840
Bso31I	GGTCTC	1 cut(s)	883
Bsp1286I	GDGCHC	2 cut(s)	478, 499
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	1 cut(s)	516
BspANI	GGCC	5 cut(s)	525, 597, 621, 832, 840
BspCNI	CTCAG	3 cut(s)	245, 689, 769
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	879
BspPI	GGATC	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	381
BspTNI	GGTCTC	1 cut(s)	883
BsrDI	GCAATG	1 cut(s)	598
BsrFI	RCCGGY	1 cut(s)	195
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	4 cut(s)	367, 395, 696, 763
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	1 cut(s)	367
BssNAI	GTATAC	1 cut(s)	109
Bst1107I	GTATAC	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	629
Bst4CI	ACNGT	3 cut(s)	94, 451, 755
Bst6I	CTCTTC	1 cut(s)	381
BstAPI	GCANNNNNTGC	1 cut(s)	973
BstAUI	TGTACA	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	599, 830
BstDEI	CTNAG	3 cut(s)	232, 676, 777
BstENI	CCTNNNNNAGG	1 cut(s)	626
BstF5I	GGATG	4 cut(s)	103, 208, 391, 870
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	3 cut(s)	395, 555, 883
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	1 cut(s)	973
BstNI	CCWGG	1 cut(s)	629
BstSCI	CCNGG	1 cut(s)	627
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	2 cut(s)	173, 777
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BstZ17I	GTATAC	1 cut(s)	109
BsuRI	GGCC	5 cut(s)	525, 597, 621, 832, 840
BtgZI	GCGATG	1 cut(s)	654
BtsCI	GGATG	4 cut(s)	103, 208, 391, 870
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	599, 830
CaiI	CAGNNNCTG	1 cut(s)	683
CciI	TCATGA	1 cut(s)	270
Cfr10I	RCCGGY	1 cut(s)	195
Csp6I	GTAC	3 cut(s)	421, 645, 756
CspAI	ACCGGT	1 cut(s)	195
CviAII	CATG	7 cut(s)	271, 414, 539, 553, 557, 852, 977
CviQI	GTAC	3 cut(s)	421, 645, 756
DdeI	CTNAG	3 cut(s)	232, 676, 777
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
DraI	TTTAAA	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco147I	AGGCCT	1 cut(s)	525
Eco31I	GGTCTC	1 cut(s)	883
Eco57I	CTGAAG	2 cut(s)	571, 998
EcoNI	CCTNNNNNAGG	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	627
EcoT22I	ATGCAT	1 cut(s)	558
FaeI	CATG	7 cut(s)	274, 417, 542, 556, 560, 855, 980
FalI	AAGNNNNNCTT	6 cut(s)	138, 170, 801, 833, 993, 1025
FatI	CATG	7 cut(s)	270, 413, 538, 552, 556, 851, 976
FblI	GTMKAC	2 cut(s)	89, 108
Fnu4HI	GCNGC	2 cut(s)	187, 791
FokI	GGATG	4 cut(s)	110, 215, 378, 877
Fsp4HI	GCNGC	2 cut(s)	187, 791
FspBI	CTAG	2 cut(s)	53, 114
GluI	GCNGC	2 cut(s)	187, 791
GsuI	CTGGAG	3 cut(s)	384, 492, 780
HaeIII	GGCC	5 cut(s)	525, 597, 621, 832, 840
HapII	CCGG	1 cut(s)	196
Hin1II	CATG	7 cut(s)	274, 417, 542, 556, 560, 855, 980
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	1 cut(s)	868
Hpy166II	GTNNAC	3 cut(s)	90, 109, 497
Hpy188I	TCNGA	5 cut(s)	61, 127, 320, 778, 957
Hpy188III	TCNNGA	3 cut(s)	53, 271, 821
Hpy8I	GTNNAC	3 cut(s)	90, 109, 497
HpyAV	CCTTC	4 cut(s)	460, 565, 903, 964
HpyCH4III	ACNGT	3 cut(s)	94, 451, 755
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	7 cut(s)	189, 311, 447, 497, 556, 701, 976
HpyF10VI	GCNNNNNNNGC	1 cut(s)	973
HpyF3I	CTNAG	3 cut(s)	232, 676, 777
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	7 cut(s)	274, 417, 542, 556, 560, 855, 980
Kzo9I	GATC	1 cut(s)	367
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	3 cut(s)	164, 433, 473
Lsp1109I	GCAGC	2 cut(s)	173, 777
LweI	GCATC	3 cut(s)	400, 782, 855
MaeI	CTAG	2 cut(s)	53, 114
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	2 cut(s)	440, 542
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	8 cut(s)	158, 398, 500, 577, 925, 928, 1001, 1004
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	2 cut(s)	478, 499
MluCI	AATT	4 cut(s)	13, 69, 312, 606
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	2 cut(s)	150, 180
Mph1103I	ATGCAT	1 cut(s)	558
MroXI	GAANNNNTTC	1 cut(s)	1005
MseI	TTAA	4 cut(s)	26, 567, 657, 696
MslI	CAYNNNNRTG	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	828
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	629
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	629
MwoI	GCNNNNNNNGC	1 cut(s)	973
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	7 cut(s)	274, 417, 542, 556, 560, 855, 980
NlaIV	GGNNCC	1 cut(s)	879
NmuCI	GTSAC	2 cut(s)	440, 542
NsiI	ATGCAT	1 cut(s)	558
PagI	TCATGA	1 cut(s)	270
PceI	AGGCCT	1 cut(s)	525
PciSI	GCTCTTC	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	1005
PinAI	ACCGGT	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	188, 792
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	627
PspN4I	GGNNCC	1 cut(s)	879
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	828
RsaI	GTAC	3 cut(s)	422, 646, 757
RsaNI	GTAC	3 cut(s)	421, 645, 756
RseI	CAYNNNNRTG	1 cut(s)	537
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	4 cut(s)	26, 567, 657, 696
SatI	GCNGC	2 cut(s)	187, 791
Sau3AI	GATC	1 cut(s)	367
ScaI	AGTACT	1 cut(s)	757
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	629
SduI	GDGCHC	2 cut(s)	478, 499
SfaNI	GCATC	3 cut(s)	400, 782, 855
SfcI	CTRYAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	537
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
Sse9I	AATT	4 cut(s)	13, 69, 312, 606
SseBI	AGGCCT	1 cut(s)	525
SsiI	CCGC	1 cut(s)	516
SspMI	CTAG	2 cut(s)	53, 114
StuI	AGGCCT	1 cut(s)	525
StyD4I	CCNGG	1 cut(s)	627
TaaI	ACNGT	3 cut(s)	94, 451, 755
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	9
TasI	AATT	4 cut(s)	13, 69, 312, 606
TatI	WGTACW	2 cut(s)	420, 755
Tru1I	TTAA	4 cut(s)	26, 567, 657, 696
Tru9I	TTAA	4 cut(s)	26, 567, 657, 696
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	2 cut(s)	440, 542
TseI	GCWGC	2 cut(s)	186, 790
Tsp45I	GTSAC	2 cut(s)	440, 542
TspDTI	ATGAA	7 cut(s)	219, 279, 479, 527, 702, 885, 941
TspGWI	ACGGA	2 cut(s)	398, 1043
TspRI	CASTG	1 cut(s)	99
VneI	GTGCAC	1 cut(s)	495
XagI	CCTNNNNNAGG	1 cut(s)	626
XapI	RAATTY	1 cut(s)	13
XbaI	TCTAGA	1 cut(s)	52
XmiI	GTMKAC	2 cut(s)	89, 108
XmnI	GAANNNNTTC	1 cut(s)	1005
XspI	CTAG	2 cut(s)	53, 114
ZrmI	AGTACT	1 cut(s)	757
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.