Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003735

Physical Location & Seq

Genomic Coordinates Forward (+)

8996415 .. 9001400

Gene Structure 4986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAAGCTATCAGAAAGCAAGCCTCCAGGCTCCGCGAACAGGTCGCTAGGCAACAACAGGCTGTCCTCAAGCAGTTTGGGGCGGGAGGATATGGAGGTTCAGATAATTTAGTTACTGATGAGGCAGAACTAGTTCAGCATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTTCGTGGTGTAGAGGGATATATTGTCACCGGATCCAAACAGGTTGAAATTGGAACAAAGTTGTCTGAAGATAGCAGGAAATATGGGGCAGAAAATACCTGTACTAGTGGTAGTACGTTATCAAGAGCTTCATTGAGCTATGGACGTGCTCGTGCTCAAATGGAGAAGGAGCGGGGGACTCTGTTGAAATCTCTTGGCACACAGGTGGCAGAGCCATTAAGAGCAATGGTAATGGGCGCTCCATTGGAAGATGCTCGGCATCTTGCTCAACGATACGACAGAATGCGACAAGAAGCTGAAGCTCAGGCTATTGAAGTTTCCAGACGCCAAGCAAAAGTGAGGGAAACACCGGGCAATTCTGAGAATGTTATGAAACTAGAAGCATCAGAAGCAAAGTTGCAAGATCTGAAGGCAAATATGGGAATATTAGGGAAGGAAGCAGCTGCAGCAATGGCAGCAGTTGAGGCTCAACAACAGAGATTGACTCTCCAAAGACTCATTGCCATGGTCGAGGCTGAGCGTACTTATCATCAGAGGATCCTTCAGATACTAGATCAACTTGAAGGAGAGATGGTATCAGAACGACAACGTATTGAAGCGCCTCCTAGCCCCACTGTTGACAACAGCATGCCTCCACCCCCACCTTATGAGGAAGTAAATGGTATATATGCATCTGAATCACATAATGGAATGTCAGACAGCATGAGTTACTTCTTGGGCGAGGCTATGTTTACATATCAAGCTGTTTCTGATGTGGAGCTTAGTTTGTCAATTGGTGACTACGTTGTTGTGCGAAAGGTAACCAACAATGGTTGGGCAGAAGGGGAATGCAAAGGCAAAGCAGGTTGGTTCCCATTTGGATATATTGAAAGACGGGAACGAGTTCTTGCAAGCAAGGTGGCTGAAGTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0072583 GO:0097708 GO:0098657 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

BAR SH3_9

Protein Analysis

372

Amino Acids

41.24

Weight (kDa)

6.59

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_9	PF14604	309 - 357	1e-09	Variant SH3 domain
SH3_1	PF00018	309 - 352	1.8e-08	SH3 domain
SH3_2	PF07653	309 - 357	8e-08	Variant SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39020
fragaria_vesca	FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_3g27182
malus_domestica	MD05G1056500.v1.1 MD10G1064500.v1.1
prunus_persica	Prupe.8G086700_v2.0.a1 Prupe.8G086700_v2.0.a1
pyrus_communis	pycom05g04810 pycom10g05040
rosa_chinensis	RchiOBHm_Chr2g0102681 RchiOBHm_Chr6g0267341
rosa_laevigata	RLG00000014014
rosa_multiflora	Rmu_co8352115.1_g000001 Rmu_co8477675.1_g000001 Rmu_sc0000693.1_g000022 Rmu_sc0002077.1_g000001 Rmu_sc0002639.1_g000012 Rmu_sc0008034.1_g000007 Rmu_sc0028141.1_g000001 Rmu_sc0040922.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266630 Rroxscaffold_7G00200930
rosa_rugosa	Rorug02G0109200 Rorug06G0031400
rosa_samantha	Rh2CG163000 Rh6AG153300 Rh6BG153000 Rh6CG149200 Rh6DG137400
rosa_wichuraiana	Rw6G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1034
AccBSI	CCGCTC	1 cut(s)	373
AccII	CGCG	1 cut(s)	36
AciI	CCGC	3 cut(s)	34, 83, 373
AclWI	GGATC	4 cut(s)	228, 241, 733, 746
AcuI	CTGAAG	4 cut(s)	288, 519, 629, 728
AcvI	CACGTG	1 cut(s)	173
AcyI	GRCGYC	1 cut(s)	526
AfaI	GTAC	3 cut(s)	304, 316, 724
AfiI	CCNNNNNNNGG	1 cut(s)	40
AflIII	ACRYGT	1 cut(s)	170
AgsI	TTSAA	6 cut(s)	248, 388, 515, 764, 797, 1070
AhlI	ACTAGT	2 cut(s)	130, 305
AjiI	CACGTC	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	26
AleI	CACNNNNGTG	1 cut(s)	404
AluBI	AGCT	9 cut(s)	8, 157, 329, 339, 497, 503, 644, 944, 961
AluI	AGCT	9 cut(s)	8, 157, 329, 339, 497, 503, 644, 944, 961
Alw21I	GWGCWC	2 cut(s)	352, 358
AlwI	GGATC	4 cut(s)	228, 241, 733, 746
ApeKI	GCWGC	4 cut(s)	641, 644, 647, 656
Asp700I	GAANNNNTTC	2 cut(s)	132, 1083
AspLEI	GCGC	2 cut(s)	440, 802
AsuC2I	CCSGG	1 cut(s)	552
AsuHPI	GGTGA	2 cut(s)	220, 989
BamHI	GGATCC	2 cut(s)	233, 738
BauI	CACGAG	1 cut(s)	351
BbrPI	CACGTG	1 cut(s)	173
Bbv12I	GWGCWC	2 cut(s)	352, 358
BbvI	GCAGC	4 cut(s)	631, 653, 659, 668
BccI	CCATC	1 cut(s)	766
BciT130I	CCWGG	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	552
BcuI	ACTAGT	2 cut(s)	130, 305
BfaI	CTAG	6 cut(s)	48, 131, 306, 578, 752, 807
BfmI	CTRYAG	1 cut(s)	645
BfoI	RGCGCY	2 cut(s)	441, 803
BfuAI	ACCTGC	1 cut(s)	1034
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	4 cut(s)	642, 645, 648, 657
BlpI	GCTNAGC	1 cut(s)	717
BlsI	GCNGC	4 cut(s)	643, 646, 649, 658
Bme1390I	CCNGG	2 cut(s)	28, 552
BmgBI	CACGTC	1 cut(s)	347
BmiI	GGNNCC	4 cut(s)	32, 235, 740, 1052
BmrFI	CCNGG	2 cut(s)	28, 552
BmsI	GCATC	5 cut(s)	148, 442, 469, 593, 881
BplI	GAGNNNNNCTC	2 cut(s)	670, 702
BpmI	CTGGAG	1 cut(s)	10
Bpu10I	CCTNAGC	1 cut(s)	504
Bpu1102I	GCTNAGC	1 cut(s)	717
BpuEI	CTTGAG	2 cut(s)	53, 170
BpuMI	CCSGG	1 cut(s)	552
BsaAI	YACGTR	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	526
BsaJI	CCNNGG	1 cut(s)	705
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	759, 789
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse3DI	GCAATG	3 cut(s)	432, 657, 699
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	705
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	3 cut(s)	432, 657, 699
BseMII	CTCAG	3 cut(s)	518, 552, 708
BseXI	GCAGC	4 cut(s)	631, 653, 659, 668
Bsh1236I	CGCG	1 cut(s)	36
BsiHKAI	GWGCWC	2 cut(s)	352, 358
BsiSI	CCGG	2 cut(s)	231, 551
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	391
BsmI	GAATGC	2 cut(s)	489, 1034
Bsp1286I	GDGCHC	2 cut(s)	352, 358
Bsp143I	GATC	4 cut(s)	233, 604, 738, 754
Bsp1720I	GCTNAGC	1 cut(s)	717
Bsp19I	CCATGG	1 cut(s)	705
BspACI	CCGC	3 cut(s)	34, 83, 373
BspCNI	CTCAG	3 cut(s)	517, 553, 709
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	4 cut(s)	32, 235, 740, 1052
BspMAI	CTGCAG	1 cut(s)	649
BspMI	ACCTGC	1 cut(s)	1034
BspPI	GGATC	4 cut(s)	228, 241, 733, 746
BsrBI	CCGCTC	1 cut(s)	373
BsrDI	GCAATG	3 cut(s)	432, 657, 699
BssECI	CCNNGG	1 cut(s)	705
BssMI	GATC	4 cut(s)	233, 604, 738, 754
BssNI	GRCGYC	1 cut(s)	526
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	705
Bst2BI	CACGAG	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	817
BstACI	GRCGYC	1 cut(s)	526
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	3 cut(s)	21, 830, 1093
BstDEI	CTNAG	4 cut(s)	504, 561, 717, 962
BstDSI	CCRYGG	1 cut(s)	705
BstEII	GGTNACC	1 cut(s)	1000
BstFNI	CGCG	1 cut(s)	36
BstH2I	RGCGCY	2 cut(s)	441, 803
BstHHI	GCGC	2 cut(s)	440, 802
BstKTI	GATC	4 cut(s)	236, 607, 741, 757
BstMBI	GATC	4 cut(s)	233, 604, 738, 754
BstMWI	GCNNNNNNNGC	5 cut(s)	590, 647, 653, 656, 665
BstNI	CCWGG	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	832
BstPI	GGTNACC	1 cut(s)	1000
BstSCI	CCNGG	2 cut(s)	26, 550
BstSFI	CTRYAG	1 cut(s)	645
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	4 cut(s)	631, 653, 659, 668
BstX2I	RGATCY	3 cut(s)	233, 604, 738
BstYI	RGATCY	3 cut(s)	233, 604, 738
BtgI	CCRYGG	1 cut(s)	705
BtrI	CACGTC	1 cut(s)	347
BtsIMutI	CAGTG	1 cut(s)	813
BveI	ACCTGC	1 cut(s)	1034
Cac8I	GCNNGC	3 cut(s)	21, 830, 1093
CfoI	GCGC	2 cut(s)	440, 802
CseI	GACGC	1 cut(s)	534
Csp6I	GTAC	3 cut(s)	303, 315, 723
CspCI	CAANNNNNGTGG	2 cut(s)	1080, 1115
CviAII	CATG	3 cut(s)	706, 829, 904
CviQI	GTAC	3 cut(s)	303, 315, 723
DdeI	CTNAG	4 cut(s)	504, 561, 717, 962
DpnI	GATC	4 cut(s)	235, 606, 740, 756
DpnII	GATC	4 cut(s)	233, 604, 738, 754
Eco130I	CCWWGG	1 cut(s)	705
Eco57I	CTGAAG	4 cut(s)	288, 519, 629, 728
Eco72I	CACGTG	1 cut(s)	173
Eco91I	GGTNACC	1 cut(s)	1000
EcoO65I	GGTNACC	1 cut(s)	1000
EcoRII	CCWGG	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	705
EcoT22I	ATGCAT	1 cut(s)	874
ErhI	CCWWGG	1 cut(s)	705
FaeI	CATG	3 cut(s)	709, 832, 907
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	3 cut(s)	705, 828, 903
FauI	CCCGC	2 cut(s)	76, 366
Fnu4HI	GCNGC	4 cut(s)	642, 645, 648, 657
Fsp4HI	GCNGC	4 cut(s)	642, 645, 648, 657
FspBI	CTAG	6 cut(s)	48, 131, 306, 578, 752, 807
GlaI	GCGC	2 cut(s)	439, 801
GluI	GCNGC	4 cut(s)	642, 645, 648, 657
GsuI	CTGGAG	1 cut(s)	10
HaeII	RGCGCY	2 cut(s)	441, 803
HapII	CCGG	2 cut(s)	231, 551
HgaI	GACGC	1 cut(s)	534
HhaI	GCGC	2 cut(s)	440, 802
Hin1I	GRCGYC	1 cut(s)	526
Hin1II	CATG	3 cut(s)	709, 832, 907
Hin6I	GCGC	2 cut(s)	438, 800
HinP1I	GCGC	2 cut(s)	438, 800
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	4 cut(s)	379, 685, 696, 878
HpaII	CCGG	2 cut(s)	231, 551
HphI	GGTGA	2 cut(s)	220, 989
Hpy166II	GTNNAC	2 cut(s)	820, 933
Hpy188III	TCNNGA	2 cut(s)	324, 522
Hpy8I	GTNNAC	2 cut(s)	820, 933
HpyAV	CCTTC	6 cut(s)	361, 604, 628, 752, 758, 1016
HpyCH4III	ACNGT	1 cut(s)	817
HpyCH4IV	ACGT	5 cut(s)	172, 317, 346, 790, 984
HpyCH4V	TGCA	5 cut(s)	601, 647, 872, 1032, 1091
HpyF10VI	GCNNNNNNNGC	5 cut(s)	590, 647, 653, 656, 665
HpyF3I	CTNAG	4 cut(s)	504, 561, 717, 962
HpySE526I	ACGT	5 cut(s)	172, 317, 346, 790, 984
Hsp92I	GRCGYC	1 cut(s)	526
Hsp92II	CATG	3 cut(s)	709, 832, 907
HspAI	GCGC	2 cut(s)	438, 800
Kzo9I	GATC	4 cut(s)	233, 604, 738, 754
LmnI	GCTCC	4 cut(s)	36, 370, 445, 958
Lsp1109I	GCAGC	4 cut(s)	631, 653, 659, 668
LweI	GCATC	5 cut(s)	148, 442, 469, 593, 881
MaeI	CTAG	6 cut(s)	48, 131, 306, 578, 752, 807
MaeII	ACGT	5 cut(s)	172, 317, 346, 790, 984
MaeIII	GTNAC	5 cut(s)	112, 226, 908, 977, 1000
MalI	GATC	4 cut(s)	235, 606, 740, 756
MbiI	CCGCTC	1 cut(s)	373
MboI	GATC	4 cut(s)	233, 604, 738, 754
MboII	GAAGA	2 cut(s)	281, 461
MfeI	CAATTG	1 cut(s)	972
MflI	RGATCY	3 cut(s)	233, 604, 738
MhlI	GDGCHC	2 cut(s)	352, 358
MluCI	AATT	4 cut(s)	106, 249, 556, 972
MlyI	GAGTC	3 cut(s)	373, 679, 690
Mph1103I	ATGCAT	1 cut(s)	874
MroXI	GAANNNNTTC	2 cut(s)	132, 1083
MseI	TTAA	1 cut(s)	419
MslI	CAYNNNNRTG	2 cut(s)	404, 704
MspA1I	CMGCKG	1 cut(s)	644
MspI	CCGG	2 cut(s)	231, 551
MspR9I	CCNGG	2 cut(s)	28, 552
MunI	CAATTG	1 cut(s)	972
Mva1269I	GAATGC	2 cut(s)	489, 1034
MvaI	CCWGG	1 cut(s)	28
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	5 cut(s)	590, 647, 653, 656, 665
NciI	CCSGG	1 cut(s)	552
NcoI	CCATGG	1 cut(s)	705
NdeII	GATC	4 cut(s)	233, 604, 738, 754
NlaIII	CATG	3 cut(s)	709, 832, 907
NlaIV	GGNNCC	4 cut(s)	32, 235, 740, 1052
NmeAIII	GCCGAG	1 cut(s)	436
NmuCI	GTSAC	2 cut(s)	226, 977
NsiI	ATGCAT	1 cut(s)	874
NspI	RCATGY	1 cut(s)	832
OliI	CACNNNNGTG	1 cut(s)	404
PaeI	GCATGC	1 cut(s)	832
PctI	GAATGC	2 cut(s)	489, 1034
PdmI	GAANNNNTTC	2 cut(s)	132, 1083
PfeI	GAWTC	1 cut(s)	878
PkrI	GCNGC	4 cut(s)	643, 646, 649, 658
PleI	GAGTC	3 cut(s)	373, 679, 690
PmaCI	CACGTG	1 cut(s)	173
PmlI	CACGTG	1 cut(s)	173
PpsI	GAGTC	3 cut(s)	373, 679, 690
Ppu21I	YACGTR	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	26
PspCI	CACGTG	1 cut(s)	173
PspEI	GGTNACC	1 cut(s)	1000
PspGI	CCWGG	1 cut(s)	26
PspN4I	GGNNCC	4 cut(s)	32, 235, 740, 1052
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	3 cut(s)	233, 604, 738
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	3 cut(s)	304, 316, 724
RsaNI	GTAC	3 cut(s)	303, 315, 723
RseI	CAYNNNNRTG	2 cut(s)	404, 704
SaqAI	TTAA	1 cut(s)	419
SatI	GCNGC	4 cut(s)	642, 645, 648, 657
Sau3AI	GATC	4 cut(s)	233, 604, 738, 754
SchI	GAGTC	3 cut(s)	373, 679, 690
ScrFI	CCNGG	2 cut(s)	28, 552
SduI	GDGCHC	2 cut(s)	352, 358
SfaNI	GCATC	5 cut(s)	148, 442, 469, 593, 881
SfcI	CTRYAG	1 cut(s)	645
SmiMI	CAYNNNNRTG	2 cut(s)	404, 704
SmlI	CTYRAG	2 cut(s)	68, 149
SmoI	CTYRAG	2 cut(s)	68, 149
SpeI	ACTAGT	2 cut(s)	130, 305
SphI	GCATGC	1 cut(s)	832
Sse9I	AATT	4 cut(s)	106, 249, 556, 972
SsiI	CCGC	3 cut(s)	34, 83, 373
SspI	AATATT	1 cut(s)	627
SspMI	CTAG	6 cut(s)	48, 131, 306, 578, 752, 807
StyD4I	CCNGG	2 cut(s)	26, 550
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	1 cut(s)	817
TaiI	ACGT	5 cut(s)	175, 320, 349, 793, 987
TaqI	TCGA	1 cut(s)	711
TasI	AATT	4 cut(s)	106, 249, 556, 972
TatI	WGTACW	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	878
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TscAI	CASTG	1 cut(s)	820
TseFI	GTSAC	2 cut(s)	226, 977
TseI	GCWGC	4 cut(s)	641, 644, 647, 656
Tsp45I	GTSAC	2 cut(s)	226, 977
TspDTI	ATGAA	2 cut(s)	321, 587
TspRI	CASTG	1 cut(s)	820
XceI	RCATGY	1 cut(s)	832
XmnI	GAANNNNTTC	2 cut(s)	132, 1083
XspI	CTAG	6 cut(s)	48, 131, 306, 578, 752, 807
Zsp2I	ATGCAT	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.