Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028141.1

Orthogroup ID

OG0003735

Physical Location & Seq

Genomic Coordinates Forward (+)

444 .. 1870

Gene Structure 1427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028141.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atggaagcaatcagaaagcaagccaccaggcttcgcgaacaggtcgctcgccaacaacaggctgtcctcaagcagtttggagctggaggatatggaggttcagataatttagttactgatgaggcagaactagtgcagcatcagaaacttgagaagctttacatatcaacacgtgctggaaagcattatcaaagggatattgttcgtggtgtggagggatatattgtcactggatccaaacaggttgaaataggaacaaagttgtctgaagacagcaggaaatatggagctgaaaatacatgtactagtggtagtacgttatcaagagcttcattaagctatggacgtgctcgtgctcaaatggagaaggaacgagggaatctgttgaaagctcttggcacacaggtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0072583 GO:0097708 GO:0098657 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

BAR SH3_9

Protein Analysis

136

Amino Acids

15.01

Weight (kDa)

9.67

Isoelectric Point (pI)

20.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39020
fragaria_vesca	FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_3g27182
malus_domestica	MD05G1056500.v1.1 MD10G1064500.v1.1
prunus_persica	Prupe.8G086700_v2.0.a1 Prupe.8G086700_v2.0.a1
pyrus_communis	pycom05g04810 pycom10g05040
rosa_chinensis	RchiOBHm_Chr2g0102681 RchiOBHm_Chr6g0267341
rosa_laevigata	RLG00000014014
rosa_multiflora	Rmu_co8352115.1_g000001 Rmu_co8477675.1_g000001 Rmu_sc0000693.1_g000022 Rmu_sc0002077.1_g000001 Rmu_sc0002639.1_g000012 Rmu_sc0008034.1_g000007 Rmu_sc0028141.1_g000001 Rmu_sc0040922.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266630 Rroxscaffold_7G00200930
rosa_rugosa	Rorug02G0109200 Rorug06G0031400
rosa_samantha	Rh2CG163000 Rh6AG153300 Rh6BG153000 Rh6CG149200 Rh6DG137400
rosa_wichuraiana	Rw6G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	36
AclWI	GGATC	2 cut(s)	228, 241
AcuI	CTGAAG	1 cut(s)	288
AcvI	CACGTG	1 cut(s)	173
AfaI	GTAC	2 cut(s)	304, 316
AfiI	CCNNNNNNNGG	1 cut(s)	58
AflIII	ACRYGT	2 cut(s)	170, 299
AgsI	TTSAA	2 cut(s)	248, 388
AhlI	ACTAGT	2 cut(s)	130, 305
AjiI	CACGTC	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	26
AleI	CACNNNNGTG	1 cut(s)	404
AluBI	AGCT	6 cut(s)	83, 157, 290, 329, 339, 392
AluI	AGCT	6 cut(s)	83, 157, 290, 329, 339, 392
Alw21I	GWGCWC	2 cut(s)	352, 358
AlwI	GGATC	2 cut(s)	228, 241
ApeKI	GCWGC	1 cut(s)	136
BamHI	GGATCC	1 cut(s)	233
BauI	CACGAG	1 cut(s)	351
BbrPI	CACGTG	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	276
Bbv12I	GWGCWC	2 cut(s)	352, 358
BbvI	GCAGC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	28
BcuI	ACTAGT	2 cut(s)	130, 305
BfaI	CTAG	2 cut(s)	131, 306
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
Bme1390I	CCNGG	1 cut(s)	28
BmgBI	CACGTC	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	28
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	105
BpuEI	CTTGAG	2 cut(s)	53, 170
BsaAI	YACGTR	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	36
BsiHKAI	GWGCWC	2 cut(s)	352, 358
BslI	CCNNNNNNNGG	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	352, 358
Bsp143I	GATC	1 cut(s)	233
Bsp68I	TCGCGA	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	228, 241
BsrI	ACTGG	1 cut(s)	235
BssMI	GATC	1 cut(s)	233
BssSI	CACGAG	1 cut(s)	351
Bst2BI	CACGAG	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	21, 49
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	26
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
BtrI	CACGTC	1 cut(s)	347
BtsIMutI	CAGTG	1 cut(s)	228
BtuMI	TCGCGA	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	21, 49
Csp6I	GTAC	2 cut(s)	303, 315
CviAII	CATG	1 cut(s)	300
CviJI	RGCY	9 cut(s)	23, 31, 62, 83, 157, 290, 329, 339, 392
CviKI_1	RGCY	9 cut(s)	23, 31, 62, 83, 157, 290, 329, 339, 392
CviQI	GTAC	2 cut(s)	303, 315
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	288
Eco72I	CACGTG	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	26
FaeI	CATG	1 cut(s)	303
FaiI	YATR	6 cut(s)	93, 164, 222, 285, 301, 342
FatI	CATG	1 cut(s)	299
Fnu4HI	GCNGC	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	137
FspBI	CTAG	2 cut(s)	131, 306
GluI	GCNGC	1 cut(s)	137
GsuI	CTGGAG	1 cut(s)	105
Hin1II	CATG	1 cut(s)	303
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	1 cut(s)	379
Hpy188I	TCNGA	4 cut(s)	14, 103, 144, 268
Hpy188III	TCNNGA	2 cut(s)	35, 324
HpyAV	CCTTC	1 cut(s)	361
HpyCH4IV	ACGT	3 cut(s)	172, 317, 346
HpyCH4V	TGCA	1 cut(s)	136
HpySE526I	ACGT	3 cut(s)	172, 317, 346
Hsp92II	CATG	1 cut(s)	303
Kzo9I	GATC	1 cut(s)	233
LmnI	GCTCC	2 cut(s)	80, 287
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	2 cut(s)	131, 306
MaeII	ACGT	3 cut(s)	172, 317, 346
MaeIII	GTNAC	2 cut(s)	112, 226
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	1 cut(s)	281
MflI	RGATCY	1 cut(s)	233
MhlI	GDGCHC	2 cut(s)	352, 358
MluCI	AATT	1 cut(s)	106
MnlI	CCTC	6 cut(s)	77, 80, 89, 115, 208, 368
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	28
MvnI	CGCG	1 cut(s)	36
NdeII	GATC	1 cut(s)	233
NlaIII	CATG	1 cut(s)	303
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	226
NruI	TCGCGA	1 cut(s)	36
NspI	RCATGY	1 cut(s)	303
OliI	CACNNNNGTG	1 cut(s)	404
PciI	ACATGT	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	138
PmaCI	CACGTG	1 cut(s)	173
PmlI	CACGTG	1 cut(s)	173
Ppu21I	YACGTR	1 cut(s)	173
PscI	ACATGT	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	26
PspCI	CACGTG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	233
RruI	TCGCGA	1 cut(s)	36
RsaI	GTAC	2 cut(s)	304, 316
RsaNI	GTAC	2 cut(s)	303, 315
RseI	CAYNNNNRTG	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	2 cut(s)	352, 358
SfaNI	GCATC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	2 cut(s)	68, 149
SmoI	CTYRAG	2 cut(s)	68, 149
SpeI	ACTAGT	2 cut(s)	130, 305
Sse9I	AATT	1 cut(s)	106
SspMI	CTAG	2 cut(s)	131, 306
StyD4I	CCNGG	1 cut(s)	26
TaiI	ACGT	3 cut(s)	175, 320, 349
TasI	AATT	1 cut(s)	106
TatI	WGTACW	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	235
XceI	RCATGY	1 cut(s)	303
XspI	CTAG	2 cut(s)	131, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.