Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003735

Physical Location & Seq

Genomic Coordinates Reverse (-)

24659572 .. 24664676

Gene Structure 5105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG153000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAAGCAATCAGAAAACAAGCCACCAGGCTTCGCGAACAGGTCGCTCGCCAACAACAGGCTGTCCTCAAGCAGTTTGGAGCTGGAGGATATGGAGGTTCAGATAATTTAGTTACTGATGAGGCAGAACTAGTGCAGCATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTTCGTGGTGTGGAGGGATATATTGTCACTGGATCCAAACAGGTTGAAATAGGAACAAAGTTGTCTGAAGATAGCAGGAAATATGGAGCTGAAAATACATGTACTAGTGGTAGTACGTTATCAAGAGCTTCATTAAGCTATGGACGTGCTCGTGCTCAAATGGAGAAGGAACGAGGGAATCTGTTGAAAGCTCTTGGCACACAGGTGGCAGAGCCATTAAGAGCAATGGTAATGGGCGCTCCATTGGAAGATGCTCGGCATCTTGCTCAACGATATGACAGAATGCGACAAGAAGCTGAAGCTCAGGCTATTGAAGTTTCCAAACGCCAAGCAAAAGTGAGGGAAACACCAGGCAATTCAGATAATGTTATGAAACTAGAAGCAGCAGAAGCAAAGTTGCAAGATCTGAAGTCGAATATGGGTATATTAGGGAAGGAAGCAGCTGCAGCTATGGCAGCAGTCGAGGCTCAACAACAGAGATTGACTCTCCAGAGACTCATTGCCATGGTCGAGGCAGAGCGTACTTATCATCAGAGGGTCCTTCAGATACTTGATCAACTTGAAGGAGAGATGGTATCAGAACGACAACGTATTGAAGCGCCTCCTAGCCCCACTGTTGACAACAGCATGCCTCCACCTCCACCTTATGAGGAAGTTAATGGTATATATGCTTCTCAAACACATAATGGATTGTCAGACAGCATGGATTACTTCTTGGGGGAGGTTCGTAATCAAAGAAATTTCATATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0072583 GO:0097708 GO:0098657 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

BAR SH3_9

Protein Analysis

317

Amino Acids

35.3

Weight (kDa)

7.8

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39020
fragaria_vesca	FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_3g27182
malus_domestica	MD05G1056500.v1.1 MD10G1064500.v1.1
prunus_persica	Prupe.8G086700_v2.0.a1 Prupe.8G086700_v2.0.a1
pyrus_communis	pycom05g04810 pycom10g05040
rosa_chinensis	RchiOBHm_Chr2g0102681 RchiOBHm_Chr6g0267341
rosa_laevigata	RLG00000014014
rosa_multiflora	Rmu_co8352115.1_g000001 Rmu_co8477675.1_g000001 Rmu_sc0000693.1_g000022 Rmu_sc0002077.1_g000001 Rmu_sc0002639.1_g000012 Rmu_sc0008034.1_g000007 Rmu_sc0028141.1_g000001 Rmu_sc0040922.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266630 Rroxscaffold_7G00200930
rosa_rugosa	Rorug02G0109200 Rorug06G0031400
rosa_samantha	Rh2CG163000 Rh6AG153300 Rh6BG153000 Rh6CG149200 Rh6DG137400
rosa_wichuraiana	Rw6G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	952
AccII	CGCG	1 cut(s)	36
AclWI	GGATC	2 cut(s)	228, 241
AcsI	RAATTY	1 cut(s)	940
AcuI	CTGAAG	4 cut(s)	288, 519, 629, 728
AcvI	CACGTG	1 cut(s)	173
AfaI	GTAC	3 cut(s)	304, 316, 724
AfiI	CCNNNNNNNGG	1 cut(s)	58
AflIII	ACRYGT	2 cut(s)	170, 299
AgsI	TTSAA	5 cut(s)	248, 388, 515, 764, 797
AhlI	ACTAGT	2 cut(s)	130, 305
AjiI	CACGTC	1 cut(s)	347
AjnI	CCWGG	2 cut(s)	26, 550
AleI	CACNNNNGTG	1 cut(s)	404
Alw21I	GWGCWC	2 cut(s)	352, 358
Alw26I	GTCTC	1 cut(s)	688
AlwI	GGATC	2 cut(s)	228, 241
ApeKI	GCWGC	6 cut(s)	136, 584, 641, 644, 647, 656
ApoI	RAATTY	1 cut(s)	940
AspLEI	GCGC	2 cut(s)	440, 802
AspS9I	GGNCC	1 cut(s)	739
AvaII	GGWCC	1 cut(s)	739
BamHI	GGATCC	1 cut(s)	233
BarI	GAAGNNNNNNTAC	2 cut(s)	856, 888
BauI	CACGAG	1 cut(s)	351
BbrPI	CACGTG	1 cut(s)	173
Bbv12I	GWGCWC	2 cut(s)	352, 358
BbvI	GCAGC	6 cut(s)	148, 596, 631, 653, 659, 668
BccI	CCATC	1 cut(s)	766
BciT130I	CCWGG	2 cut(s)	28, 552
BclI	TGATCA	1 cut(s)	754
BcoDI	GTCTC	1 cut(s)	688
BcuI	ACTAGT	2 cut(s)	130, 305
BfaI	CTAG	4 cut(s)	131, 306, 578, 807
BfmI	CTRYAG	1 cut(s)	645
BfoI	RGCGCY	2 cut(s)	441, 803
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	6 cut(s)	137, 585, 642, 645, 648, 657
BlsI	GCNGC	6 cut(s)	138, 586, 643, 646, 649, 658
Bme1390I	CCNGG	2 cut(s)	28, 552
Bme18I	GGWCC	1 cut(s)	739
BmgBI	CACGTC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	739
BmiI	GGNNCC	2 cut(s)	235, 740
BmrFI	CCNGG	2 cut(s)	28, 552
BmsI	GCATC	3 cut(s)	148, 442, 469
BplI	GAGNNNNNCTC	2 cut(s)	670, 702
BpmI	CTGGAG	2 cut(s)	105, 674
Bpu10I	CCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	2 cut(s)	53, 170
BsaAI	YACGTR	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	705
BsaXI	ACNNNNNCTCC	2 cut(s)	759, 789
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	2 cut(s)	432, 699
BseBI	CCWGG	2 cut(s)	28, 552
BseDI	CCNNGG	1 cut(s)	705
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	2 cut(s)	432, 699
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	1 cut(s)	235
BseXI	GCAGC	6 cut(s)	148, 596, 631, 653, 659, 668
BsgI	GTGCAG	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	36
BsiHKAI	GWGCWC	2 cut(s)	352, 358
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	688
BsmI	GAATGC	1 cut(s)	489
Bsp1286I	GDGCHC	2 cut(s)	352, 358
Bsp143I	GATC	3 cut(s)	233, 604, 754
Bsp19I	CCATGG	1 cut(s)	705
Bsp68I	TCGCGA	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	235, 740
BspMAI	CTGCAG	1 cut(s)	649
BspPI	GGATC	2 cut(s)	228, 241
BsrDI	GCAATG	2 cut(s)	432, 699
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	705
BssMI	GATC	3 cut(s)	233, 604, 754
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	705
Bst2BI	CACGAG	1 cut(s)	351
Bst2UI	CCWGG	2 cut(s)	28, 552
Bst4CI	ACNGT	1 cut(s)	817
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	49, 830
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	1 cut(s)	705
BstFNI	CGCG	1 cut(s)	36
BstH2I	RGCGCY	2 cut(s)	441, 803
BstHHI	GCGC	2 cut(s)	440, 802
BstKTI	GATC	3 cut(s)	236, 607, 757
BstMAI	GTCTC	1 cut(s)	688
BstMBI	GATC	3 cut(s)	233, 604, 754
BstMWI	GCNNNNNNNGC	5 cut(s)	590, 647, 653, 656, 665
BstNI	CCWGG	2 cut(s)	28, 552
BstNSI	RCATGY	2 cut(s)	303, 832
BstSCI	CCNGG	2 cut(s)	26, 550
BstSFI	CTRYAG	1 cut(s)	645
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	6 cut(s)	148, 596, 631, 653, 659, 668
BstX2I	RGATCY	2 cut(s)	233, 604
BstYI	RGATCY	2 cut(s)	233, 604
BtgI	CCRYGG	1 cut(s)	705
BtrI	CACGTC	1 cut(s)	347
BtsIMutI	CAGTG	2 cut(s)	228, 813
BtuMI	TCGCGA	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	49, 830
CfoI	GCGC	2 cut(s)	440, 802
Cfr13I	GGNCC	1 cut(s)	739
Csp6I	GTAC	3 cut(s)	303, 315, 723
CviAII	CATG	4 cut(s)	300, 706, 829, 904
CviQI	GTAC	3 cut(s)	303, 315, 723
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	3 cut(s)	235, 606, 756
DpnII	GATC	3 cut(s)	233, 604, 754
Eco130I	CCWWGG	1 cut(s)	705
Eco47I	GGWCC	1 cut(s)	739
Eco57I	CTGAAG	4 cut(s)	288, 519, 629, 728
Eco72I	CACGTG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	739
EcoRII	CCWGG	2 cut(s)	26, 550
EcoT14I	CCWWGG	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	705
FaeI	CATG	4 cut(s)	303, 709, 832, 907
FatI	CATG	4 cut(s)	299, 705, 828, 903
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	6 cut(s)	137, 585, 642, 645, 648, 657
Fsp4HI	GCNGC	6 cut(s)	137, 585, 642, 645, 648, 657
FspBI	CTAG	4 cut(s)	131, 306, 578, 807
GlaI	GCGC	2 cut(s)	439, 801
GluI	GCNGC	6 cut(s)	137, 585, 642, 645, 648, 657
GsuI	CTGGAG	2 cut(s)	105, 674
HaeII	RGCGCY	2 cut(s)	441, 803
HhaI	GCGC	2 cut(s)	440, 802
Hin1II	CATG	4 cut(s)	303, 709, 832, 907
Hin6I	GCGC	2 cut(s)	438, 800
HinP1I	GCGC	2 cut(s)	438, 800
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	3 cut(s)	379, 685, 696
Hpy166II	GTNNAC	1 cut(s)	820
Hpy188III	TCNNGA	3 cut(s)	35, 324, 691
Hpy8I	GTNNAC	1 cut(s)	820
HpyAV	CCTTC	4 cut(s)	361, 628, 752, 758
HpyCH4III	ACNGT	1 cut(s)	817
HpyCH4IV	ACGT	4 cut(s)	172, 317, 346, 790
HpyCH4V	TGCA	3 cut(s)	136, 601, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	590, 647, 653, 656, 665
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	4 cut(s)	172, 317, 346, 790
Hsp92II	CATG	4 cut(s)	303, 709, 832, 907
HspAI	GCGC	2 cut(s)	438, 800
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	3 cut(s)	233, 604, 754
LmnI	GCTCC	3 cut(s)	80, 287, 445
Lsp1109I	GCAGC	6 cut(s)	148, 596, 631, 653, 659, 668
LweI	GCATC	3 cut(s)	148, 442, 469
MaeI	CTAG	4 cut(s)	131, 306, 578, 807
MaeII	ACGT	4 cut(s)	172, 317, 346, 790
MaeIII	GTNAC	2 cut(s)	112, 226
MalI	GATC	3 cut(s)	235, 606, 756
MboI	GATC	3 cut(s)	233, 604, 754
MboII	GAAGA	2 cut(s)	281, 461
MflI	RGATCY	2 cut(s)	233, 604
MhlI	GDGCHC	2 cut(s)	352, 358
MluCI	AATT	3 cut(s)	106, 556, 940
MlyI	GAGTC	2 cut(s)	679, 690
MseI	TTAA	3 cut(s)	335, 419, 858
MslI	CAYNNNNRTG	2 cut(s)	404, 704
MspA1I	CMGCKG	1 cut(s)	644
MspR9I	CCNGG	2 cut(s)	28, 552
Mva1269I	GAATGC	1 cut(s)	489
MvaI	CCWGG	2 cut(s)	28, 552
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	5 cut(s)	590, 647, 653, 656, 665
NcoI	CCATGG	1 cut(s)	705
NdeII	GATC	3 cut(s)	233, 604, 754
NlaIII	CATG	4 cut(s)	303, 709, 832, 907
NlaIV	GGNNCC	2 cut(s)	235, 740
NmeAIII	GCCGAG	1 cut(s)	436
NmuCI	GTSAC	1 cut(s)	226
NruI	TCGCGA	1 cut(s)	36
NspI	RCATGY	2 cut(s)	303, 832
OliI	CACNNNNGTG	1 cut(s)	404
PaeI	GCATGC	1 cut(s)	832
PciI	ACATGT	1 cut(s)	299
PctI	GAATGC	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	6 cut(s)	138, 586, 643, 646, 649, 658
PleI	GAGTC	2 cut(s)	679, 690
PmaCI	CACGTG	1 cut(s)	173
PmlI	CACGTG	1 cut(s)	173
PpsI	GAGTC	2 cut(s)	679, 690
Ppu21I	YACGTR	1 cut(s)	173
PpuMI	RGGWCCY	1 cut(s)	739
PscI	ACATGT	1 cut(s)	299
PsiI	TTATAA	1 cut(s)	952
Psp5II	RGGWCCY	1 cut(s)	739
Psp6I	CCWGG	2 cut(s)	26, 550
PspCI	CACGTG	1 cut(s)	173
PspGI	CCWGG	2 cut(s)	26, 550
PspN4I	GGNNCC	2 cut(s)	235, 740
PspPI	GGNCC	1 cut(s)	739
PspPPI	RGGWCCY	1 cut(s)	739
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	2 cut(s)	233, 604
PvuII	CAGCTG	1 cut(s)	644
RruI	TCGCGA	1 cut(s)	36
RsaI	GTAC	3 cut(s)	304, 316, 724
RsaNI	GTAC	3 cut(s)	303, 315, 723
RseI	CAYNNNNRTG	2 cut(s)	404, 704
SaqAI	TTAA	3 cut(s)	335, 419, 858
SatI	GCNGC	6 cut(s)	137, 585, 642, 645, 648, 657
Sau3AI	GATC	3 cut(s)	233, 604, 754
Sau96I	GGNCC	1 cut(s)	739
SchI	GAGTC	2 cut(s)	679, 690
ScrFI	CCNGG	2 cut(s)	28, 552
SduI	GDGCHC	2 cut(s)	352, 358
SfaNI	GCATC	3 cut(s)	148, 442, 469
SfcI	CTRYAG	1 cut(s)	645
SinI	GGWCC	1 cut(s)	739
SmiMI	CAYNNNNRTG	2 cut(s)	404, 704
SmlI	CTYRAG	2 cut(s)	68, 149
SmoI	CTYRAG	2 cut(s)	68, 149
SpeI	ACTAGT	2 cut(s)	130, 305
SphI	GCATGC	1 cut(s)	832
Sse9I	AATT	3 cut(s)	106, 556, 940
SspMI	CTAG	4 cut(s)	131, 306, 578, 807
StyD4I	CCNGG	2 cut(s)	26, 550
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	1 cut(s)	817
TaiI	ACGT	4 cut(s)	175, 320, 349, 793
TaqI	TCGA	3 cut(s)	614, 663, 711
TasI	AATT	3 cut(s)	106, 556, 940
TatI	WGTACW	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	3 cut(s)	335, 419, 858
Tru9I	TTAA	3 cut(s)	335, 419, 858
TscAI	CASTG	2 cut(s)	235, 820
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	6 cut(s)	136, 584, 641, 644, 647, 656
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	321, 587, 934
TspRI	CASTG	2 cut(s)	235, 820
VpaK11BI	GGWCC	1 cut(s)	739
XapI	RAATTY	1 cut(s)	940
XceI	RCATGY	2 cut(s)	303, 832
XspI	CTAG	4 cut(s)	131, 306, 578, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.