Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003735

Physical Location & Seq

Genomic Coordinates Forward (+)

3754686 .. 3756325

Gene Structure 1640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0031400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCTTTCTCCAATGTTGAGTCTAACCAGTTGGATGGTGGCCTTAACAATGCTCTGTCTGAACCAGCAATCTTGTTTTTGCCTAGACTGGTTAGAGAGCTTGATGCTGCAGCAGTCAAAATTCAAAAGGTTTACAAGAGTTATCGAACTCGAAGAAACCTTGCAGATTGTGCAGTGGCGGCTGAGGAGCTATGGTGGAGAGATACGTTAGATTCTCCAGCGGGTGCTAAAGAGCTATGGTGGAAAACTTTAGATTCTGCAGCTCTCAAGCAGAGTTCTGTTCAGAAACCGCCGTTTCGCGGTGGGCAAGGGCTAGCTAGGACTAGAGCTGCTAAGATTGGAAAAGGTTTGTCTAAGGATGAGAAAGCACAAATGTTAGCGCTTCAACATTGGCTTGAAGCTATTGATCCACGCCACCGCTATGGACACAATTTACATTTCTATTATGATTTGTGGTTTGAAAGTGAGAGCAGTCAGCCTTTCTTCTACTGGCTGGATGTTGGAGATGGCAAAGAAATAAATCTCGAGAGATGCTCGAGGACAGCTCTACAGCACCAATGCATCGAGTACCTTGGACCGAAAGAAAGGAAATCCCATGAAGTATTAGTGGAAAATGGCAAGCTAATGTATAAGCAAAGTGGGATGCTTGTGAATAGTAGTGAAGGTTCCAAATCGATATTCGTGCTAAGCACAACAAGGGCTTTGTATGTTGGTCAGAAGAAGGGTCAGTTTGACCATTTGAGTTTTCTATCTGGAGGTGCTACCACAGCAGCTGGAAGATTGGTTGCCCATGATGGGGTTCTTGAGGCCATTTGGCCATACAGTGATCATTACGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0072583 GO:0097708 GO:0098657 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

BAR SH3_9

Protein Analysis

279

Amino Acids

31.41

Weight (kDa)

8.61

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39020
fragaria_vesca	FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_3g27182
malus_domestica	MD05G1056500.v1.1 MD10G1064500.v1.1
prunus_persica	Prupe.8G086700_v2.0.a1 Prupe.8G086700_v2.0.a1
pyrus_communis	pycom05g04810 pycom10g05040
rosa_chinensis	RchiOBHm_Chr2g0102681 RchiOBHm_Chr6g0267341
rosa_laevigata	RLG00000014014
rosa_multiflora	Rmu_co8352115.1_g000001 Rmu_co8477675.1_g000001 Rmu_sc0000693.1_g000022 Rmu_sc0002077.1_g000001 Rmu_sc0002639.1_g000012 Rmu_sc0008034.1_g000007 Rmu_sc0028141.1_g000001 Rmu_sc0040922.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266630 Rroxscaffold_7G00200930
rosa_rugosa	Rorug02G0109200 Rorug06G0031400
rosa_samantha	Rh2CG163000 Rh6AG153300 Rh6BG153000 Rh6CG149200 Rh6DG137400
rosa_wichuraiana	Rw6G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	300
AciI	CCGC	5 cut(s)	179, 221, 290, 300, 418
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	1 cut(s)	815
AcsI	RAATTY	1 cut(s)	120
AfaI	GTAC	1 cut(s)	569
AfeI	AGCGCT	1 cut(s)	381
AfiI	CCNNNNNNNGG	3 cut(s)	299, 795, 796
AgsI	TTSAA	4 cut(s)	125, 386, 398, 461
AjuI	GAANNNNNNNTTGG	2 cut(s)	662, 694
AlwI	GGATC	1 cut(s)	401
AlwNI	CAGNNNCTG	1 cut(s)	773
Ama87I	CYCGRG	2 cut(s)	524, 535
Aor51HI	AGCGCT	1 cut(s)	381
AoxI	GGCC	3 cut(s)	40, 807, 815
ApeKI	GCWGC	5 cut(s)	107, 110, 260, 329, 770
ApoI	RAATTY	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	575
AsuNHI	GCTAGC	1 cut(s)	313
AvaI	CYCGRG	2 cut(s)	524, 535
AvaII	GGWCC	1 cut(s)	575
BalI	TGGCCA	1 cut(s)	817
BbvCI	CCTCAGC	1 cut(s)	183
BbvI	GCAGC	5 cut(s)	94, 122, 272, 316, 782
BccI	CCATC	3 cut(s)	29, 500, 788
BceAI	ACGGC	1 cut(s)	277
BcgI	CGANNNNNNTGC	2 cut(s)	664, 698
BclI	TGATCA	1 cut(s)	826
BfaI	CTAG	4 cut(s)	84, 314, 318, 324
BfmI	CTRYAG	3 cut(s)	108, 258, 548
BfoI	RGCGCY	1 cut(s)	383
BisI	GCNGC	6 cut(s)	108, 111, 180, 261, 330, 771
BlpI	GCTNAGC	1 cut(s)	686
BlsI	GCNGC	6 cut(s)	109, 112, 181, 262, 331, 772
Bme18I	GGWCC	1 cut(s)	575
BmeT110I	CYCGRG	2 cut(s)	524, 535
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	1 cut(s)	667
BmsI	GCATC	4 cut(s)	94, 521, 570, 633
BmtI	GCTAGC	1 cut(s)	317
BplI	GAGNNNNNCTC	4 cut(s)	518, 550, 529, 561
BpmI	CTGGAG	2 cut(s)	201, 774
Bpu10I	CCTNAGC	1 cut(s)	183
Bpu1102I	GCTNAGC	1 cut(s)	686
BpuEI	CTTGAG	2 cut(s)	251, 824
Bsa29I	ATCGAT	1 cut(s)	674
BsaJI	CCNNGG	1 cut(s)	571
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	3 cut(s)	299, 795, 796
Bse1I	ACTGG	3 cut(s)	28, 93, 494
BseCI	ATCGAT	1 cut(s)	674
BseDI	CCNNGG	1 cut(s)	571
BseGI	GGATG	4 cut(s)	40, 364, 502, 648
BseLI	CCNNNNNNNGG	3 cut(s)	299, 795, 796
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	3 cut(s)	28, 93, 494
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	5 cut(s)	94, 122, 272, 316, 782
BsgI	GTGCAG	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	3 cut(s)	42, 809, 817
BshVI	ATCGAT	1 cut(s)	674
BsiHKCI	CYCGRG	2 cut(s)	524, 535
BslI	CCNNNNNNNGG	3 cut(s)	299, 795, 796
BsnI	GGCC	3 cut(s)	42, 809, 817
BsoBI	CYCGRG	2 cut(s)	524, 535
Bsp143I	GATC	2 cut(s)	406, 826
Bsp1720I	GCTNAGC	1 cut(s)	686
BspACI	CCGC	5 cut(s)	179, 221, 290, 300, 418
BspANI	GGCC	3 cut(s)	42, 809, 817
BspCNI	CTCAG	1 cut(s)	175
BspDI	ATCGAT	1 cut(s)	674
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	667
BspMAI	CTGCAG	2 cut(s)	112, 262
BspOI	GCTAGC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	401
BsrI	ACTGG	3 cut(s)	28, 93, 494
BssECI	CCNNGG	1 cut(s)	571
BssMI	GATC	2 cut(s)	406, 826
BssT1I	CCWWGG	1 cut(s)	571
Bst4CI	ACNGT	1 cut(s)	824
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	315, 620
BstDEI	CTNAG	4 cut(s)	183, 333, 354, 686
BstF5I	GGATG	4 cut(s)	40, 364, 502, 648
BstFNI	CGCG	1 cut(s)	300
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	2 cut(s)	409, 829
BstMBI	GATC	2 cut(s)	406, 826
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 179, 767
BstSFI	CTRYAG	3 cut(s)	108, 258, 548
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	5 cut(s)	94, 122, 272, 316, 782
BstXI	CCANNNNNNTGG	2 cut(s)	35, 422
Bsu15I	ATCGAT	1 cut(s)	674
BsuRI	GGCC	3 cut(s)	42, 809, 817
BsuTUI	ATCGAT	1 cut(s)	674
BtsCI	GGATG	4 cut(s)	40, 364, 502, 648
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	180, 829
Cac8I	GCNNGC	2 cut(s)	315, 620
CaiI	CAGNNNCTG	1 cut(s)	773
CfoI	GCGC	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	575
ClaI	ATCGAT	1 cut(s)	674
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	2 cut(s)	596, 791
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	4 cut(s)	183, 333, 354, 686
DpnI	GATC	2 cut(s)	408, 828
DpnII	GATC	2 cut(s)	406, 826
EaeI	YGGCCR	1 cut(s)	815
Eco130I	CCWWGG	1 cut(s)	571
Eco47I	GGWCC	1 cut(s)	575
Eco47III	AGCGCT	1 cut(s)	381
Eco88I	CYCGRG	2 cut(s)	524, 535
EcoT14I	CCWWGG	1 cut(s)	571
EcoT22I	ATGCAT	1 cut(s)	563
ErhI	CCWWGG	1 cut(s)	571
FaeI	CATG	2 cut(s)	599, 794
FaiI	YATR	9 cut(s)	193, 238, 423, 447, 597, 630, 708, 792, 820
FatI	CATG	2 cut(s)	595, 790
FauI	CCCGC	1 cut(s)	214
FbaI	TGATCA	1 cut(s)	826
Fnu4HI	GCNGC	6 cut(s)	108, 111, 180, 261, 330, 771
FokI	GGATG	4 cut(s)	47, 371, 509, 655
Fsp4HI	GCNGC	6 cut(s)	108, 111, 180, 261, 330, 771
FspBI	CTAG	4 cut(s)	84, 314, 318, 324
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	6 cut(s)	108, 111, 180, 261, 330, 771
GsuI	CTGGAG	2 cut(s)	201, 774
HaeII	RGCGCY	1 cut(s)	383
HaeIII	GGCC	3 cut(s)	42, 809, 817
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	2 cut(s)	599, 794
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HinfI	GANTC	3 cut(s)	20, 212, 254
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	61, 285, 717
Hpy188III	TCNNGA	4 cut(s)	524, 526, 753, 803
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	656, 715
HpyCH4III	ACNGT	1 cut(s)	824
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	5 cut(s)	110, 164, 173, 260, 561
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 179, 767
HpyF3I	CTNAG	4 cut(s)	183, 333, 354, 686
HpySE526I	ACGT	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	599, 794
HspAI	GCGC	1 cut(s)	380
Ksp22I	TGATCA	1 cut(s)	826
Kzo9I	GATC	2 cut(s)	406, 826
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	8 cut(s)	41, 74, 78, 231, 475, 479, 738, 759
Lsp1109I	GCAGC	5 cut(s)	94, 122, 272, 316, 782
LweI	GCATC	4 cut(s)	94, 521, 570, 633
MaeI	CTAG	4 cut(s)	84, 314, 318, 324
MaeII	ACGT	1 cut(s)	206
MalI	GATC	2 cut(s)	408, 828
MboI	GATC	2 cut(s)	406, 826
MboII	GAAGA	4 cut(s)	165, 475, 730, 789
MlsI	TGGCCA	1 cut(s)	817
MluCI	AATT	2 cut(s)	120, 430
MluNI	TGGCCA	1 cut(s)	817
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	2 cut(s)	12, 481
MnlI	CCTC	4 cut(s)	178, 531, 749, 799
Mox20I	TGGCCA	1 cut(s)	817
Mph1103I	ATGCAT	1 cut(s)	563
MscI	TGGCCA	1 cut(s)	817
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	817
MspA1I	CMGCKG	2 cut(s)	221, 773
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	3 cut(s)	170, 179, 767
NdeII	GATC	2 cut(s)	406, 826
NheI	GCTAGC	1 cut(s)	313
NlaIII	CATG	2 cut(s)	599, 794
NlaIV	GGNNCC	1 cut(s)	667
NsiI	ATGCAT	1 cut(s)	563
PaeR7I	CTCGAG	2 cut(s)	524, 535
PfeI	GAWTC	2 cut(s)	212, 254
PkrI	GCNGC	6 cut(s)	109, 112, 181, 262, 331, 772
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	667
PspPI	GGNCC	1 cut(s)	575
PspXI	VCTCGAGB	1 cut(s)	535
PsrI	GAACNNNNNNTAC	2 cut(s)	649, 681
PstI	CTGCAG	2 cut(s)	112, 262
PstNI	CAGNNNCTG	1 cut(s)	773
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
RseI	CAYNNNNRTG	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	6 cut(s)	108, 111, 180, 261, 330, 771
Sau3AI	GATC	2 cut(s)	406, 826
Sau96I	GGNCC	1 cut(s)	575
SchI	GAGTC	1 cut(s)	29
SfaNI	GCATC	4 cut(s)	94, 521, 570, 633
SfcI	CTRYAG	3 cut(s)	108, 258, 548
Sfr274I	CTCGAG	2 cut(s)	524, 535
SinI	GGWCC	1 cut(s)	575
SlaI	CTCGAG	2 cut(s)	524, 535
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	4 cut(s)	266, 524, 535, 803
SmoI	CTYRAG	4 cut(s)	266, 524, 535, 803
Sse9I	AATT	2 cut(s)	120, 430
SsiI	CCGC	5 cut(s)	179, 221, 290, 300, 418
SspMI	CTAG	4 cut(s)	84, 314, 318, 324
StyI	CCWWGG	1 cut(s)	571
TaaI	ACNGT	1 cut(s)	824
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	6 cut(s)	145, 151, 525, 536, 564, 674
TaqII	GACCGA	1 cut(s)	592
TasI	AATT	2 cut(s)	120, 430
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	2 cut(s)	212, 254
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	2 cut(s)	180, 829
TseI	GCWGC	5 cut(s)	107, 110, 260, 329, 770
TspDTI	ATGAA	1 cut(s)	612
TspRI	CASTG	2 cut(s)	180, 829
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	35
XhoI	CTCGAG	2 cut(s)	524, 535
XspI	CTAG	4 cut(s)	84, 314, 318, 324
Zsp2I	ATGCAT	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.