Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003735

Physical Location & Seq

Genomic Coordinates Reverse (-)

11957962 .. 11962651

Gene Structure 4690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G086700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGACGCTATCAGAAAGCAAGCCACCAGGCTTCGCGAACAGGTCGCTAGGCAACAACAGGCTGTCCTCAAGCAGTTTGGAGCTGGAGGATATGGAGGTTCAGATAATTTAGTTACTGATGAGGCAGAACTCCTGCAGCATCAGAAACTTGAGAGGCTTTACATATCAACACGTGCTGGCAAGCATTATCAAAGGGATATTGTTCGTGGTGTGGAGGGATATATTGTCACTGGGTCCAAACAAGTTGAAATAGGAACAAAGTTGTCAGAAGATAGCAGGAAATATGGTGCTGAAAATACATGTACTAGTGGTAGTACATTATCAAGAGCTTCATTAAGCTATGGGCGAGCTCGCGCTCAAATGGAGAAGGAGCGGGGGAATCTATTGAAAGCTCTTGGCACACAGGTGGCAGAGCCATTAAGAGCGATGGTAATGGGGGCCCCATTGGAGGATGCTCGGCATCTTGCTCAACGTTATGATAGAATGCGACAAGAAGCTGAAGCTCAGGCTATTGAAGTTTCCAAACGCCAAGTAAAAGTGAGGGAAACACCAGGAAATGCAGAGAATGTTATGAAACTGGAAGCTGCAGAGTCAAAGCTGCAAGATCTGAAGTCAAATATGGGAATATTAGGGAAGGAAGCTGCTGCAGCAATGGCAGCTGTTGAGGCTCAACAACAGAGGTTGACTCTCCAGCGCCTCATTGCTATGGTTGAGGCAGAACGTACTTATCATCAGAGGATCCTTCAGATACTTGATCAACTTGAAGGAGAGATGGTATCAGAACGACAACGAATTGAAGCGCCTCCTAGCCCTACTGTTGATAACACCATGCCTCCACCCCCACCTTATGAAGAAGTTAATGGCATATATGCTTCTCAAACACATAATGGATCGTCAGACATCATGAATTACTTCCTAGGGGAGGTTATGTTTACATATCAAGCGGTATCTGACGTGGAGCTCAGTTTGTCAGTTGGAGACTATGTAGTTGTGCGAAAGGTGACAAACAATGGTTGGGCAGAAGGTGAATGCAAAGGCAGGGCAGGCTGGTTCCCATTTGGATACATTGAAAGAAGGGAACGAGTACTTGCAAGCAAGGTGGCAGAAGTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0072583 GO:0097708 GO:0098657 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

BAR SH3_9

Protein Analysis

372

Amino Acids

41.36

Weight (kDa)

7.0

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39020
fragaria_vesca	FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_3g27182
malus_domestica	MD05G1056500.v1.1 MD10G1064500.v1.1
prunus_persica	Prupe.8G086700_v2.0.a1 Prupe.8G086700_v2.0.a1
pyrus_communis	pycom05g04810 pycom10g05040
rosa_chinensis	RchiOBHm_Chr2g0102681 RchiOBHm_Chr6g0267341
rosa_laevigata	RLG00000014014
rosa_multiflora	Rmu_co8352115.1_g000001 Rmu_co8477675.1_g000001 Rmu_sc0000693.1_g000022 Rmu_sc0002077.1_g000001 Rmu_sc0002639.1_g000012 Rmu_sc0008034.1_g000007 Rmu_sc0028141.1_g000001 Rmu_sc0040922.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266630 Rroxscaffold_7G00200930
rosa_rugosa	Rorug02G0109200 Rorug06G0031400
rosa_samantha	Rh2CG163000 Rh6AG153300 Rh6BG153000 Rh6CG149200 Rh6DG137400
rosa_wichuraiana	Rw6G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	373
AccII	CGCG	2 cut(s)	36, 354
AciI	CCGC	2 cut(s)	373, 944
AclI	AACGTT	1 cut(s)	472
AclWI	GGATC	3 cut(s)	733, 746, 898
AcuI	CTGAAG	3 cut(s)	519, 629, 728
AcvI	CACGTG	1 cut(s)	173
AfaI	GTAC	4 cut(s)	304, 316, 724, 1086
AfiI	CCNNNNNNNGG	2 cut(s)	448, 922
AflIII	ACRYGT	2 cut(s)	170, 299
AgsI	TTSAA	6 cut(s)	248, 388, 515, 764, 797, 1070
AhlI	ACTAGT	1 cut(s)	305
AjiI	CACGTC	1 cut(s)	955
AjnI	CCWGG	2 cut(s)	26, 550
AleI	CACNNNNGTG	1 cut(s)	404
Alw21I	GWGCWC	2 cut(s)	352, 963
Alw26I	GTCTC	1 cut(s)	972
AlwI	GGATC	3 cut(s)	733, 746, 898
AoxI	GGCC	1 cut(s)	438
ApaI	GGGCCC	1 cut(s)	442
ApeKI	GCWGC	7 cut(s)	136, 584, 598, 641, 644, 647, 656
Asp700I	GAANNNNTTC	1 cut(s)	911
AspA2I	CCTAGG	1 cut(s)	916
AspLEI	GCGC	3 cut(s)	356, 696, 802
AspS9I	GGNCC	3 cut(s)	234, 438, 439
AsuHPI	GGTGA	2 cut(s)	1012, 1037
AvaII	GGWCC	1 cut(s)	234
AvrII	CCTAGG	1 cut(s)	916
BaeGI	GKGCMC	1 cut(s)	442
BamHI	GGATCC	1 cut(s)	738
BanII	GRGCYC	3 cut(s)	352, 442, 963
BbrPI	CACGTG	1 cut(s)	173
Bbv12I	GWGCWC	2 cut(s)	352, 963
BbvI	GCAGC	7 cut(s)	148, 571, 585, 628, 631, 659, 668
BccI	CCATC	2 cut(s)	421, 766
BciT130I	CCWGG	2 cut(s)	28, 552
BciVI	GTATCC	1 cut(s)	1055
BclI	TGATCA	1 cut(s)	754
BcoDI	GTCTC	1 cut(s)	972
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	4 cut(s)	48, 306, 807, 917
BfmI	CTRYAG	3 cut(s)	134, 585, 645
BfoI	RGCGCY	2 cut(s)	697, 803
BfuI	GTATCC	1 cut(s)	1055
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	7 cut(s)	137, 585, 599, 642, 645, 648, 657
BlnI	CCTAGG	1 cut(s)	916
BlsI	GCNGC	7 cut(s)	138, 586, 600, 643, 646, 649, 658
BmcAI	AGTACT	1 cut(s)	1086
Bme1390I	CCNGG	2 cut(s)	28, 552
Bme18I	GGWCC	1 cut(s)	234
BmgBI	CACGTC	1 cut(s)	955
BmgT120I	GGNCC	3 cut(s)	234, 438, 439
BmiI	GGNNCC	6 cut(s)	235, 439, 440, 441, 740, 1052
BmrFI	CCNGG	2 cut(s)	28, 552
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	3 cut(s)	148, 442, 469
BmuI	ACTGGG	1 cut(s)	240
BplI	GAGNNNNNCTC	2 cut(s)	670, 702
BpmI	CTGGAG	2 cut(s)	105, 674
Bpu10I	CCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	2 cut(s)	53, 170
BsaAI	YACGTR	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	916
BsaXI	ACNNNNNCTCC	8 cut(s)	759, 789, 817, 847, 914, 944, 969, 999
Bsc4I	CCNNNNNNNGG	2 cut(s)	448, 922
Bse1I	ACTGG	2 cut(s)	235, 582
Bse3DI	GCAATG	2 cut(s)	657, 699
BseBI	CCWGG	2 cut(s)	28, 552
BseDI	CCNNGG	1 cut(s)	916
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	2 cut(s)	448, 922
BseMI	GCAATG	2 cut(s)	657, 699
BseMII	CTCAG	2 cut(s)	518, 976
BseNI	ACTGG	2 cut(s)	235, 582
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	7 cut(s)	148, 571, 585, 628, 631, 659, 668
Bsh1236I	CGCG	2 cut(s)	36, 354
BshFI	GGCC	1 cut(s)	440
BsiHKAI	GWGCWC	2 cut(s)	352, 963
BslI	CCNNNNNNNGG	2 cut(s)	448, 922
BsmAI	GTCTC	1 cut(s)	972
BsmI	GAATGC	2 cut(s)	489, 1034
BsnI	GGCC	1 cut(s)	440
Bsp120I	GGGCCC	1 cut(s)	438
Bsp1286I	GDGCHC	3 cut(s)	352, 442, 963
Bsp143I	GATC	4 cut(s)	604, 738, 754, 890
Bsp68I	TCGCGA	1 cut(s)	36
BspACI	CCGC	2 cut(s)	373, 944
BspANI	GGCC	1 cut(s)	440
BspCNI	CTCAG	2 cut(s)	517, 975
BspFNI	CGCG	2 cut(s)	36, 354
BspHI	TCATGA	1 cut(s)	903
BspLI	GGNNCC	6 cut(s)	235, 439, 440, 441, 740, 1052
BspMAI	CTGCAG	3 cut(s)	138, 589, 649
BspPI	GGATC	3 cut(s)	733, 746, 898
BsrBI	CCGCTC	1 cut(s)	373
BsrDI	GCAATG	2 cut(s)	657, 699
BsrI	ACTGG	2 cut(s)	235, 582
BssECI	CCNNGG	1 cut(s)	916
BssMI	GATC	4 cut(s)	604, 738, 754, 890
BssT1I	CCWWGG	1 cut(s)	916
Bst2UI	CCWGG	2 cut(s)	28, 552
Bst4CI	ACNGT	1 cut(s)	817
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	7 cut(s)	21, 178, 182, 348, 352, 1045, 1093
BstDEI	CTNAG	2 cut(s)	504, 962
BstENI	CCTNNNNNAGG	1 cut(s)	920
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	2 cut(s)	36, 354
BstH2I	RGCGCY	2 cut(s)	697, 803
BstHHI	GCGC	3 cut(s)	356, 696, 802
BstKTI	GATC	4 cut(s)	607, 741, 757, 893
BstMAI	GTCTC	1 cut(s)	972
BstMBI	GATC	4 cut(s)	604, 738, 754, 890
BstMWI	GCNNNNNNNGC	5 cut(s)	647, 653, 656, 665, 1044
BstNI	CCWGG	2 cut(s)	28, 552
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	2 cut(s)	26, 550
BstSFI	CTRYAG	3 cut(s)	134, 585, 645
BstSLI	GKGCMC	1 cut(s)	442
BstUI	CGCG	2 cut(s)	36, 354
BstV1I	GCAGC	7 cut(s)	148, 571, 585, 628, 631, 659, 668
BstX2I	RGATCY	2 cut(s)	604, 738
BstYI	RGATCY	2 cut(s)	604, 738
BsuI	GTATCC	1 cut(s)	1055
BsuRI	GGCC	1 cut(s)	440
BtgZI	GCGATG	1 cut(s)	440
BtrI	CACGTC	1 cut(s)	955
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	228
BtuMI	TCGCGA	1 cut(s)	36
Cac8I	GCNNGC	7 cut(s)	21, 178, 182, 348, 352, 1045, 1093
CciI	TCATGA	1 cut(s)	903
CfoI	GCGC	3 cut(s)	356, 696, 802
Cfr13I	GGNCC	3 cut(s)	234, 438, 439
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	4 cut(s)	303, 315, 723, 1085
CspCI	CAANNNNNGTGG	2 cut(s)	1080, 1115
CviAII	CATG	3 cut(s)	300, 829, 904
CviQI	GTAC	4 cut(s)	303, 315, 723, 1085
DdeI	CTNAG	2 cut(s)	504, 962
DpnI	GATC	4 cut(s)	606, 740, 756, 892
DpnII	GATC	4 cut(s)	604, 738, 754, 890
Ecl136II	GAGCTC	2 cut(s)	350, 961
Eco130I	CCWWGG	1 cut(s)	916
Eco24I	GRGCYC	3 cut(s)	352, 442, 963
Eco47I	GGWCC	1 cut(s)	234
Eco53kI	GAGCTC	2 cut(s)	350, 961
Eco57I	CTGAAG	3 cut(s)	519, 629, 728
Eco72I	CACGTG	1 cut(s)	173
EcoICRI	GAGCTC	2 cut(s)	350, 961
EcoNI	CCTNNNNNAGG	1 cut(s)	920
EcoO109I	RGGNCCY	2 cut(s)	438, 439
EcoRII	CCWGG	2 cut(s)	26, 550
EcoT14I	CCWWGG	1 cut(s)	916
EcoT38I	GRGCYC	3 cut(s)	352, 442, 963
ErhI	CCWWGG	1 cut(s)	916
FaeI	CATG	3 cut(s)	303, 832, 907
FatI	CATG	3 cut(s)	299, 828, 903
FauI	CCCGC	1 cut(s)	366
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	7 cut(s)	137, 585, 599, 642, 645, 648, 657
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	3 cut(s)	352, 442, 963
Fsp4HI	GCNGC	7 cut(s)	137, 585, 599, 642, 645, 648, 657
FspBI	CTAG	4 cut(s)	48, 306, 807, 917
GlaI	GCGC	3 cut(s)	355, 695, 801
GluI	GCNGC	7 cut(s)	137, 585, 599, 642, 645, 648, 657
GsuI	CTGGAG	2 cut(s)	105, 674
HaeII	RGCGCY	2 cut(s)	697, 803
HaeIII	GGCC	1 cut(s)	440
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	3 cut(s)	356, 696, 802
Hin1II	CATG	3 cut(s)	303, 832, 907
Hin6I	GCGC	3 cut(s)	354, 694, 800
HinP1I	GCGC	3 cut(s)	354, 694, 800
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HinfI	GANTC	3 cut(s)	379, 590, 685
HphI	GGTGA	2 cut(s)	1012, 1037
Hpy166II	GTNNAC	2 cut(s)	684, 933
Hpy188III	TCNNGA	3 cut(s)	35, 324, 904
Hpy8I	GTNNAC	2 cut(s)	684, 933
HpyAV	CCTTC	6 cut(s)	361, 628, 752, 758, 1016, 1068
HpyCH4III	ACNGT	1 cut(s)	817
HpyCH4IV	ACGT	4 cut(s)	172, 472, 721, 954
HpyCH4V	TGCA	7 cut(s)	136, 560, 587, 601, 647, 1032, 1091
HpyF10VI	GCNNNNNNNGC	5 cut(s)	647, 653, 656, 665, 1044
HpyF3I	CTNAG	2 cut(s)	504, 962
HpySE526I	ACGT	4 cut(s)	172, 472, 721, 954
Hsp92II	CATG	3 cut(s)	303, 832, 907
HspAI	GCGC	3 cut(s)	354, 694, 800
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	4 cut(s)	604, 738, 754, 890
LmnI	GCTCC	3 cut(s)	80, 370, 958
Lsp1109I	GCAGC	7 cut(s)	148, 571, 585, 628, 631, 659, 668
LweI	GCATC	3 cut(s)	148, 442, 469
MaeI	CTAG	4 cut(s)	48, 306, 807, 917
MaeII	ACGT	4 cut(s)	172, 472, 721, 954
MaeIII	GTNAC	3 cut(s)	112, 226, 1000
MalI	GATC	4 cut(s)	606, 740, 756, 892
MbiI	CCGCTC	1 cut(s)	373
MboI	GATC	4 cut(s)	604, 738, 754, 890
MboII	GAAGA	2 cut(s)	281, 863
MflI	RGATCY	2 cut(s)	604, 738
MhlI	GDGCHC	3 cut(s)	352, 442, 963
MluCI	AATT	3 cut(s)	106, 792, 907
MlyI	GAGTC	2 cut(s)	599, 679
MmeI	TCCRAC	1 cut(s)	955
MroXI	GAANNNNTTC	1 cut(s)	911
MseI	TTAA	3 cut(s)	335, 419, 858
MslI	CAYNNNNRTG	2 cut(s)	404, 704
MspA1I	CMGCKG	1 cut(s)	659
MspR9I	CCNGG	2 cut(s)	28, 552
Mva1269I	GAATGC	2 cut(s)	489, 1034
MvaI	CCWGG	2 cut(s)	28, 552
MvnI	CGCG	2 cut(s)	36, 354
MwoI	GCNNNNNNNGC	5 cut(s)	647, 653, 656, 665, 1044
NdeII	GATC	4 cut(s)	604, 738, 754, 890
NlaIII	CATG	3 cut(s)	303, 832, 907
NlaIV	GGNNCC	6 cut(s)	235, 439, 440, 441, 740, 1052
NmeAIII	GCCGAG	1 cut(s)	436
NmuCI	GTSAC	2 cut(s)	226, 1000
NruI	TCGCGA	1 cut(s)	36
NspI	RCATGY	1 cut(s)	303
OliI	CACNNNNGTG	1 cut(s)	404
PagI	TCATGA	1 cut(s)	903
PciI	ACATGT	1 cut(s)	299
PctI	GAATGC	2 cut(s)	489, 1034
PdmI	GAANNNNTTC	1 cut(s)	911
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	7 cut(s)	138, 586, 600, 643, 646, 649, 658
PleI	GAGTC	2 cut(s)	598, 679
PmaCI	CACGTG	1 cut(s)	173
PmlI	CACGTG	1 cut(s)	173
PpsI	GAGTC	2 cut(s)	598, 679
Ppu21I	YACGTR	1 cut(s)	173
PscI	ACATGT	1 cut(s)	299
Psp124BI	GAGCTC	2 cut(s)	352, 963
Psp1406I	AACGTT	1 cut(s)	472
Psp6I	CCWGG	2 cut(s)	26, 550
PspCI	CACGTG	1 cut(s)	173
PspGI	CCWGG	2 cut(s)	26, 550
PspN4I	GGNNCC	6 cut(s)	235, 439, 440, 441, 740, 1052
PspOMI	GGGCCC	1 cut(s)	438
PspPI	GGNCC	3 cut(s)	234, 438, 439
PstI	CTGCAG	3 cut(s)	138, 589, 649
PsuI	RGATCY	2 cut(s)	604, 738
PvuII	CAGCTG	1 cut(s)	659
RruI	TCGCGA	1 cut(s)	36
RsaI	GTAC	4 cut(s)	304, 316, 724, 1086
RsaNI	GTAC	4 cut(s)	303, 315, 723, 1085
RseI	CAYNNNNRTG	2 cut(s)	404, 704
SacI	GAGCTC	2 cut(s)	352, 963
SaqAI	TTAA	3 cut(s)	335, 419, 858
SatI	GCNGC	7 cut(s)	137, 585, 599, 642, 645, 648, 657
Sau3AI	GATC	4 cut(s)	604, 738, 754, 890
Sau96I	GGNCC	3 cut(s)	234, 438, 439
ScaI	AGTACT	1 cut(s)	1086
SchI	GAGTC	2 cut(s)	599, 679
ScrFI	CCNGG	2 cut(s)	28, 552
SduI	GDGCHC	3 cut(s)	352, 442, 963
SfaNI	GCATC	3 cut(s)	148, 442, 469
SfcI	CTRYAG	3 cut(s)	134, 585, 645
SinI	GGWCC	1 cut(s)	234
SmiMI	CAYNNNNRTG	2 cut(s)	404, 704
SmlI	CTYRAG	2 cut(s)	68, 149
SmoI	CTYRAG	2 cut(s)	68, 149
SpeI	ACTAGT	1 cut(s)	305
Sse9I	AATT	3 cut(s)	106, 792, 907
SsiI	CCGC	2 cut(s)	373, 944
SspI	AATATT	1 cut(s)	627
SspMI	CTAG	4 cut(s)	48, 306, 807, 917
SstI	GAGCTC	2 cut(s)	352, 963
StyD4I	CCNGG	2 cut(s)	26, 550
StyI	CCWWGG	1 cut(s)	916
TaaI	ACNGT	1 cut(s)	817
TaiI	ACGT	4 cut(s)	175, 475, 724, 957
TasI	AATT	3 cut(s)	106, 792, 907
TatI	WGTACW	3 cut(s)	302, 314, 1084
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	3 cut(s)	335, 419, 858
Tru9I	TTAA	3 cut(s)	335, 419, 858
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	2 cut(s)	226, 1000
TseI	GCWGC	7 cut(s)	136, 584, 598, 641, 644, 647, 656
Tsp45I	GTSAC	2 cut(s)	226, 1000
TspDTI	ATGAA	4 cut(s)	321, 587, 864, 920
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	234
XagI	CCTNNNNNAGG	1 cut(s)	920
XceI	RCATGY	1 cut(s)	303
XmaJI	CCTAGG	1 cut(s)	916
XmnI	GAANNNNTTC	1 cut(s)	911
XspI	CTAG	4 cut(s)	48, 306, 807, 917
ZrmI	AGTACT	1 cut(s)	1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.