Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003735

Physical Location & Seq

Genomic Coordinates Forward (+)

48403857 .. 48408338

Gene Structure 4482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCTGTCCTCAAGCAGTTTGGAGCTGGAGGATATGGAGGTTCAGATAATTTAGTTACTGATGAGGCAGAACTAGTGCAGCATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTTCGTGGTGTGGAGGGATATATTGTCACCGGATCCAAACAGGTTGAAATAGGAACAAAGTTGTCTGAAGATAGCAGGAAATATGGAGCTGAAAATACATGTACTAGTGGTAGTACGTTATCAAGAGCTTCATTAAGCTATGGACGTGCTCGTGCTCAAATGGAGAAGGAACGAGGGAATCTGTTGAAAGCTCTTGGCACACAGGTGGCAGAGCCATTAAGAGCAATGGTAATGGGCGCTCCATTGGAAGATGCTCGGCATCTTGCTCAACGATATGACAGAATGCGACAAGAAGCTGAAGCTCAGGCTATTGAAGTTTCCAAACGCCAAGCAAAAGTGAGGGAAACACCAGGCAATTCAGATAATGTTATGAAACTAGAAGCAGCAGAAGCAAAGTTGCAAGATCTGAAGTTGAATATGGGTATATTAGGGAAGGAAGCAGCTGCAGCGATGGCAGCAGTCGAGGCTCAACAACAGAGATTGACTCTCCAGAGACTCATTGCCATGGTCGAGGCAGAGCGTACTTATCATCAGAGGATCCTTCACATTCTTGATCAACTTGAAGGAGAGATGGTATCAGAACGACAACGTATTGAAGCACCTCCTAGCCCCACTGTTGACAACAGCATGCCTCCACCCCCACCTTATGAGGAAGTTAATGGTATATATGCTTCTCAAACACATAATGGATTGTCAGACAGCATGGATTACTTCTTGGGGGAGGTTATGTTTACATATCAAGCTGTATCTGACGTGGAGCTCAGTTTGTCAATTGGTGACTATGTTGTTGTGCGAAAGGTAACCAACAATGGTTGGGCAGAAGGCGAATGCAAAGGCAAAGCAGGTTGGTTCCCATTGGGATACATTGAAAGACGGGAACGAGTTCTTGCAAGCAAGGTGGCTGAAGTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0072583 GO:0097708 GO:0098657 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

BAR SH3_9

Protein Analysis

352

Amino Acids

38.97

Weight (kDa)

5.99

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_9	PF14604	290 - 338	1.5e-09	Variant SH3 domain
SH3_2	PF07653	290 - 337	1.9e-07	Variant SH3 domain
SH3_1	PF00018	291 - 333	4.2e-08	SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39020
fragaria_vesca	FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_3g27182
malus_domestica	MD05G1056500.v1.1 MD10G1064500.v1.1
prunus_persica	Prupe.8G086700_v2.0.a1 Prupe.8G086700_v2.0.a1
pyrus_communis	pycom05g04810 pycom10g05040
rosa_chinensis	RchiOBHm_Chr2g0102681 RchiOBHm_Chr6g0267341
rosa_laevigata	RLG00000014014
rosa_multiflora	Rmu_co8352115.1_g000001 Rmu_co8477675.1_g000001 Rmu_sc0000693.1_g000022 Rmu_sc0002077.1_g000001 Rmu_sc0002639.1_g000012 Rmu_sc0008034.1_g000007 Rmu_sc0028141.1_g000001 Rmu_sc0040922.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266630 Rroxscaffold_7G00200930
rosa_rugosa	Rorug02G0109200 Rorug06G0031400
rosa_samantha	Rh2CG163000 Rh6AG153300 Rh6BG153000 Rh6CG149200 Rh6DG137400
rosa_wichuraiana	Rw6G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	977
AclWI	GGATC	4 cut(s)	171, 184, 676, 689
AcuI	CTGAAG	3 cut(s)	231, 462, 572
AcvI	CACGTG	1 cut(s)	116
AfaI	GTAC	3 cut(s)	247, 259, 667
AflIII	ACRYGT	2 cut(s)	113, 242
AgsI	TTSAA	7 cut(s)	191, 331, 458, 559, 707, 740, 1013
AhlI	ACTAGT	2 cut(s)	73, 248
AjiI	CACGTC	2 cut(s)	290, 898
AjnI	CCWGG	1 cut(s)	493
AleI	CACNNNNGTG	1 cut(s)	347
Alw21I	GWGCWC	3 cut(s)	295, 301, 906
Alw26I	GTCTC	1 cut(s)	631
AlwI	GGATC	4 cut(s)	171, 184, 676, 689
ApeKI	GCWGC	6 cut(s)	79, 527, 584, 587, 590, 599
Asp700I	GAANNNNTTC	1 cut(s)	1026
AspLEI	GCGC	1 cut(s)	383
AsuHPI	GGTGA	2 cut(s)	163, 932
BamHI	GGATCC	2 cut(s)	176, 681
BanII	GRGCYC	1 cut(s)	906
BarI	GAAGNNNNNNTAC	2 cut(s)	799, 831
BauI	CACGAG	1 cut(s)	294
BbrPI	CACGTG	1 cut(s)	116
Bbv12I	GWGCWC	3 cut(s)	295, 301, 906
BbvI	GCAGC	6 cut(s)	91, 539, 574, 596, 602, 611
BccI	CCATC	2 cut(s)	589, 709
BciT130I	CCWGG	1 cut(s)	495
BciVI	GTATCC	1 cut(s)	998
BclI	TGATCA	1 cut(s)	697
BcoDI	GTCTC	1 cut(s)	631
BcuI	ACTAGT	2 cut(s)	73, 248
BfaI	CTAG	4 cut(s)	74, 249, 521, 750
BfmI	CTRYAG	1 cut(s)	588
BfoI	RGCGCY	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	977
BfuI	GTATCC	1 cut(s)	998
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	6 cut(s)	80, 528, 585, 588, 591, 600
BlsI	GCNGC	6 cut(s)	81, 529, 586, 589, 592, 601
Bme1390I	CCNGG	1 cut(s)	495
BmgBI	CACGTC	2 cut(s)	290, 898
BmiI	GGNNCC	3 cut(s)	178, 683, 995
BmrFI	CCNGG	1 cut(s)	495
BmsI	GCATC	3 cut(s)	91, 385, 412
BplI	GAGNNNNNCTC	2 cut(s)	613, 645
BpmI	CTGGAG	2 cut(s)	48, 617
Bpu10I	CCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	648
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	4 cut(s)	702, 732, 857, 887
Bse3DI	GCAATG	2 cut(s)	375, 642
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	1 cut(s)	648
BseMI	GCAATG	2 cut(s)	375, 642
BseMII	CTCAG	2 cut(s)	461, 919
BseXI	GCAGC	6 cut(s)	91, 539, 574, 596, 602, 611
BsgI	GTGCAG	1 cut(s)	98
BsiHKAI	GWGCWC	3 cut(s)	295, 301, 906
BsiSI	CCGG	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	631
BsmI	GAATGC	2 cut(s)	432, 977
Bsp1286I	GDGCHC	3 cut(s)	295, 301, 906
Bsp143I	GATC	4 cut(s)	176, 547, 681, 697
Bsp19I	CCATGG	1 cut(s)	648
BspCNI	CTCAG	2 cut(s)	460, 918
BspLI	GGNNCC	3 cut(s)	178, 683, 995
BspMAI	CTGCAG	1 cut(s)	592
BspMI	ACCTGC	1 cut(s)	977
BspPI	GGATC	4 cut(s)	171, 184, 676, 689
BsrDI	GCAATG	2 cut(s)	375, 642
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	4 cut(s)	176, 547, 681, 697
BssSI	CACGAG	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	648
Bst2BI	CACGAG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	760
BstBAI	YACGTR	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	773, 1036
BstDEI	CTNAG	2 cut(s)	447, 905
BstDSI	CCRYGG	1 cut(s)	648
BstEII	GGTNACC	1 cut(s)	943
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	4 cut(s)	179, 550, 684, 700
BstMAI	GTCTC	1 cut(s)	631
BstMBI	GATC	4 cut(s)	176, 547, 681, 697
BstMWI	GCNNNNNNNGC	5 cut(s)	533, 590, 596, 599, 608
BstNI	CCWGG	1 cut(s)	495
BstNSI	RCATGY	2 cut(s)	246, 775
BstPI	GGTNACC	1 cut(s)	943
BstSCI	CCNGG	1 cut(s)	493
BstSFI	CTRYAG	1 cut(s)	588
BstV1I	GCAGC	6 cut(s)	91, 539, 574, 596, 602, 611
BstX2I	RGATCY	3 cut(s)	176, 547, 681
BstYI	RGATCY	3 cut(s)	176, 547, 681
BsuI	GTATCC	1 cut(s)	998
BtgI	CCRYGG	1 cut(s)	648
BtgZI	GCGATG	1 cut(s)	608
BtrI	CACGTC	2 cut(s)	290, 898
BtsIMutI	CAGTG	1 cut(s)	756
BveI	ACCTGC	1 cut(s)	977
Cac8I	GCNNGC	2 cut(s)	773, 1036
CfoI	GCGC	1 cut(s)	383
Csp6I	GTAC	3 cut(s)	246, 258, 666
CspCI	CAANNNNNGTGG	2 cut(s)	1023, 1058
CviAII	CATG	4 cut(s)	243, 649, 772, 847
CviQI	GTAC	3 cut(s)	246, 258, 666
DdeI	CTNAG	2 cut(s)	447, 905
DpnI	GATC	4 cut(s)	178, 549, 683, 699
DpnII	GATC	4 cut(s)	176, 547, 681, 697
Ecl136II	GAGCTC	1 cut(s)	904
Eco130I	CCWWGG	1 cut(s)	648
Eco24I	GRGCYC	1 cut(s)	906
Eco53kI	GAGCTC	1 cut(s)	904
Eco57I	CTGAAG	3 cut(s)	231, 462, 572
Eco72I	CACGTG	1 cut(s)	116
Eco91I	GGTNACC	1 cut(s)	943
EcoICRI	GAGCTC	1 cut(s)	904
EcoO65I	GGTNACC	1 cut(s)	943
EcoRII	CCWGG	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	648
EcoT38I	GRGCYC	1 cut(s)	906
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	4 cut(s)	246, 652, 775, 850
FatI	CATG	4 cut(s)	242, 648, 771, 846
FbaI	TGATCA	1 cut(s)	697
Fnu4HI	GCNGC	6 cut(s)	80, 528, 585, 588, 591, 600
FriOI	GRGCYC	1 cut(s)	906
Fsp4HI	GCNGC	6 cut(s)	80, 528, 585, 588, 591, 600
FspBI	CTAG	4 cut(s)	74, 249, 521, 750
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	6 cut(s)	80, 528, 585, 588, 591, 600
GsuI	CTGGAG	2 cut(s)	48, 617
HaeII	RGCGCY	1 cut(s)	384
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	1 cut(s)	383
Hin1II	CATG	4 cut(s)	246, 652, 775, 850
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	3 cut(s)	322, 628, 639
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	2 cut(s)	163, 932
Hpy166II	GTNNAC	2 cut(s)	763, 876
Hpy188I	TCNGA	9 cut(s)	46, 87, 211, 505, 552, 678, 724, 841, 895
Hpy188III	TCNNGA	3 cut(s)	267, 634, 695
Hpy8I	GTNNAC	2 cut(s)	763, 876
HpyAV	CCTTC	5 cut(s)	304, 571, 695, 701, 959
HpyCH4III	ACNGT	1 cut(s)	760
HpyCH4IV	ACGT	5 cut(s)	115, 260, 289, 733, 897
HpyCH4V	TGCA	5 cut(s)	79, 544, 590, 975, 1034
HpyF10VI	GCNNNNNNNGC	5 cut(s)	533, 590, 596, 599, 608
HpyF3I	CTNAG	2 cut(s)	447, 905
HpySE526I	ACGT	5 cut(s)	115, 260, 289, 733, 897
Hsp92II	CATG	4 cut(s)	246, 652, 775, 850
HspAI	GCGC	1 cut(s)	381
Ksp22I	TGATCA	1 cut(s)	697
Kzo9I	GATC	4 cut(s)	176, 547, 681, 697
LmnI	GCTCC	4 cut(s)	23, 230, 388, 901
Lsp1109I	GCAGC	6 cut(s)	91, 539, 574, 596, 602, 611
LweI	GCATC	3 cut(s)	91, 385, 412
MaeI	CTAG	4 cut(s)	74, 249, 521, 750
MaeII	ACGT	5 cut(s)	115, 260, 289, 733, 897
MaeIII	GTNAC	4 cut(s)	55, 169, 920, 943
MalI	GATC	4 cut(s)	178, 549, 683, 699
MboI	GATC	4 cut(s)	176, 547, 681, 697
MboII	GAAGA	2 cut(s)	224, 404
MfeI	CAATTG	1 cut(s)	915
MflI	RGATCY	3 cut(s)	176, 547, 681
MhlI	GDGCHC	3 cut(s)	295, 301, 906
MluCI	AATT	3 cut(s)	49, 499, 915
MlyI	GAGTC	2 cut(s)	622, 633
MroXI	GAANNNNTTC	1 cut(s)	1026
MseI	TTAA	3 cut(s)	278, 362, 801
MslI	CAYNNNNRTG	2 cut(s)	347, 647
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	495
MunI	CAATTG	1 cut(s)	915
Mva1269I	GAATGC	2 cut(s)	432, 977
MvaI	CCWGG	1 cut(s)	495
MwoI	GCNNNNNNNGC	5 cut(s)	533, 590, 596, 599, 608
NcoI	CCATGG	1 cut(s)	648
NdeII	GATC	4 cut(s)	176, 547, 681, 697
NlaIII	CATG	4 cut(s)	246, 652, 775, 850
NlaIV	GGNNCC	3 cut(s)	178, 683, 995
NmeAIII	GCCGAG	1 cut(s)	379
NmuCI	GTSAC	2 cut(s)	169, 920
NspI	RCATGY	2 cut(s)	246, 775
OliI	CACNNNNGTG	1 cut(s)	347
PaeI	GCATGC	1 cut(s)	775
PciI	ACATGT	1 cut(s)	242
PctI	GAATGC	2 cut(s)	432, 977
PdmI	GAANNNNTTC	1 cut(s)	1026
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	6 cut(s)	81, 529, 586, 589, 592, 601
PleI	GAGTC	2 cut(s)	622, 633
PmaCI	CACGTG	1 cut(s)	116
PmlI	CACGTG	1 cut(s)	116
PpsI	GAGTC	2 cut(s)	622, 633
Ppu21I	YACGTR	1 cut(s)	116
PscI	ACATGT	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	906
Psp6I	CCWGG	1 cut(s)	493
PspCI	CACGTG	1 cut(s)	116
PspEI	GGTNACC	1 cut(s)	943
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	3 cut(s)	178, 683, 995
PstI	CTGCAG	1 cut(s)	592
PsuI	RGATCY	3 cut(s)	176, 547, 681
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	3 cut(s)	247, 259, 667
RsaNI	GTAC	3 cut(s)	246, 258, 666
RseI	CAYNNNNRTG	2 cut(s)	347, 647
SacI	GAGCTC	1 cut(s)	906
SaqAI	TTAA	3 cut(s)	278, 362, 801
SatI	GCNGC	6 cut(s)	80, 528, 585, 588, 591, 600
Sau3AI	GATC	4 cut(s)	176, 547, 681, 697
SchI	GAGTC	2 cut(s)	622, 633
ScrFI	CCNGG	1 cut(s)	495
SduI	GDGCHC	3 cut(s)	295, 301, 906
SfaNI	GCATC	3 cut(s)	91, 385, 412
SfcI	CTRYAG	1 cut(s)	588
SmiMI	CAYNNNNRTG	2 cut(s)	347, 647
SmlI	CTYRAG	2 cut(s)	11, 92
SmoI	CTYRAG	2 cut(s)	11, 92
SpeI	ACTAGT	2 cut(s)	73, 248
SphI	GCATGC	1 cut(s)	775
Sse9I	AATT	3 cut(s)	49, 499, 915
SspMI	CTAG	4 cut(s)	74, 249, 521, 750
SstI	GAGCTC	1 cut(s)	906
StyD4I	CCNGG	1 cut(s)	493
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	1 cut(s)	760
TaiI	ACGT	5 cut(s)	118, 263, 292, 736, 900
TaqI	TCGA	2 cut(s)	606, 654
TasI	AATT	3 cut(s)	49, 499, 915
TatI	WGTACW	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	3 cut(s)	278, 362, 801
Tru9I	TTAA	3 cut(s)	278, 362, 801
TscAI	CASTG	1 cut(s)	763
TseFI	GTSAC	2 cut(s)	169, 920
TseI	GCWGC	6 cut(s)	79, 527, 584, 587, 590, 599
Tsp45I	GTSAC	2 cut(s)	169, 920
TspDTI	ATGAA	2 cut(s)	264, 530
TspRI	CASTG	1 cut(s)	763
XceI	RCATGY	2 cut(s)	246, 775
XmnI	GAANNNNTTC	1 cut(s)	1026
XspI	CTAG	4 cut(s)	74, 249, 521, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.