Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8477675.1

Orthogroup ID

OG0003735

Physical Location & Seq

Genomic Coordinates Reverse (-)

242 .. 1226

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8477675.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgctgaaggtcgaggcagagcgtacttatcatcagagggtccttcagatacttgatcaacttgaaggggagatggtatcagaacgacaacgtattgaagcgcctcctagccccactgttgacaacagcatgcctccacccccaacttatgaggaagttaatggtacatatgcttctcaaacacataatggattgtcagacagcatggattacttcttgggggaggctatgtttacatatcaagctgtatctgacgtggagctcagtttgtcaattggtgactatgttgttgtgcgaaaggtaaccaacaatggttgggcagaaggcgaatgcaaaggcaaagcaggttggttcccattgggatacattgaaagacgggaacgagttcttgcaagcaaggtggctgaagtgttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0072583 GO:0097708 GO:0098657 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

BAR SH3_9

Protein Analysis

138

Amino Acids

15.55

Weight (kDa)

4.74

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39020
fragaria_vesca	FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_3g27182
malus_domestica	MD05G1056500.v1.1 MD10G1064500.v1.1
prunus_persica	Prupe.8G086700_v2.0.a1 Prupe.8G086700_v2.0.a1
pyrus_communis	pycom05g04810 pycom10g05040
rosa_chinensis	RchiOBHm_Chr2g0102681 RchiOBHm_Chr6g0267341
rosa_laevigata	RLG00000014014
rosa_multiflora	Rmu_co8352115.1_g000001 Rmu_co8477675.1_g000001 Rmu_sc0000693.1_g000022 Rmu_sc0002077.1_g000001 Rmu_sc0002639.1_g000012 Rmu_sc0008034.1_g000007 Rmu_sc0028141.1_g000001 Rmu_sc0040922.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266630 Rroxscaffold_7G00200930
rosa_rugosa	Rorug02G0109200 Rorug06G0031400
rosa_samantha	Rh2CG163000 Rh6AG153300 Rh6BG153000 Rh6CG149200 Rh6DG137400
rosa_wichuraiana	Rw6G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	335
AcuI	CTGAAG	2 cut(s)	26, 29
AfaI	GTAC	2 cut(s)	25, 166
AgsI	TTSAA	3 cut(s)	65, 98, 371
AjiI	CACGTC	1 cut(s)	256
AluBI	AGCT	2 cut(s)	245, 262
AluI	AGCT	2 cut(s)	245, 262
Alw21I	GWGCWC	1 cut(s)	264
Asp700I	GAANNNNTTC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	264
BarI	GAAGNNNNNNTAC	2 cut(s)	157, 189
Bbv12I	GWGCWC	1 cut(s)	264
BccI	CCATC	1 cut(s)	67
BciVI	GTATCC	1 cut(s)	356
BclI	TGATCA	1 cut(s)	55
BfaI	CTAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	40
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	2 cut(s)	41, 353
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
BseMII	CTCAG	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	264
BsmI	GAATGC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	41, 353
BspMI	ACCTGC	1 cut(s)	335
BssMI	GATC	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	131, 394
BstDEI	CTNAG	1 cut(s)	263
BstEII	GGTNACC	1 cut(s)	301
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	55
BstNSI	RCATGY	1 cut(s)	133
BstPI	GGTNACC	1 cut(s)	301
BsuI	GTATCC	1 cut(s)	356
BtrI	CACGTC	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	2 cut(s)	131, 394
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	24, 165
CspCI	CAANNNNNGTGG	2 cut(s)	381, 416
CviAII	CATG	2 cut(s)	130, 205
CviJI	RGCY	5 cut(s)	111, 227, 245, 262, 404
CviKI_1	RGCY	5 cut(s)	111, 227, 245, 262, 404
CviQI	GTAC	2 cut(s)	24, 165
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	262
Eco57I	CTGAAG	2 cut(s)	26, 29
Eco91I	GGTNACC	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	40
EcoO65I	GGTNACC	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	264
FaeI	CATG	2 cut(s)	133, 208
FaiI	YATR	9 cut(s)	131, 150, 169, 171, 186, 206, 230, 238, 285
FatI	CATG	2 cut(s)	129, 204
FauNDI	CATATG	1 cut(s)	169
FbaI	TGATCA	1 cut(s)	55
FriOI	GRGCYC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	102
HaeII	RGCGCY	1 cut(s)	104
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	2 cut(s)	133, 208
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	2 cut(s)	121, 234
Hpy188I	TCNGA	5 cut(s)	36, 48, 82, 199, 253
Hpy8I	GTNNAC	2 cut(s)	121, 234
HpyAV	CCTTC	3 cut(s)	53, 59, 317
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	2 cut(s)	91, 255
HpyCH4V	TGCA	2 cut(s)	333, 392
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	2 cut(s)	91, 255
Hsp92II	CATG	2 cut(s)	133, 208
HspAI	GCGC	1 cut(s)	101
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	1 cut(s)	330
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	2 cut(s)	91, 255
MaeIII	GTNAC	2 cut(s)	278, 301
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MfeI	CAATTG	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	1 cut(s)	273
MnlI	CCTC	6 cut(s)	7, 30, 114, 144, 145, 217
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	1 cut(s)	159
MunI	CAATTG	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	335
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	133, 208
NlaIV	GGNNCC	2 cut(s)	41, 353
NmuCI	GTSAC	1 cut(s)	278
NspI	RCATGY	1 cut(s)	133
PaeI	GCATGC	1 cut(s)	133
PctI	GAATGC	1 cut(s)	335
PdmI	GAANNNNTTC	1 cut(s)	384
PpuMI	RGGWCCY	1 cut(s)	40
Psp124BI	GAGCTC	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	40
PspEI	GGTNACC	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	41, 353
PspPI	GGNCC	1 cut(s)	40
PspPPI	RGGWCCY	1 cut(s)	40
RsaI	GTAC	2 cut(s)	25, 166
RsaNI	GTAC	2 cut(s)	24, 165
SacI	GAGCTC	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	8 cut(s)	12, 94, 247, 258, 264, 303, 349, 402
SinI	GGWCC	1 cut(s)	40
SphI	GCATGC	1 cut(s)	133
Sse9I	AATT	1 cut(s)	273
SspMI	CTAG	1 cut(s)	108
SstI	GAGCTC	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	2 cut(s)	94, 258
TaqI	TCGA	1 cut(s)	12
TasI	AATT	1 cut(s)	273
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	278
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	40
XceI	RCATGY	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.