Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003735

Physical Location & Seq

Genomic Coordinates Forward (+)

5314180 .. 5318683

Gene Structure 4504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g05040.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAAGCTATCAGAAAGCAAGCCACCCGGCTTCGCGAACAGGTCGCCAGGCAGCAACAGGCTGTCCTCAAGCAGTTTGGAGCTGGAGGATACGGAGGTTCAGATAATTTAGTAACTGATGAGGCAGAACTCGTGCAGCATCAGAAACTTGAAAAGCTTTACATATCAACACGTGCCGGCAAGCATTATCAAAGGGATATTGTTCGTGGTGTGGAGGGATATATTGTCACCGGGTCCAAACAAGTTGAAATAGGAACGAAGTTGTCAGAAGATAGTAGGAAATATGGTGCTGAAAATACGTGTACTAGTGGAAGTACATTATCAAGAGCTTCCTTAAGCTATGGGCGAGCTCGTGCTCAAATGGAGAAGGAGAGGGGGAATCTGTTGAAAGCTCTTGGTACACAGGTGGCAGAGCCATTAAGAGCAATGGTAATGGGGGCTCCATTGGAGGATGCTCGGCATCTTGCTCAACGTTATGATAGAATGCGACAAGAAGCTGAAGCTCAGGCTATTGAAGTTTCCAAACGCCAAGCAAAAGTGCGGGAAACACCAGGAAATTCAGAAAATGTTATGAAACTGGAAGCTGCAGAGTCGAAGCTGCAAGATCTGAAGTCAAATATGGCAATATTAGGGAAGGAAGCTGCTGCAGCAATGGCAGCTGTTGAGGCTCAACAACAGAGGTTGACACTCCAGCGACTTATTGCCATGGTTGAGGCAGAGCGTACTTATCATCAGAGGATCCTTCAGATACTTGATCAACTTGAAGGAGAGATGGTATCAGAACGACAACGGATTGAAGCACCTCCTAGCCCTACTGTTGAAACCACCATGCCTCCACCTCCATCTTATGAAGAAGTTAACGGCATATATGCTTCTCAAACACATAATGGATCGTCGAACAGCATGGATTACTTCTTAGGGGAGGTTATGTTTACATATCAAGCTGTGTCTGACATAGAGCTCAGTTTGTCAGTTGGCGATTATGTTGTTGTGCGAAAGGTGACAAACAACGGTTGGGCGGAAGGCGAATGCAAAGGCAAAGCAGGTTGGTTCCCGTTTGGATACATCGAAAGAAGGGAACGAGTTCTCGCAAGCAAGGTGACCGAAGTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0072583 GO:0097708 GO:0098657 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

BAR SH3_9

Protein Analysis

372

Amino Acids

41.31

Weight (kDa)

7.0

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39020
fragaria_vesca	FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_3g27182
malus_domestica	MD05G1056500.v1.1 MD10G1064500.v1.1
prunus_persica	Prupe.8G086700_v2.0.a1 Prupe.8G086700_v2.0.a1
pyrus_communis	pycom05g04810 pycom10g05040
rosa_chinensis	RchiOBHm_Chr2g0102681 RchiOBHm_Chr6g0267341
rosa_laevigata	RLG00000014014
rosa_multiflora	Rmu_co8352115.1_g000001 Rmu_co8477675.1_g000001 Rmu_sc0000693.1_g000022 Rmu_sc0002077.1_g000001 Rmu_sc0002639.1_g000012 Rmu_sc0008034.1_g000007 Rmu_sc0028141.1_g000001 Rmu_sc0040922.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266630 Rroxscaffold_7G00200930
rosa_rugosa	Rorug02G0109200 Rorug06G0031400
rosa_samantha	Rh2CG163000 Rh6AG153300 Rh6BG153000 Rh6CG149200 Rh6DG137400
rosa_wichuraiana	Rw6G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1034
AccII	CGCG	1 cut(s)	36
AciI	CCGC	2 cut(s)	541, 1019
AclI	AACGTT	1 cut(s)	472
AclWI	GGATC	3 cut(s)	733, 746, 898
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	3 cut(s)	519, 629, 728
AcvI	CACGTG	1 cut(s)	173
AfaI	GTAC	4 cut(s)	304, 316, 400, 724
AflII	CTTAAG	1 cut(s)	334
AflIII	ACRYGT	2 cut(s)	170, 299
AgsI	TTSAA	7 cut(s)	152, 248, 388, 515, 764, 797, 821
AhlI	ACTAGT	1 cut(s)	305
AjnI	CCWGG	2 cut(s)	47, 550
Alw21I	GWGCWC	3 cut(s)	352, 358, 963
AlwI	GGATC	3 cut(s)	733, 746, 898
ApeKI	GCWGC	8 cut(s)	52, 136, 584, 598, 641, 644, 647, 656
ApoI	RAATTY	1 cut(s)	556
Asp700I	GAANNNNTTC	1 cut(s)	1083
AspS9I	GGNCC	1 cut(s)	234
AsuC2I	CCSGG	2 cut(s)	28, 232
AsuHPI	GGTGA	3 cut(s)	220, 1012, 1111
AvaII	GGWCC	1 cut(s)	234
BaeI	ACNNNNGTAYC	4 cut(s)	82, 115, 390, 423
BamHI	GGATCC	1 cut(s)	738
BanII	GRGCYC	3 cut(s)	352, 442, 963
BauI	CACGAG	2 cut(s)	131, 351
BbrPI	CACGTG	1 cut(s)	173
Bbv12I	GWGCWC	3 cut(s)	352, 358, 963
BbvI	GCAGC	8 cut(s)	64, 148, 571, 585, 628, 631, 659, 668
BccI	CCATC	2 cut(s)	766, 850
BceAI	ACGGC	1 cut(s)	877
BciT130I	CCWGG	2 cut(s)	49, 552
BciVI	GTATCC	2 cut(s)	83, 1055
BclI	TGATCA	1 cut(s)	754
BcnI	CCSGG	2 cut(s)	28, 232
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	3 cut(s)	306, 807, 1114
BfmI	CTRYAG	2 cut(s)	585, 645
BfrI	CTTAAG	1 cut(s)	334
BfuAI	ACCTGC	1 cut(s)	1034
BfuI	GTATCC	2 cut(s)	83, 1055
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	8 cut(s)	53, 137, 585, 599, 642, 645, 648, 657
BlsI	GCNGC	8 cut(s)	54, 138, 586, 600, 643, 646, 649, 658
Bme1390I	CCNGG	4 cut(s)	28, 49, 232, 552
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	4 cut(s)	235, 441, 740, 1052
BmrFI	CCNGG	4 cut(s)	28, 49, 232, 552
BmsI	GCATC	3 cut(s)	148, 442, 469
BpmI	CTGGAG	2 cut(s)	105, 674
Bpu10I	CCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	2 cut(s)	28, 232
BsaAI	YACGTR	2 cut(s)	173, 300
BsaJI	CCNNGG	1 cut(s)	705
BsaXI	ACNNNNNCTCC	6 cut(s)	759, 789, 817, 847, 914, 944
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	582
Bse3DI	GCAATG	2 cut(s)	432, 657
BseBI	CCWGG	2 cut(s)	49, 552
BseDI	CCNNGG	1 cut(s)	705
BseGI	GGATG	1 cut(s)	457
BseMI	GCAATG	2 cut(s)	432, 657
BseMII	CTCAG	2 cut(s)	518, 976
BseNI	ACTGG	1 cut(s)	582
BseXI	GCAGC	8 cut(s)	64, 148, 571, 585, 628, 631, 659, 668
BsgI	GTGCAG	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	36
BsiHKAI	GWGCWC	3 cut(s)	352, 358, 963
BsiSI	CCGG	3 cut(s)	28, 177, 231
BsmI	GAATGC	2 cut(s)	489, 1034
Bsp1286I	GDGCHC	4 cut(s)	352, 358, 442, 963
Bsp143I	GATC	4 cut(s)	604, 738, 754, 890
Bsp19I	CCATGG	1 cut(s)	705
Bsp68I	TCGCGA	1 cut(s)	36
BspACI	CCGC	2 cut(s)	541, 1019
BspCNI	CTCAG	2 cut(s)	517, 975
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	4 cut(s)	235, 441, 740, 1052
BspMAI	CTGCAG	2 cut(s)	589, 649
BspMI	ACCTGC	1 cut(s)	1034
BspPI	GGATC	3 cut(s)	733, 746, 898
BspTI	CTTAAG	1 cut(s)	334
BsrDI	GCAATG	2 cut(s)	432, 657
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	582
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	705
BssMI	GATC	4 cut(s)	604, 738, 754, 890
BssSI	CACGAG	2 cut(s)	131, 351
BssT1I	CCWWGG	1 cut(s)	705
Bst2BI	CACGAG	2 cut(s)	131, 351
Bst2UI	CCWGG	2 cut(s)	49, 552
Bst4CI	ACNGT	2 cut(s)	817, 1013
BstAFI	CTTAAG	1 cut(s)	334
BstBAI	YACGTR	2 cut(s)	173, 300
BstC8I	GCNNGC	5 cut(s)	21, 178, 182, 348, 1093
BstDEI	CTNAG	3 cut(s)	504, 916, 962
BstDSI	CCRYGG	1 cut(s)	705
BstEII	GGTNACC	1 cut(s)	1099
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	4 cut(s)	607, 741, 757, 893
BstMBI	GATC	4 cut(s)	604, 738, 754, 890
BstMWI	GCNNNNNNNGC	4 cut(s)	647, 653, 656, 665
BstNI	CCWGG	2 cut(s)	49, 552
BstPI	GGTNACC	1 cut(s)	1099
BstSCI	CCNGG	4 cut(s)	26, 47, 230, 550
BstSFI	CTRYAG	2 cut(s)	585, 645
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	8 cut(s)	64, 148, 571, 585, 628, 631, 659, 668
BstX2I	RGATCY	2 cut(s)	604, 738
BstYI	RGATCY	2 cut(s)	604, 738
BsuI	GTATCC	2 cut(s)	83, 1055
BtgI	CCRYGG	1 cut(s)	705
BtsCI	GGATG	1 cut(s)	457
BtuMI	TCGCGA	1 cut(s)	36
BveI	ACCTGC	1 cut(s)	1034
Cac8I	GCNNGC	5 cut(s)	21, 178, 182, 348, 1093
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	234
Csp6I	GTAC	4 cut(s)	303, 315, 399, 723
CviAII	CATG	3 cut(s)	706, 829, 904
CviQI	GTAC	4 cut(s)	303, 315, 399, 723
DdeI	CTNAG	3 cut(s)	504, 916, 962
DpnI	GATC	4 cut(s)	606, 740, 756, 892
DpnII	GATC	4 cut(s)	604, 738, 754, 890
EciI	GGCGGA	1 cut(s)	1034
Ecl136II	GAGCTC	2 cut(s)	350, 961
Eco130I	CCWWGG	1 cut(s)	705
Eco24I	GRGCYC	3 cut(s)	352, 442, 963
Eco47I	GGWCC	1 cut(s)	234
Eco53kI	GAGCTC	2 cut(s)	350, 961
Eco57I	CTGAAG	3 cut(s)	519, 629, 728
Eco72I	CACGTG	1 cut(s)	173
Eco91I	GGTNACC	1 cut(s)	1099
EcoICRI	GAGCTC	2 cut(s)	350, 961
EcoO65I	GGTNACC	1 cut(s)	1099
EcoRII	CCWGG	2 cut(s)	47, 550
EcoT14I	CCWWGG	1 cut(s)	705
EcoT38I	GRGCYC	3 cut(s)	352, 442, 963
ErhI	CCWWGG	1 cut(s)	705
FaeI	CATG	3 cut(s)	709, 832, 907
FatI	CATG	3 cut(s)	705, 828, 903
FauI	CCCGC	1 cut(s)	534
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	8 cut(s)	53, 137, 585, 599, 642, 645, 648, 657
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	3 cut(s)	352, 442, 963
Fsp4HI	GCNGC	8 cut(s)	53, 137, 585, 599, 642, 645, 648, 657
FspBI	CTAG	3 cut(s)	306, 807, 1114
GluI	GCNGC	8 cut(s)	53, 137, 585, 599, 642, 645, 648, 657
GsuI	CTGGAG	2 cut(s)	105, 674
HapII	CCGG	3 cut(s)	28, 177, 231
Hin1II	CATG	3 cut(s)	709, 832, 907
HincII	GTYRAC	2 cut(s)	684, 859
HindII	GTYRAC	2 cut(s)	684, 859
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	2 cut(s)	379, 590
HpaI	GTTAAC	1 cut(s)	859
HpaII	CCGG	3 cut(s)	28, 177, 231
HphI	GGTGA	3 cut(s)	220, 1012, 1111
Hpy166II	GTNNAC	5 cut(s)	303, 401, 684, 859, 933
Hpy188III	TCNNGA	2 cut(s)	35, 324
Hpy8I	GTNNAC	5 cut(s)	303, 401, 684, 859, 933
Hpy99I	CGWCG	1 cut(s)	898
HpyAV	CCTTC	6 cut(s)	361, 628, 752, 758, 1016, 1068
HpyCH4III	ACNGT	2 cut(s)	817, 1013
HpyCH4IV	ACGT	3 cut(s)	172, 299, 472
HpyCH4V	TGCA	5 cut(s)	136, 587, 601, 647, 1032
HpyF10VI	GCNNNNNNNGC	4 cut(s)	647, 653, 656, 665
HpyF3I	CTNAG	3 cut(s)	504, 916, 962
HpySE526I	ACGT	3 cut(s)	172, 299, 472
Hsp92II	CATG	3 cut(s)	709, 832, 907
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
Ksp22I	TGATCA	1 cut(s)	754
KspAI	GTTAAC	1 cut(s)	859
Kzo9I	GATC	4 cut(s)	604, 738, 754, 890
LmnI	GCTCC	2 cut(s)	80, 445
Lsp1109I	GCAGC	8 cut(s)	64, 148, 571, 585, 628, 631, 659, 668
LweI	GCATC	3 cut(s)	148, 442, 469
MaeI	CTAG	3 cut(s)	306, 807, 1114
MaeII	ACGT	3 cut(s)	172, 299, 472
MaeIII	GTNAC	4 cut(s)	112, 226, 1000, 1099
MalI	GATC	4 cut(s)	606, 740, 756, 892
MboI	GATC	4 cut(s)	604, 738, 754, 890
MboII	GAAGA	2 cut(s)	281, 863
MflI	RGATCY	2 cut(s)	604, 738
MhlI	GDGCHC	4 cut(s)	352, 358, 442, 963
MluCI	AATT	2 cut(s)	106, 556
MlyI	GAGTC	1 cut(s)	599
MroNI	GCCGGC	1 cut(s)	176
MroXI	GAANNNNTTC	1 cut(s)	1083
MseI	TTAA	3 cut(s)	335, 419, 858
MspA1I	CMGCKG	1 cut(s)	659
MspCI	CTTAAG	1 cut(s)	334
MspI	CCGG	3 cut(s)	28, 177, 231
MspR9I	CCNGG	4 cut(s)	28, 49, 232, 552
Mva1269I	GAATGC	2 cut(s)	489, 1034
MvaI	CCWGG	2 cut(s)	49, 552
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	4 cut(s)	647, 653, 656, 665
NaeI	GCCGGC	1 cut(s)	178
NciI	CCSGG	2 cut(s)	28, 232
NcoI	CCATGG	1 cut(s)	705
NdeII	GATC	4 cut(s)	604, 738, 754, 890
NgoMIV	GCCGGC	1 cut(s)	176
NlaIII	CATG	3 cut(s)	709, 832, 907
NlaIV	GGNNCC	4 cut(s)	235, 441, 740, 1052
NmeAIII	GCCGAG	1 cut(s)	436
NmuCI	GTSAC	3 cut(s)	226, 1000, 1099
NruI	TCGCGA	1 cut(s)	36
PctI	GAATGC	2 cut(s)	489, 1034
PdiI	GCCGGC	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	1083
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	8 cut(s)	54, 138, 586, 600, 643, 646, 649, 658
PleI	GAGTC	1 cut(s)	598
PmaCI	CACGTG	1 cut(s)	173
PmlI	CACGTG	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	598
Ppu21I	YACGTR	2 cut(s)	173, 300
Psp124BI	GAGCTC	2 cut(s)	352, 963
Psp1406I	AACGTT	1 cut(s)	472
Psp6I	CCWGG	2 cut(s)	47, 550
PspCI	CACGTG	1 cut(s)	173
PspEI	GGTNACC	1 cut(s)	1099
PspGI	CCWGG	2 cut(s)	47, 550
PspN4I	GGNNCC	4 cut(s)	235, 441, 740, 1052
PspPI	GGNCC	1 cut(s)	234
PstI	CTGCAG	2 cut(s)	589, 649
PsuI	RGATCY	2 cut(s)	604, 738
PvuII	CAGCTG	1 cut(s)	659
RruI	TCGCGA	1 cut(s)	36
RsaI	GTAC	4 cut(s)	304, 316, 400, 724
RsaNI	GTAC	4 cut(s)	303, 315, 399, 723
SacI	GAGCTC	2 cut(s)	352, 963
SaqAI	TTAA	3 cut(s)	335, 419, 858
SatI	GCNGC	8 cut(s)	53, 137, 585, 599, 642, 645, 648, 657
Sau3AI	GATC	4 cut(s)	604, 738, 754, 890
Sau96I	GGNCC	1 cut(s)	234
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	4 cut(s)	28, 49, 232, 552
SduI	GDGCHC	4 cut(s)	352, 358, 442, 963
SfaNI	GCATC	3 cut(s)	148, 442, 469
SfcI	CTRYAG	2 cut(s)	585, 645
SinI	GGWCC	1 cut(s)	234
SmlI	CTYRAG	2 cut(s)	68, 334
SmoI	CTYRAG	2 cut(s)	68, 334
SpeI	ACTAGT	1 cut(s)	305
Sse9I	AATT	2 cut(s)	106, 556
SsiI	CCGC	2 cut(s)	541, 1019
SspI	AATATT	1 cut(s)	627
SspMI	CTAG	3 cut(s)	306, 807, 1114
SstI	GAGCTC	2 cut(s)	352, 963
StyD4I	CCNGG	4 cut(s)	26, 47, 230, 550
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	2 cut(s)	817, 1013
TaiI	ACGT	3 cut(s)	175, 302, 475
TaqI	TCGA	3 cut(s)	593, 896, 1068
TasI	AATT	2 cut(s)	106, 556
TatI	WGTACW	2 cut(s)	302, 314
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	3 cut(s)	335, 419, 858
Tru9I	TTAA	3 cut(s)	335, 419, 858
TseFI	GTSAC	3 cut(s)	226, 1000, 1099
TseI	GCWGC	8 cut(s)	52, 136, 584, 598, 641, 644, 647, 656
Tsp45I	GTSAC	3 cut(s)	226, 1000, 1099
TspDTI	ATGAA	2 cut(s)	587, 864
TspGWI	ACGGA	2 cut(s)	108, 805
Vha464I	CTTAAG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	234
XapI	RAATTY	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	1083
XspI	CTAG	3 cut(s)	306, 807, 1114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.